mRNA_L-elsbetiae_contig1225.1867.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1225.1867.1
Unique NamemRNA_L-elsbetiae_contig1225.1867.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1225.1867.1 vs. uniprot
Match: D7FQ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ55_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.760e-23
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 LGLFAVFVPDVPTAVTIQLGRQSFITSKIPDEQRLAPVRSSGLRQLDIHGADDRPAAARKTT-PKYSMC 204
            + LFA+F+P VP  VTIQL RQ+FITSKIPDEQRLA VRS+G R LDI G DDRP A  K   P+YS+C
Sbjct:    1 MALFAMFLPHVPNDVTIQLKRQAFITSKIPDEQRLAHVRSAGQRNLDIKGRDDRPPAKEKIVIPRYSIC 69
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1225.1867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ55_ECTSI2.760e-2366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1225contigL-elsbetiae_contig1225:14890..15966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007430.1
Exons2
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.0404258-CDS-L-elsbetiae_contig1225:14889..150121622815424.0404258-CDS-L-elsbetiae_contig1225:14889..15012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1225 14890..15012 -
1691682891.0947158-CDS-L-elsbetiae_contig1225:14889..150121691682891.0947158-CDS-L-elsbetiae_contig1225:14889..15012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1225 14890..15012 -
1622815424.0511355-CDS-L-elsbetiae_contig1225:15882..159661622815424.0511355-CDS-L-elsbetiae_contig1225:15882..15966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1225 15883..15966 -
1691682891.1050923-CDS-L-elsbetiae_contig1225:15882..159661691682891.1050923-CDS-L-elsbetiae_contig1225:15882..15966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1225 15883..15966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1225.1867.1prot_L-elsbetiae_contig1225.1867.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1225 14890..15966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1225.1867.1

>prot_L-elsbetiae_contig1225.1867.1 ID=prot_L-elsbetiae_contig1225.1867.1|Name=mRNA_L-elsbetiae_contig1225.1867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
LGLFAVFVPDVPTAVTIQLGRQSFITSKIPDEQRLAPVRSSGLRQLDIHG
ADDRPAAARKTTPKYSMC*
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mRNA from alignment at L-elsbetiae_contig1225:14890..15966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1225.1867.1 ID=mRNA_L-elsbetiae_contig1225.1867.1|Name=mRNA_L-elsbetiae_contig1225.1867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1077bp|location=Sequence derived from alignment at L-elsbetiae_contig1225:14890..15966- (Laminarionema elsbetiae ELsaHSoW15)
CTCGGGCTCTTCGCGGTCTTCGTGCCGGACGTGCCGACCGCGGTGACCAT
ACAGCTAGGAAGGCAGAGTTTCATCACCTCCAAGGTCATCGACCAGGTGC
GTTGTCTGTCTGTCTGTCTGTCTGTCTGTAGGTGTCTCCGTGTGTTTGTG
CGTGTGTTTGTGCGAGTGTGTGTTAGGGGAGGGTTTGGGGTGGGTGTGTA
TGTGCGGTTTCTAGACTATGCCGGCAAGGACCTCTCGCCAACCAACAGAC
GAGTTTTGCACAGACGTGCTCGGTTTTTTATTGTTTTTTTTCTCCTCCTC
ATCCATCGTAAGCGGGGATCGCGCGCCAAAATCTAGATACAGGTGTGTCG
TTAAGGATGCGACGGCGGTATGTATGCGGTTTCTATGCTGGGTTCGAGCC
CCGGCGTTACTTAAAACACAGCGACTTTTTCTCACAAAAAAAGTGAGTTT
TTTCTCTGGCTTTTGTTCCTGTCAGTCAGTGGAAAACGCGGCTTGAGGGA
AGAGACGGCCGAAATTTTTCCCGGGTTAAAATTTAAAAGTTGGAAGCAAG
CACCGCAGAAGGAAAGGGTGGGAGCCTCGGGGGGGGGGGAGCTCTTCTGT
GCGACCATGATTTAGAGCTCAGGCGAGATGCCGCCCCCCTGGTGGCAAGG
AGCCCTTCGAGCGCTGGTGGACACAAACGTAATGGACCAACAGAAACAAG
AGCAAAAGGTGCTCTGGCAAAGACTTTTTTCTACGACCAACTGTTTACCA
AATTTGTGTGATAAAGCACGTGCGCGTGCGTGCCCACTTTTATTTTATTT
TATGTTTGCCTCGCCTTGTTAAGAAGCGAGGATCGCGCTTTATCAACAGG
CCTGTTACAATACGTGTTTTCACCGAGCTGTCCACGCATGTACGTACATA
CATATATATGTGAACACCTCAACACGAAAACGCCACGAACAACTCTTCTT
GCAGATCCCTGACGAGCAGCGCCTGGCCCCAGTGCGGTCGTCCGGGCTGC
GGCAGCTGGACATTCACGGGGCCGACGACCGCCCCGCGGCGGCGAGGAAG
ACCACCCCGAAGTACTCCATGTGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1225:14890..15966-

>mRNA_L-elsbetiae_contig1225.1867.1 ID=mRNA_L-elsbetiae_contig1225.1867.1|Name=mRNA_L-elsbetiae_contig1225.1867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig1225:14890..15966- (Laminarionema elsbetiae ELsaHSoW15)
CTCGGGCTCTTCGCGGTCTTCGTGCCGGACGTGCCGACCGCGGTGACCAT
ACAGCTAGGAAGGCAGAGTTTCATCACCTCCAAGCTCGGGCTCTTCGCGG
TCTTCGTGCCGGACGTGCCGACCGCGGTGACCATACAGCTAGGAAGGCAG
AGTTTCATCACCTCCAAGATCCCTGACGAGCAGCGCCTGGCCCCAGTGCG
GTCGTCCGGGCTGCGGCAGCTGGACATTCACGGGGCCGACGACCGCCCCG
CGGCGGCGAGGAAGACCACCCCGAAGTACTCCATGTGCTGAATCCCTGAC
GAGCAGCGCCTGGCCCCAGTGCGGTCGTCCGGGCTGCGGCAGCTGGACAT
TCACGGGGCCGACGACCGCCCCGCGGCGGCGAGGAAGACCACCCCGAAGT
ACTCCATGTGCTGA
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