mRNA_L-elsbetiae_contig12253.1869.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12253.1869.1
Unique NamemRNA_L-elsbetiae_contig12253.1869.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12253.1869.1 vs. uniprot
Match: D8LQQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.040e-12
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:   38 WVSALGEASRRARAPALAAEVEEERWRRKDEAAADAQRRRNAQRRDQNAATRAGIAAKYGLDPGRSA 238
            WVSALGEA RR RAP L  EVEEERWRR++EA A   R RNA++R +N   RA +A KYGLDP + A
Sbjct:  226 WVSALGEAVRRLRAPRLEDEVEEERWRRREEADAAXXRLRNARKRQENEGLRARMAEKYGLDPEKYA 292
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BLAST of mRNA_L-elsbetiae_contig12253.1869.1 vs. uniprot
Match: A0A6H5KIX8_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.050e-10
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:   38 WVSALGEASRRARAPALAAEVEEERWRRKDEAAADAQRRRNAQRRDQNAATRAGIAAKYGLD 223
            WVSALGEA RR RAP L  EVEEER RR++EA   A+R RNA++R +N   RA +A KYGLD
Sbjct:  254 WVSALGEAVRRLRAPCLEHEVEEERLRRREEADTAARRLRNARKRQENEGFRARMAEKYGLD 315
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12253.1869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQQ8_ECTSI1.040e-1262.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIX8_9PHAE3.050e-1062.90FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12253contigL-elsbetiae_contig12253:1355..3133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.2228398-CDS-L-elsbetiae_contig12253:1354..15851622815424.2228398-CDS-L-elsbetiae_contig12253:1354..1585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12253 1355..1585 +
1691682891.220069-CDS-L-elsbetiae_contig12253:1354..15851691682891.220069-CDS-L-elsbetiae_contig12253:1354..1585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12253 1355..1585 +
1622815424.24025-CDS-L-elsbetiae_contig12253:3098..31311622815424.24025-CDS-L-elsbetiae_contig12253:3098..3131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12253 3099..3131 +
1691682891.2302122-CDS-L-elsbetiae_contig12253:3098..31311691682891.2302122-CDS-L-elsbetiae_contig12253:3098..3131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12253 3099..3131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12253.1869.1prot_L-elsbetiae_contig12253.1869.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12253 1355..3131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12253.1869.1

>prot_L-elsbetiae_contig12253.1869.1 ID=prot_L-elsbetiae_contig12253.1869.1|Name=mRNA_L-elsbetiae_contig12253.1869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
EARGPPPPPAGPLGFRAGGGVPPRTRPRPRRGGGGGALAAEGRGRRGCPA
PTKRPETRPERRHEGRHRRQVRPRPGEVCQRLAFLLFE
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mRNA from alignment at L-elsbetiae_contig12253:1355..3133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12253.1869.1 ID=mRNA_L-elsbetiae_contig12253.1869.1|Name=mRNA_L-elsbetiae_contig12253.1869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1779bp|location=Sequence derived from alignment at L-elsbetiae_contig12253:1355..3133+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGCCAGAGGCCCCCCCCCCCCCCCGGCGGGGCCCCTGGGTTTCCGCGC
