mRNA_L-elsbetiae_contig1225.1866.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1225.1866.1
Unique NamemRNA_L-elsbetiae_contig1225.1866.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1225.1866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1225contigL-elsbetiae_contig1225:11313..11831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815423.8669252-CDS-L-elsbetiae_contig1225:11312..116421622815423.8669252-CDS-L-elsbetiae_contig1225:11312..11642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1225 11313..11642 +
1691682891.010252-CDS-L-elsbetiae_contig1225:11312..116421691682891.010252-CDS-L-elsbetiae_contig1225:11312..11642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1225 11313..11642 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815423.9048412-UTR-L-elsbetiae_contig1225:11642..118311622815423.9048412-UTR-L-elsbetiae_contig1225:11642..11831Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1225 11643..11831 +
1691682891.0199878-UTR-L-elsbetiae_contig1225:11642..118311691682891.0199878-UTR-L-elsbetiae_contig1225:11642..11831Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1225 11643..11831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1225.1866.1prot_L-elsbetiae_contig1225.1866.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1225 11313..11642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1225.1866.1

>prot_L-elsbetiae_contig1225.1866.1 ID=prot_L-elsbetiae_contig1225.1866.1|Name=mRNA_L-elsbetiae_contig1225.1866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
RWLNSRWWGGGGGGEGRERGYYYFPSGSVVVVFLERKCCFFMCVCGRKVC
FTGNIDMLVVYVGVLPYSLVLFRWGVVNYALFSVFIRRRSVSRPPSSSTL
HIGRRGISV*
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mRNA from alignment at L-elsbetiae_contig1225:11313..11831+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1225.1866.1 ID=mRNA_L-elsbetiae_contig1225.1866.1|Name=mRNA_L-elsbetiae_contig1225.1866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=519bp|location=Sequence derived from alignment at L-elsbetiae_contig1225:11313..11831+ (Laminarionema elsbetiae ELsaHSoW15)
CGTTGGTTGAATTCTCGGTGGTGGGGGGGGGGGGGGGGGGGCGAAGGAAG
AGAGAGGGGGTACTATTACTTTCCGAGTGGTAGTGTGGTGGTGGTATTTT
TAGAAAGAAAATGTTGTTTTTTTATGTGTGTTTGTGGACGAAAAGTGTGT
TTTACAGGCAACATCGACATGCTTGTTGTTTATGTGGGGGTTTTGCCGTA
TTCTTTGGTTCTATTCCGTTGGGGGGTCGTAAATTACGCGCTGTTTTCTG
TTTTTATTCGGCGGCGGAGTGTATCCCGCCCGCCATCATCCAGCACGCTA
CACATAGGCAGGCGTGGCATTTCTGTATAAGTCTCGCACACTGGTTTGGA
AATTTGTAGTCTTACGTAGCGATTGATACAATCAGAGTCAGTAGGGTCGA
GAAACAGTGCGCGGGAGAGGGGGGTTGACAGAGACTAGGTTGAGATGGAT
AAGTAGGGCTCTTGCGTTCATTATTTTCGGATGATACCGACCTTCCCCCC
CCCCCCCCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1225:11313..11831+

>mRNA_L-elsbetiae_contig1225.1866.1 ID=mRNA_L-elsbetiae_contig1225.1866.1|Name=mRNA_L-elsbetiae_contig1225.1866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig1225:11313..11831+ (Laminarionema elsbetiae ELsaHSoW15)
CGTTGGTTGAATTCTCGGTGGTGGGGGGGGGGGGGGGGGGGCGAAGGAAG
AGAGAGGGGGTACTATTACTTTCCGAGTGGTAGTGTGGTGGTGGTATTTT
TAGAAAGAAAATGTTGTTTTTTTATGTGTGTTTGTGGACGAAAAGTGTGT
TTTACAGGCAACATCGACATGCTTGTTGTTTATGTGGGGGTTTTGCCGTA
TTCTTTGGTTCTATTCCGTTGGGGGGTCGTAAATTACGCGCTGTTTTCTG
TTTTTATTCGGCGGCGGAGTGTATCCCGCCCGCCATCATCCAGCACGCTA
CACATAGGCAGGCGTGGCATTTCTGTATAACGTTGGTTGAATTCTCGGTG
GTGGGGGGGGGGGGGGGGGGGCGAAGGAAGAGAGAGGGGGTACTATTACT
TTCCGAGTGGTAGTGTGGTGGTGGTATTTTTAGAAAGAAAATGTTGTTTT
TTTATGTGTGTTTGTGGACGAAAAGTGTGTTTTACAGGCAACATCGACAT
GCTTGTTGTTTATGTGGGGGTTTTGCCGTATTCTTTGGTTCTATTCCGTT
GGGGGGTCGTAAATTACGCGCTGTTTTCTGTTTTTATTCGGCGGCGGAGT
GTATCCCGCCCGCCATCATCCAGCACGCTACACATAGGCAGGCGTGGCAT
TTCTGTATAA
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