mRNA_L-elsbetiae_contig12243.1861.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig12243.1861.1
Unique Name	mRNA_L-elsbetiae_contig12243.1861.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: D7FSF1_ECTSI (Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF1_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 2.520e-65
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNR 351
            G +GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+IDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV M + N+
Sbjct:   13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNK 120

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: A0A7S2CHD5_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CHD5_9STRA)

HSP 1 Score: 202 bits (514), Expect = 4.280e-64
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNR 351
            G +GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+NIDNRQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEA+QNSN NMV M + N+
Sbjct:   13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEAKQNSNPNMVIMLIGNK 120

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: A0A835Z1V8_9STRA (Rab2A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V8_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.350e-63
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNR 351
            G +GVGKSCLLLQFTDKRFQP+HDLTIGVEFGARMIN+D RQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV M + N+
Sbjct:   13 GDTGVGKSCLLLQFTDKRFQPLHDLTIGVEFGARMINVDARQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNK 120

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: A0A6V1NY85_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NY85_HETAK)

HSP 1 Score: 201 bits (510), Expect = 1.790e-63
Identity = 97/109 (88.99%), Postives = 104/109 (95.41%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNRV 354
            G +GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+ID+R++KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV M + N+ 
Sbjct:   13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIDIDSRKIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKA 121

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: M4B5K5_HYAAE (Uncharacterized protein n=26 Tax=Oomycota TaxID=4762 RepID=M4B5K5_HYAAE)

HSP 1 Score: 200 bits (508), Expect = 3.610e-63
Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNR 351
            G +GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINI+N+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM  M + N+
Sbjct:   13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIENKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNK 120

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: A0A2R5GRM2_9STRA (Ras-related protein Rab-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRM2_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.100e-63
Identity = 96/109 (88.07%), Postives = 105/109 (96.33%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNRV 354
            G +GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+IDNRQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQN+N+NMV + V N++
Sbjct:   13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNANANMVILLVGNKL 121

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: A0A485LBB8_9STRA (Aste57867_18783 protein n=7 Tax=Oomycota TaxID=4762 RepID=A0A485LBB8_9STRA)

HSP 1 Score: 199 bits (507), Expect = 5.290e-63
Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNR 351
            G +GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+IDN+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM  M + N+
Sbjct:   13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNK 120

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: A0A024UMG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMG6_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.270e-62
Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNR 351
            G +GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINID++Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM  M + N+
Sbjct:   41 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDSKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNK 148

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: A0A7S2V0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L3_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.910e-62
Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNR 351
            G +GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINID++Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TF+HLTRWLEEARQNSNSNMV M + N+
Sbjct:   43 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDSKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFSHLTRWLEEARQNSNSNMVIMLIGNK 150

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BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Match: A0A2D4BXC9_PYTIN (Rab2 family GTPase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXC9_PYTIN)

HSP 1 Score: 201 bits (512), Expect = 4.170e-62
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1

Query:   28 GSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVSMNVPNR 351
            G +GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDN+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM  M + N+
Sbjct:   13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNK 120

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig12243.1861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FSF1_ECTSI	2.520e-65	92.59	Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=...	[more]
A0A7S2CHD5_9STRA	4.280e-64	89.81	Hypothetical protein n=3 Tax=Dictyochophyceae TaxI...	[more]
A0A835Z1V8_9STRA	1.350e-63	89.81	Rab2A, rab family GTPase n=1 Tax=Tribonema minus T...	[more]
A0A6V1NY85_HETAK	1.790e-63	88.99	Hypothetical protein n=2 Tax=Heterosigma akashiwo ...	[more]
M4B5K5_HYAAE	3.610e-63	88.89	Uncharacterized protein n=26 Tax=Oomycota TaxID=47...	[more]
A0A2R5GRM2_9STRA	4.100e-63	88.07	Ras-related protein Rab-2 n=1 Tax=Hondaea fermenta...	[more]
A0A485LBB8_9STRA	5.290e-63	88.89	Aste57867_18783 protein n=7 Tax=Oomycota TaxID=476...	[more]
A0A024UMG6_9STRA	1.270e-62	88.89	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A7S2V0L3_9STRA	1.910e-62	88.89	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A2D4BXC9_PYTIN	4.170e-62	89.81	Rab2 family GTPase, putative n=1 Tax=Pythium insid...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig12243	contig	L-elsbetiae_contig12243:2861..4038 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	206.5
Seed ortholog evalue	7.1e-51
Seed eggNOG ortholog	2880.D7FSF1
KEGG ko	ko:K07877
KEGG Pathway	ko04152,map04152
Hectar predicted targeting category	mitochondrion
GOs	GO:0000139,GO:0000331,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0006970,GO:0008150,GO:0008219,GO:0009628,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0030587,GO:0031090,GO:0031164,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0099120
EggNOG free text desc.	GTPase activity
EggNOG OGs	COG1100@1,KOG0098@2759
COG Functional cat.	F
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko04031,ko04131,ko04147
Exons	2
Model size	357
Cds size	357
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815423.5414138-CDS-L-elsbetiae_contig12243:2860..3037	1622815423.5414138-CDS-L-elsbetiae_contig12243:2860..3037	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12243 2861..3037 +
1691682890.8301938-CDS-L-elsbetiae_contig12243:2860..3037	1691682890.8301938-CDS-L-elsbetiae_contig12243:2860..3037	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12243 2861..3037 +
1622815423.553717-CDS-L-elsbetiae_contig12243:3858..4038	1622815423.553717-CDS-L-elsbetiae_contig12243:3858..4038	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12243 3859..4038 +
1691682890.8406923-CDS-L-elsbetiae_contig12243:3858..4038	1691682890.8406923-CDS-L-elsbetiae_contig12243:3858..4038	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12243 3859..4038 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig12243.1861.1	prot_L-elsbetiae_contig12243.1861.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig12243 2861..4038 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig12243:2861..4038+
coding sequence from alignment at L-elsbetiae_contig12243:2861..4038+

