mRNA_L-elsbetiae_contig1226.1871.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1226.1871.1
Unique NamemRNA_L-elsbetiae_contig1226.1871.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: A0A6H5KDQ8_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.870e-8
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   85 EKRQSCDYCSMKKTKCSGGDPCLRCVRDQVGCIYSSKKRTGRRLSLNTAVTAAA 246
            E R SCD C +KK +C GG PCLRC R    C YS+K++ GR  +L + + A A
Sbjct:   39 ELRSSCDRCWVKKRRCPGGQPCLRCRRGSHSCSYSAKRKLGRPPALASPINAGA 92
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BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: D8LS52_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS52_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 3.180e-8
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   82 GEKRQSCDYCSMKKTKCSGGDPCLRCVRDQVGCIYSSKKRTGRRLSLNTAVTAAA 246
            GE R SCD C +KK +C GG PCLRC R    C YS+K++ GR  +L + + A A
Sbjct:   38 GELRSSCDRCWVKKRRCPGGQPCLRCRRGSHSCSYSAKRKLGRPPALASPINAGA 92
[Close]
BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: M2SWN0_COCSN (Zn(2)-C6 fungal-type domain-containing protein n=4 Tax=Bipolaris TaxID=33194 RepID=M2SWN0_COCSN)

HSP 1 Score: 56.6 bits (135), Expect = 1.120e-6
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   97 SCDYCSMKKTKCSGGDP-CLRCVRDQVGCIYSSKKRTGR 210
            +CD C ++K KCSG  P CLRC R+Q+GC+YS +K+ GR
Sbjct:   17 ACDECRIRKLKCSGNTPKCLRCTREQIGCVYSPQKQMGR 55
[Close]
BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: A0A7S2WSH6_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2WSH6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.210e-6
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   91 RQSCDYCSMKKTKCSGGDPCLRCVRDQVGCIYSSKKRTG 207
            + SCD C+  K KCSGGDPC RCV+  + C YS +K+ G
Sbjct:    9 KSSCDACTESKVKCSGGDPCARCVKKGIQCFYSPRKKRG 47
[Close]
BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: A0A0D2AWF9_9EURO (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Exophiala spinifera TaxID=91928 RepID=A0A0D2AWF9_9EURO)

HSP 1 Score: 55.8 bits (133), Expect = 2.370e-6
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   97 SCDYCSMKKTKCSGGDPCLRCVRDQVGCIYSSKKRTGRRLSL 222
            +CD C + +TKCSGGD C +CV+D  GC+Y  +KR   +  L
Sbjct:   46 ACDRCRVMRTKCSGGDRCTKCVKDNAGCVYGDRKRERNKKDL 87
[Close]
BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: A0A1Y2AA60_9FUNG (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2AA60_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 2.410e-6
Identity = 18/44 (40.91%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   94 QSCDYCSMKKTKCSGGDPCLRCVRDQVGCIYSSKKRTGRRLSLN 225
            Q+C+YC +K+ KCSG  PC +C+ + + C YS  K+ GR++ ++
Sbjct:   14 QACNYCKLKRVKCSGDCPCKKCISNNIECTYSDSKKRGRKVKID 57
[Close]
BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: A0A1Y1XJT1_9FUNG (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XJT1_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 2.460e-6
Identity = 17/44 (38.64%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   94 QSCDYCSMKKTKCSGGDPCLRCVRDQVGCIYSSKKRTGRRLSLN 225
            Q+C+YC +K+ KC+G  PC +C+ + + C+YS  K+ GR++  +
Sbjct:   13 QACNYCKLKRVKCTGDCPCQKCITNHIKCVYSESKKRGRKIKFD 56
[Close]
BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: A0A2R5G846_9STRA (Xylanolytic transcriptional activator xlnR n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G846_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.310e-6
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:   91 RQSCDYCSMKKTKCSGGDPCLRCVRDQVGCIYSSKKRTG 207
            + SCD C+  K KCSG DPC RCVR  + C YS KK+ G
Sbjct:   12 KSSCDACTGSKVKCSGEDPCSRCVRKGIQCFYSPKKKRG 50
[Close]
BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: W6ZRT9_COCMI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Bipolaris oryzae ATCC 44560 TaxID=930090 RepID=W6ZRT9_COCMI)

