|
Homology
BLAST of mRNA_L-elsbetiae_contig12248.1863.1 vs. uniprot
Match: A0A6H5KF56_9PHAE (TRAF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF56_9PHAE) HSP 1 Score: 178 bits (452), Expect = 1.600e-49 Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 2
Query: 83 QDRAYGHNNPGICPWYRVQCKCCEQEVGRKEWDDGEHVCPVQRRVDVLAKHASGAGKLRNRQWLIVYGYIGSGGKKGTAEGWEDPKDDAFHGVNPMCAM 379
Q + G NN G CPWYRV CK C QEVGR+EWD GEH CPVQRRVDVLAKHASGAGKLRNRQWLIVYGY+GSGGKKGTAEGWED KD FHGVNPMCA+
Sbjct: 883 QGKERGRNNLGTCPWYRVLCKSCGQEVGRREWDAGEHNCPVQRRVDVLAKHASGAGKLRNRQWLIVYGYLGSGGKKGTAEGWED-KDAHFHGVNPMCAI 980
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 382 |
Cds size | 381 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815423.721952-CDS-L-elsbetiae_contig12248:3541..3655 | 1622815423.721952-CDS-L-elsbetiae_contig12248:3541..3655 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12248 3542..3655 - |
1691682890.9077837-CDS-L-elsbetiae_contig12248:3541..3655 | 1691682890.9077837-CDS-L-elsbetiae_contig12248:3541..3655 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12248 3542..3655 - |
1622815423.7326293-CDS-L-elsbetiae_contig12248:4495..4602 | 1622815423.7326293-CDS-L-elsbetiae_contig12248:4495..4602 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12248 4496..4602 - |
1691682890.9220455-CDS-L-elsbetiae_contig12248:4495..4602 | 1691682890.9220455-CDS-L-elsbetiae_contig12248:4495..4602 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12248 4496..4602 - |
1622815423.7440352-CDS-L-elsbetiae_contig12248:4907..5067 | 1622815423.7440352-CDS-L-elsbetiae_contig12248:4907..5067 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12248 4908..5067 - |
1691682890.9330509-CDS-L-elsbetiae_contig12248:4907..5067 | 1691682890.9330509-CDS-L-elsbetiae_contig12248:4907..5067 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12248 4908..5067 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12248.1863.1 >prot_L-elsbetiae_contig12248.1863.1 ID=prot_L-elsbetiae_contig12248.1863.1|Name=mRNA_L-elsbetiae_contig12248.1863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
RGISINDDGCSRGPWWKRRWRGEGGAGARQGVRSQQPGDLPVVSGPVQVL RAGGGQEGVGRRGARMPSPAEGGRLGKARFWGREASKPTMADSVRLHRKR GQEGHGGGLGGPKRRRLPRGEPHVRHA back to topmRNA from alignment at L-elsbetiae_contig12248:3541..5067- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12248.1863.1 ID=mRNA_L-elsbetiae_contig12248.1863.1|Name=mRNA_L-elsbetiae_contig12248.1863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1527bp|location=Sequence derived from alignment at L-elsbetiae_contig12248:3541..5067- (Laminarionema elsbetiae ELsaHSoW15) CGCGGAATCAGCATCAACGACGATGGCTGCAGCCGAGGACCGTGGTGGAA