protein sequence of mRNA_L-elsbetiae_contig12243.1861.1

>prot_L-elsbetiae_contig12243.1861.1 ID=prot_L-elsbetiae_contig12243.1861.1|Name=mRNA_L-elsbetiae_contig12243.1861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MRVLRVTLPGSSGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNR
QMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEE
ARQNSNSNMVSMNVPNRV*

mRNA from alignment at L-elsbetiae_contig12243:2861..4038+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig12243.1861.1 ID=mRNA_L-elsbetiae_contig12243.1861.1|Name=mRNA_L-elsbetiae_contig12243.1861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1178bp|location=Sequence derived from alignment at L-elsbetiae_contig12243:2861..4038+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGTGTTGCGTGTTACGCTGCCCGGTTCGTCAGGCGTCGGCAAGTC
ATGTTTGCTGCTGCAGTTCACGGACAAGCGGTTCCAGCCCGTGCACGACC
TCACAATCGGCGTGGAGTTTGGGGCGCGGATGATCAACATCGACAACCGA
CAGATGAAGCTTCAGATCTGGGATACGGTGGGTGCTGTCGCGTGGTGTGT
TGTGCTCCCCTTACTGCGAGAGAGGATAGAGAGGGGGGGGGAGAGAGAGA
AAGAGAGAGACAGACAGACAGACAGACAGACAGACAGACAGAGGGAAAGA
GCGGAGTCTTGCAGGAACATTCGTTCTCGAGGTTAGCCGTACGTGTTGCT
TTCGTCCTTGAAAAGTCTTGTAAAAGACATCCATCCGAAAGAGACACGGG
AAGCGCGAACGCGGGATACGCCGTAAAAGAGTGCGGGCGGTCTCTTCTAT
CACACGGGCTGAGTGCAACAGATACTTTGGGAATATTCTAGGAATGTGTT
GCAGAAGACAGTTACACACGGAGCATGCCTCACCTTGGGGCGAAGAGAAG
AAATGCCCACCAGGTTCGGGCGTTCGTGTATACAATAATAGCCAGAGCGC
TGTAGAGGGAGGGAGAGGTCACCCGTACGCGCCTAACCCGCACCGACGTC
CAACCGGGGGCCGTGGGGCCGAGAAATCGGCGCCGCGAACGCGGCTGCAC
CGCTTCCGGGGGGGGGCGCGTGGTCCGCAGGTCAGAACGTGGTCCCTACC
GCACACACGCTTGACCAATCAGAGGGCGCATACGGCGTAGTCCTAAAGAT
CCCCTTATCAGGGTGTAAACAGTACGTACGTACTGCGCGGAAAGCCCCCC
GCAAAGAGGCATCGAAAAATGGCCGCTGGCCAGAACACAGAAAAAGAAAT
CGTGGTATGTACGATCACTTCGCTCGACAAAACGTGCACACACCCGCACC
ACCTTGATACCGATTCGCCCACCGCCGCGTGTGCCATTATCATGGCAGGC
GGGGCAAGAGTCGTTCCGGTCCATCACGCGGTCGTACTACCGGGGGGCGG
CGGGGGCCTTGCTGGTGTACGACATCACACGCCGAGACACGTTTAACCAC
CTCACGCGCTGGCTGGAAGAGGCCCGGCAAAACTCCAACTCCAACATGGT
GAGTATGAATGTACCAAACAGAGTTTAG

Coding sequence (CDS) from alignment at L-elsbetiae_contig12243:2861..4038+

>mRNA_L-elsbetiae_contig12243.1861.1 ID=mRNA_L-elsbetiae_contig12243.1861.1|Name=mRNA_L-elsbetiae_contig12243.1861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig12243:2861..4038+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGTGTTGCGTGTTACGCTGCCCGGTTCGTCAGGCGTCGGCAAGTC
ATGTTTGCTGCTGCAGTTCACGGACAAGCGGTTCCAGCCCGTGCACGACC
TCACAATCGGCGTGGAGTTTGGGGCGCGGATGATCAACATCGACAACCGA
CAGATGAAGCTTCAGATCTGGGATACGATGCGTGTGTTGCGTGTTACGCT
GCCCGGTTCGTCAGGCGTCGGCAAGTCATGTTTGCTGCTGCAGTTCACGG
ACAAGCGGTTCCAGCCCGTGCACGACCTCACAATCGGCGTGGAGTTTGGG
GCGCGGATGATCAACATCGACAACCGACAGATGAAGCTTCAGATCTGGGA
TACGGCGGGGCAAGAGTCGTTCCGGTCCATCACGCGGTCGTACTACCGGG
GGGCGGCGGGGGCCTTGCTGGTGTACGACATCACACGCCGAGACACGTTT
AACCACCTCACGCGCTGGCTGGAAGAGGCCCGGCAAAACTCCAACTCCAA
CATGGTGAGTATGAATGTACCAAACAGAGTTTAGGCGGGGCAAGAGTCGT
TCCGGTCCATCACGCGGTCGTACTACCGGGGGGCGGCGGGGGCCTTGCTG
GTGTACGACATCACACGCCGAGACACGTTTAACCACCTCACGCGCTGGCT
GGAAGAGGCCCGGCAAAACTCCAACTCCAACATGGTGAGTATGAATGTAC
CAAACAGAGTTTAG