HSP 1 Score: 54.7 bits (130), Expect = 5.270e-6
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   97 SCDYCSMKKTKCSGGDP-CLRCVRDQVGCIYSSKKRTGR 210
            +CD C  +K KCSG  P CLRC R+Q+GC+YS +K+ GR
Sbjct:   17 ACDECRTRKLKCSGDTPKCLRCKREQIGCVYSPQKQMGR 55
[Close]
BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Match: N4XTJ5_COCH4 (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Cochliobolus heterostrophus TaxID=5016 RepID=N4XTJ5_COCH4)

HSP 1 Score: 54.3 bits (129), Expect = 7.180e-6
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   97 SCDYCSMKKTKCSGGDP-CLRCVRDQVGCIYSSKKRTGR 210
            +CD C  +K +CSG  P CLRC R+Q+GC+YS +K+ GR
Sbjct:   17 ACDECRTRKLRCSGDTPKCLRCTREQIGCVYSPQKQMGR 55
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1226.1871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KDQ8_9PHAE1.870e-848.15Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LS52_ECTSI3.180e-849.09Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
M2SWN0_COCSN1.120e-656.41Zn(2)-C6 fungal-type domain-containing protein n=4... [more]
A0A7S2WSH6_9STRA1.210e-653.85Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A0D2AWF9_9EURO2.370e-647.62Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A1Y2AA60_9FUNG2.410e-640.91Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A1Y1XJT1_9FUNG2.460e-638.64Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A2R5G846_9STRA4.310e-656.41Xylanolytic transcriptional activator xlnR n=1 Tax... [more]
W6ZRT9_COCMI5.270e-656.41Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
N4XTJ5_COCH47.180e-653.85Zn(2)-C6 fungal-type domain-containing protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1226contigL-elsbetiae_contig1226:21710..22605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-17_003460.1
Exons2
Model size415
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.4046504-CDS-L-elsbetiae_contig1226:21709..219681622815424.4046504-CDS-L-elsbetiae_contig1226:21709..21968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1226 21710..21968 -
1691682891.283562-CDS-L-elsbetiae_contig1226:21709..219681691682891.283562-CDS-L-elsbetiae_contig1226:21709..21968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1226 21710..21968 -
1622815424.4183125-CDS-L-elsbetiae_contig1226:22450..226051622815424.4183125-CDS-L-elsbetiae_contig1226:22450..22605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1226 22451..22605 -
1691682891.2918732-CDS-L-elsbetiae_contig1226:22450..226051691682891.2918732-CDS-L-elsbetiae_contig1226:22450..22605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1226 22451..22605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1226.1871.1prot_L-elsbetiae_contig1226.1871.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1226 21710..22605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1226.1871.1