ACGGCGGTGGCGCGGAGAAGGAGGGGCCGGAGCAAGACAGGGCGTACGGT
CACAACAACCCGGGGATCTGCCCGTGGTATCGGGTCCAGTGCAAGTGTTG
CGAGCAGGAGGTGCGTGGGACGCGCGTATTTATCTGCATACGAGTAGATT
TGTATTTCGCGTGTTGGTTCATTTTGGTTTCTTCGCCGACCGTCTTGTGG
GGGCCCGGCCGAGGCCCGGCCAACAAGACCCGACGTTTGTTTCTTCTAGT
TGTCGCCCCCCCCCCCCGGGTCATAACTGCACACAACAAACCCCTTTAGG
CCAGCGTTCGATCTTGTGTTGCATCATGCATGCTGCGCGGGGAAGAGGTC
GATACTTGGAAGCGGGAAGCGGACTAATCCCATGCCATGGATTGGTTTGC
GGTGATTTGACGCAGGTGGGCAGGAAGGAGTGGGACGACGGGGAGCACGT
ATGCCCAGTCCAGCGGAGGGTGGACGTCTTGGCAAAGCACGCTTCTGGGG
CCGGGAAGCTTCGAAACCGACAGTAAGCGTGGATGGTACTATCCTGTGTG
CGCGTGTGTAGAAGAGTGGAGGGTGGGGGGATATCCTCTTTGGTTGCTCA
ACTACCGTGCCGTTTGACCTCCGCGACCACGGTGACCACGCGTGTCTCCG
TGAGTTTGTCTGCCAAAGAGTTTTGTTTGGTCTGTTTGTGGCAAGCGTTG
TTGCGCGATTTTTTGTCCTTTTTTTTTTTTCGCGTTCCGCGCCGCGCCGT
AGCCACTGCTGTTGCTCTCGAAAGGCCTGGGGGGGGTGCCATTGCCCGTT
CCCGTCGCCAGCACCCCTTTTGGGGCTCATCATTTCCGACAAAATGACAC
ACATCTACATACCCGAAGTTCTCAAATAGCGATGGGACAGGTGTCAAGCG
CTACATAAATAGGGAAACGCTAGAAACAAATGCCGACAAATCGGTCCCTT
CATCATCTTCTTGCCGTAGTTACGGTGGTCGCTCGGCCGGCGTACAACAT
ACATACCTCTTCTCCTCTCTCCTTTTATCTTCCCTCGTCTCTTCCGACCT
GCGCTCTCTCTTCACGCCTCTTTCTCCGCCCCGTCGTGCCCCTACCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTGGGGGAACCCCAGG
GGGGTGATGTTGACCGGCAAACCGGAGGGGGGGGAAGAAGGGGGCGGGGG
GGGGGGGGGGGGGGCCCAAANNNNNNNNNNCCCTTCTCCTTTTTTCTTCC
CCCGTCTCTTCCCCCCTGCCCCCTCTCTTCCCCCCTCTTTCCCCCCCCCG
TCGTGCCCCCCCCCCCCCCCCCCCCCCCGCCGCCGCCGCCGCCACCGCTT
GGCGGACACCAGATGGCTGATAGTGTACGGCTACATCGGAAGCGGGGGCA
AGAAGGGCACGGCGGAGGGCTGGGAGGACCCAAAAGACGACGCCTTCCAC
GGGGTGAACCCCATGTGCGCCATGCCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12248:3541..5067- >mRNA_L-elsbetiae_contig12248.1863.1 ID=mRNA_L-elsbetiae_contig12248.1863.1|Name=mRNA_L-elsbetiae_contig12248.1863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig12248:3541..5067- (Laminarionema elsbetiae ELsaHSoW15) CGCGGAATCAGCATCAACGACGATGGCTGCAGCCGAGGACCGTGGTGGAA ACGGCGGTGGCGCGGAGAAGGAGGGGCCGGAGCAAGACAGGGCGTACGGT CACAACAACCCGGGGATCTGCCCGTGGTATCGGGTCCAGTGCAAGTGTTG CGAGCAGGAGCGCGGAATCAGCATCAACGACGATGGCTGCAGCCGAGGAC CGTGGTGGAAACGGCGGTGGCGCGGAGAAGGAGGGGCCGGAGCAAGACAG GGCGTACGGTCACAACAACCCGGGGATCTGCCCGTGGTATCGGGTCCAGT GCAAGTGTTGCGAGCAGGAGGTGGGCAGGAAGGAGTGGGACGACGGGGAG CACGTATGCCCAGTCCAGCGGAGGGTGGACGTCTTGGCAAAGCACGCTTC TGGGGCCGGGAAGCTTCGAAACCGACAGTGGGCAGGAAGGAGTGGGACGA CGGGGAGCACGTATGCCCAGTCCAGCGGAGGGTGGACGTCTTGGCAAAGC ACGCTTCTGGGGCCGGGAAGCTTCGAAACCGACAATGGCTGATAGTGTAC GGCTACATCGGAAGCGGGGGCAAGAAGGGCACGGCGGAGGGCTGGGAGGA CCCAAAAGACGACGCCTTCCACGGGGTGAACCCCATGTGCGCCATGCCAT GGCTGATAGTGTACGGCTACATCGGAAGCGGGGGCAAGAAGGGCACGGCG GAGGGCTGGGAGGACCCAAAAGACGACGCCTTCCACGGGGTGAACCCCAT GTGCGCCATGCC back to top
|