TGGGGGAGGCGTCCCGCCGCGCACGCGCCCCCGCCCTCGCCGCGGAGGTG
GAGGAGGAGCGCTGGCGGCGGAAGGACGAGGCCGCCGCGGATGCCCAGCG
CCGACGAAACGCCCAGAGACGAGACCAGAACGCCGCCACGAGGGCCGGCA
TCGCCGCCAAGTACGGCCTCGACCCGGGGAGGTACGCGTCTCGCGGGGGG
GGCGGGGGTAGGAGTGGGGTTGACGCAAGCGGGGGTAGGAGGGCGGTGGA
ACGATCTGGAGGGGATGGGGCGGGAGGCGCCGGAGGGCGTATGGTGGACA
GTCGTCAGCGCGGGCCACGTTAGTGGAGCGGGGTTTCGCGGGGCTGTGGT
GTGGAGGTTTTGGCAAGGGCAGCGTTTTGGTGGACAAGATGCTCAGGTTT
TAAGGGTTATTTTTTTTGTCGTGGTCGTTGTGGTGCTCCATATGATGTTG
GTTGTTTTCGTGTTTGACGATGTGGAATTTCGAGACGCTGCCGCTGGATT
GGGCTTTATTTCCACGGTGCCGTGAGAGGCAGCAGCTCAGCTAGCTGCGC
CCCGAGACCCCTATGGTACTTGTTTTTCTGGTTTGCTGCAGACGATGGGC
GGCATGGACAGGCAGGCGACCGCCTCTGAAGATCAGGTTACTTCCGGTGT
GTGTGTTGTCCAGCCCCACCGGTTAGATATTTCGATATTTCTCGGTCACC
AGTGACCTCGTTTCGAGAGTAGGTAGTGACCTCGTTTCGAGACCCCACTA
CAAAAGCACACACAGCAGGAGCTAGAAACAAACGCGGCGCACAGCAGCGT
TCGAATTTGATCGTGTTCCTCACCACAATACATACATCAGTCTTATTCTT
GAAACCAGTTTCTTTGATTTCACGTGGTCGCGCGTCGGCGTGTAGGTAAA
AGGGGGACGCTTCGAGGTACTACACTTTGCAGTGCATTTGTCTGTACAAC
TAGAACCAGCCGGGGTCACAGGAGGAGGTGAACACTGGGGCTTTTTCTTC
TTTTTTATTTTCTTTTTTTGCCCCACCTTCCTCCTGCGGCTCTTGCCTTG
GGTTTTATCGCGAGAAGGGTTCAGCTGTCCCTTTCCCTCGTCAACGTGAT
TACGTTGAAGTTTGGTACTCACGAGCTTTTCAGCTTTAATCGCTTTCACC
TGCAAAGTCGCAAAAGAAACACTTCTGCTTGGGATTGAACTCCAGACTTT
ACATTTATTTAATTAATGTATCCAAATGTTTTATTTTGATTTACTCTGGA
GTTGTATTTCGATTTTGCGTGAGTTATTTCGGAAGATTTGCTTGGCGTGG
GGCTAAAGCGACAAGAAGAGATAGGCCATGCAGACCCAACCCAGTGCGGT
GCACTAACGCCTACATTCCACAGACAAAATTCAGCGTATTGTTCCGCACG
ATGGACACGGGTTCGGCAAGGCGGGCGGTAGCGGGCGGCACGCATCAAAG
CGACAGCAACGCGCCCGTCAAAGAAACCTAACAGTCAACAGACTGGTCTA
GAGCATGGTAGTTTTAGTATTCTTCCAACAGATAGCCAAACATCTTGGCG
CAACACGAAGCCGTCTCTGATAAACGGAACCAAGGAGCATCTGCCCCAAA
TGTGAGAGATTCGCCATCCGCCAGTGCAAAAGGTGTCTCTAATTCATGCC
ATGCGCCACCCTCCCGTCGGCTCCCGCGTGTCCGAGTACCCAAGGTCTGC
CAGCGACTGGCGTTTCTGCTGTTTGAGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12253:1355..3133+

>mRNA_L-elsbetiae_contig12253.1869.1 ID=mRNA_L-elsbetiae_contig12253.1869.1|Name=mRNA_L-elsbetiae_contig12253.1869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig12253:1355..3133+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGCCAGAGGCCCCCCCCCCCCCCCGGCGGGGCCCCTGGGTTTCCGCGC
TGGGGGAGGCGTCCCGCCGCGCACGCGCCCCCGCCCTCGCCGCGGAGGTG
GAGGAGGAGCGCTGGCGGCGGAAGGACGAGGCCGCCGCGGATGCCCAGCG
CCGACGAAACGCCCAGAGACGAGACCAGAACGCCGCCACGAGGGCCGGCA
TCGCCGCCAAGTACGGCCTCGACCCGGGGAGGAAGCCAGAGGCCCCCCCC
CCCCCCCGGCGGGGCCCCTGGGTTTCCGCGCTGGGGGAGGCGTCCCGCCG
CGCACGCGCCCCCGCCCTCGCCGCGGAGGTGGAGGAGGAGCGCTGGCGGC
GGAAGGACGAGGCCGCCGCGGATGCCCAGCGCCGACGAAACGCCCAGAGA
CGAGACCAGAACGCCGCCACGAGGGCCGGCATCGCCGCCAAGTACGGCCT
CGACCCGGGGAGGTCTGCCAGCGACTGGCGTTTCTGCTGTTTGAGGTCTG
CCAGCGACTGGCGTTTCTGCTGTTTGAG
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