mRNA_L-elsbetiae_contig12248.1863.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12248.1863.1
Unique NamemRNA_L-elsbetiae_contig12248.1863.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12248.1863.1 vs. uniprot
Match: A0A6H5KF56_9PHAE (TRAF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF56_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.600e-49
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 2
Query:   83 QDRAYGHNNPGICPWYRVQCKCCEQEVGRKEWDDGEHVCPVQRRVDVLAKHASGAGKLRNRQWLIVYGYIGSGGKKGTAEGWEDPKDDAFHGVNPMCAM 379
            Q +  G NN G CPWYRV CK C QEVGR+EWD GEH CPVQRRVDVLAKHASGAGKLRNRQWLIVYGY+GSGGKKGTAEGWED KD  FHGVNPMCA+
Sbjct:  883 QGKERGRNNLGTCPWYRVLCKSCGQEVGRREWDAGEHNCPVQRRVDVLAKHASGAGKLRNRQWLIVYGYLGSGGKKGTAEGWED-KDAHFHGVNPMCAI 980          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12248.1863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KF56_9PHAE1.600e-4981.82TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12248contigL-elsbetiae_contig12248:3541..5067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size382
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12248.1863.1prot_L-elsbetiae_contig12248.1863.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12248 3542..5067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815423.721952-CDS-L-elsbetiae_contig12248:3541..36551622815423.721952-CDS-L-elsbetiae_contig12248:3541..3655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12248 3542..3655 -
1691682890.9077837-CDS-L-elsbetiae_contig12248:3541..36551691682890.9077837-CDS-L-elsbetiae_contig12248:3541..3655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12248 3542..3655 -
1622815423.7326293-CDS-L-elsbetiae_contig12248:4495..46021622815423.7326293-CDS-L-elsbetiae_contig12248:4495..4602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12248 4496..4602 -
1691682890.9220455-CDS-L-elsbetiae_contig12248:4495..46021691682890.9220455-CDS-L-elsbetiae_contig12248:4495..4602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12248 4496..4602 -
1622815423.7440352-CDS-L-elsbetiae_contig12248:4907..50671622815423.7440352-CDS-L-elsbetiae_contig12248:4907..5067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12248 4908..5067 -
1691682890.9330509-CDS-L-elsbetiae_contig12248:4907..50671691682890.9330509-CDS-L-elsbetiae_contig12248:4907..5067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12248 4908..5067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12248.1863.1

>prot_L-elsbetiae_contig12248.1863.1 ID=prot_L-elsbetiae_contig12248.1863.1|Name=mRNA_L-elsbetiae_contig12248.1863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
RGISINDDGCSRGPWWKRRWRGEGGAGARQGVRSQQPGDLPVVSGPVQVL
RAGGGQEGVGRRGARMPSPAEGGRLGKARFWGREASKPTMADSVRLHRKR
GQEGHGGGLGGPKRRRLPRGEPHVRHA