>prot_L-elsbetiae_contig1226.1871.1 ID=prot_L-elsbetiae_contig1226.1871.1|Name=mRNA_L-elsbetiae_contig1226.1871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
GTCQGGVGVGDRGGEDGRGSDVGSDGGGEKRQSCDYCSMKKTKCSGGDPC
LRCVRDQVGCIYSSKKRTGRRLSLNTAVTAAAAFSSGDVASEGGGGGGGG
EMIASPSPAGPRVWGNPTAVAGYGAGGGGTVGAFIPQP
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mRNA from alignment at L-elsbetiae_contig1226:21710..22605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1226.1871.1 ID=mRNA_L-elsbetiae_contig1226.1871.1|Name=mRNA_L-elsbetiae_contig1226.1871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=896bp|location=Sequence derived from alignment at L-elsbetiae_contig1226:21710..22605- (Laminarionema elsbetiae ELsaHSoW15)
GGTACCTGCCAGGGCGGCGTGGGCGTGGGCGATCGGGGCGGCGAGGACGG
CAGAGGGTCAGATGTTGGTTCGGACGGGGGGGGAGAGAAGCGACAGTCGT
GCGACTACTGCTCCATGAAGAAGACCAAGTGCTCGGGAGGCGACCCCTGC
CTCAGGTGGGAGGGTGGATGGGTAGAGTTGGTTCCCTACGTAGGTGTGTG
TGTGTGTGTGCGCGCGCGGCGGGGCCCCCTTCCTCCTTGCTTAGACAATA
TTTGTCTTTTGATGTGGAGTGGTTCGTTATGCCAGGGAGTGGACAGACGG
GTCTCAGCTCTTGCAAGGCTGCCTGAGATTGAGAACTGCGATTTAGCTGG
TTGCTGGATGGGGAAATCATATTTAGCCGTAAATTCATCGTGCAGTTGCA
CCTGGTGCACCTACATCTATACGGACTGGTGTTCATTTCCTGGTGTACGG
GTCCGATAAGCTGGTACAACAAACACGCCGGGGCGCGACTTTTCGGAAGC
AGAGGAAAAGTGTACCCTGAACCAAAGCTCAACCGCGCAGGCGCAAGCAA
AGAACAGCGCAAACGACACCCTGCTGGACAAACCACACCCGGCACTCCGC
GTCTCGCCCGTCTTGCTGTGTTCTTTCCATCCCTCAGGTGTGTCAGGGAC
CAAGTGGGGTGCATCTACAGCTCCAAGAAGAGAACCGGCCGGCGTCTCTC
CCTCAACACTGCCGTAACCGCCGCCGCCGCTTTCTCGTCCGGTGATGTCG
CAAGCGAAGGCGGCGGCGGCGGCGGCGGTGGTGAAATGATTGCCTCCCCT
TCCCCGGCGGGGCCCCGTGTTTGGGGAAACCCCACTGCTGTGGCAGGCTA
TGGCGCGGGCGGCGGGGGAACCGTTGGCGCGTTTATTCCTCAACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1226:21710..22605-

>mRNA_L-elsbetiae_contig1226.1871.1 ID=mRNA_L-elsbetiae_contig1226.1871.1|Name=mRNA_L-elsbetiae_contig1226.1871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig1226:21710..22605- (Laminarionema elsbetiae ELsaHSoW15)
GGTACCTGCCAGGGCGGCGTGGGCGTGGGCGATCGGGGCGGCGAGGACGG
CAGAGGGTCAGATGTTGGTTCGGACGGGGGGGGAGAGAAGCGACAGTCGT
GCGACTACTGCTCCATGAAGAAGACCAAGTGCTCGGGAGGCGACCCCTGC
CTCAGGGTACCTGCCAGGGCGGCGTGGGCGTGGGCGATCGGGGCGGCGAG
GACGGCAGAGGGTCAGATGTTGGTTCGGACGGGGGGGGAGAGAAGCGACA
GTCGTGCGACTACTGCTCCATGAAGAAGACCAAGTGCTCGGGAGGCGACC
CCTGCCTCAGGTGTGTCAGGGACCAAGTGGGGTGCATCTACAGCTCCAAG
AAGAGAACCGGCCGGCGTCTCTCCCTCAACACTGCCGTAACCGCCGCCGC
CGCTTTCTCGTCCGGTGATGTCGCAAGCGAAGGCGGCGGCGGCGGCGGCG
GTGGTGAAATGATTGCCTCCCCTTCCCCGGCGGGGCCCCGTGTTTGGGGA
AACCCCACTGCTGTGGCAGGCTATGGCGCGGGCGGCGGGGGAACCGTTGG
CGCGTTTATTCCTCAACCGGTGTGTCAGGGACCAAGTGGGGTGCATCTAC
AGCTCCAAGAAGAGAACCGGCCGGCGTCTCTCCCTCAACACTGCCGTAAC
CGCCGCCGCCGCTTTCTCGTCCGGTGATGTCGCAAGCGAAGGCGGCGGCG
GCGGCGGCGGTGGTGAAATGATTGCCTCCCCTTCCCCGGCGGGGCCCCGT
GTTTGGGGAAACCCCACTGCTGTGGCAGGCTATGGCGCGGGCGGCGGGGG
AACCGTTGGCGCGTTTATTCCTCAACCG
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