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mRNA from alignment at L-elsbetiae_contig12248:3541..5067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12248.1863.1 ID=mRNA_L-elsbetiae_contig12248.1863.1|Name=mRNA_L-elsbetiae_contig12248.1863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1527bp|location=Sequence derived from alignment at L-elsbetiae_contig12248:3541..5067- (Laminarionema elsbetiae ELsaHSoW15)
CGCGGAATCAGCATCAACGACGATGGCTGCAGCCGAGGACCGTGGTGGAA ACGGCGGTGGCGCGGAGAAGGAGGGGCCGGAGCAAGACAGGGCGTACGGT CACAACAACCCGGGGATCTGCCCGTGGTATCGGGTCCAGTGCAAGTGTTG CGAGCAGGAGGTGCGTGGGACGCGCGTATTTATCTGCATACGAGTAGATT TGTATTTCGCGTGTTGGTTCATTTTGGTTTCTTCGCCGACCGTCTTGTGG GGGCCCGGCCGAGGCCCGGCCAACAAGACCCGACGTTTGTTTCTTCTAGT TGTCGCCCCCCCCCCCCGGGTCATAACTGCACACAACAAACCCCTTTAGG CCAGCGTTCGATCTTGTGTTGCATCATGCATGCTGCGCGGGGAAGAGGTC GATACTTGGAAGCGGGAAGCGGACTAATCCCATGCCATGGATTGGTTTGC GGTGATTTGACGCAGGTGGGCAGGAAGGAGTGGGACGACGGGGAGCACGT ATGCCCAGTCCAGCGGAGGGTGGACGTCTTGGCAAAGCACGCTTCTGGGG CCGGGAAGCTTCGAAACCGACAGTAAGCGTGGATGGTACTATCCTGTGTG CGCGTGTGTAGAAGAGTGGAGGGTGGGGGGATATCCTCTTTGGTTGCTCA ACTACCGTGCCGTTTGACCTCCGCGACCACGGTGACCACGCGTGTCTCCG TGAGTTTGTCTGCCAAAGAGTTTTGTTTGGTCTGTTTGTGGCAAGCGTTG TTGCGCGATTTTTTGTCCTTTTTTTTTTTTCGCGTTCCGCGCCGCGCCGT AGCCACTGCTGTTGCTCTCGAAAGGCCTGGGGGGGGTGCCATTGCCCGTT CCCGTCGCCAGCACCCCTTTTGGGGCTCATCATTTCCGACAAAATGACAC ACATCTACATACCCGAAGTTCTCAAATAGCGATGGGACAGGTGTCAAGCG CTACATAAATAGGGAAACGCTAGAAACAAATGCCGACAAATCGGTCCCTT CATCATCTTCTTGCCGTAGTTACGGTGGTCGCTCGGCCGGCGTACAACAT ACATACCTCTTCTCCTCTCTCCTTTTATCTTCCCTCGTCTCTTCCGACCT GCGCTCTCTCTTCACGCCTCTTTCTCCGCCCCGTCGTGCCCCTACCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTGGGGGAACCCCAGG GGGGTGATGTTGACCGGCAAACCGGAGGGGGGGGAAGAAGGGGGCGGGGG GGGGGGGGGGGGGGCCCAAANNNNNNNNNNCCCTTCTCCTTTTTTCTTCC CCCGTCTCTTCCCCCCTGCCCCCTCTCTTCCCCCCTCTTTCCCCCCCCCG TCGTGCCCCCCCCCCCCCCCCCCCCCCCGCCGCCGCCGCCGCCACCGCTT GGCGGACACCAGATGGCTGATAGTGTACGGCTACATCGGAAGCGGGGGCA AGAAGGGCACGGCGGAGGGCTGGGAGGACCCAAAAGACGACGCCTTCCAC GGGGTGAACCCCATGTGCGCCATGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12248:3541..5067-

>mRNA_L-elsbetiae_contig12248.1863.1 ID=mRNA_L-elsbetiae_contig12248.1863.1|Name=mRNA_L-elsbetiae_contig12248.1863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig12248:3541..5067- (Laminarionema elsbetiae ELsaHSoW15)
CGCGGAATCAGCATCAACGACGATGGCTGCAGCCGAGGACCGTGGTGGAA
ACGGCGGTGGCGCGGAGAAGGAGGGGCCGGAGCAAGACAGGGCGTACGGT
CACAACAACCCGGGGATCTGCCCGTGGTATCGGGTCCAGTGCAAGTGTTG
CGAGCAGGAGCGCGGAATCAGCATCAACGACGATGGCTGCAGCCGAGGAC
CGTGGTGGAAACGGCGGTGGCGCGGAGAAGGAGGGGCCGGAGCAAGACAG
GGCGTACGGTCACAACAACCCGGGGATCTGCCCGTGGTATCGGGTCCAGT
GCAAGTGTTGCGAGCAGGAGGTGGGCAGGAAGGAGTGGGACGACGGGGAG
CACGTATGCCCAGTCCAGCGGAGGGTGGACGTCTTGGCAAAGCACGCTTC
TGGGGCCGGGAAGCTTCGAAACCGACAGTGGGCAGGAAGGAGTGGGACGA
CGGGGAGCACGTATGCCCAGTCCAGCGGAGGGTGGACGTCTTGGCAAAGC
ACGCTTCTGGGGCCGGGAAGCTTCGAAACCGACAATGGCTGATAGTGTAC
GGCTACATCGGAAGCGGGGGCAAGAAGGGCACGGCGGAGGGCTGGGAGGA
CCCAAAAGACGACGCCTTCCACGGGGTGAACCCCATGTGCGCCATGCCAT
GGCTGATAGTGTACGGCTACATCGGAAGCGGGGGCAAGAAGGGCACGGCG
GAGGGCTGGGAGGACCCAAAAGACGACGCCTTCCACGGGGTGAACCCCAT
GTGCGCCATGCC
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