mRNA_L-elsbetiae_contig1224.1857.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1224.1857.1
Unique NamemRNA_L-elsbetiae_contig1224.1857.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: K0TNV0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNV0_THAOC)

HSP 1 Score: 128 bits (322), Expect = 1.090e-37
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 201
            M ANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE
Sbjct:    1 MDANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 67
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BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: A0A7S2XQ82_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ82_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.220e-35
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 192
            MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA
Sbjct:   94 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 157
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BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: A0A7S2RG20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG20_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.850e-35
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEG 198
            MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG E+ +G
Sbjct:   26 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMESTDG 91
[Close]
BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: A0A7S2X5D0_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2X5D0_PROMC)

HSP 1 Score: 123 bits (309), Expect = 6.800e-35
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 201
            M++N+TAIAE  SR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA+GE
Sbjct:   55 MISNSTAIAEVFSRVDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADGE 121
[Close]
BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: TBA2_PELFA (Tubulin alpha-2 chain n=45 Tax=cellular organisms TaxID=131567 RepID=TBA2_PELFA)

HSP 1 Score: 131 bits (329), Expect = 8.510e-35
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 201
            MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE
Sbjct:  377 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 443
[Close]
BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: A0A6G0R1R0_9STRA (Tubulin_C domain-containing protein (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0R1R0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 9.610e-35
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 201
            M++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAEGE
Sbjct:   45 MISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGE 111
[Close]
BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: A0A7S3TAU1_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3TAU1_9SPIT)

HSP 1 Score: 122 bits (306), Expect = 1.050e-34
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 201
            M++N+TAIAE  SRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE+AEGE
Sbjct:   35 MISNSTAIAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGE 101
[Close]
BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: A0A7S3KUS7_EUPCR (Hypothetical protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7S3KUS7_EUPCR)

HSP 1 Score: 123 bits (308), Expect = 1.260e-34
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 201
            M++N+TAIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG ETAEGE
Sbjct:   67 MISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETAEGE 133
[Close]
BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: A0A7S0Q113_9EUKA (Tubulin alpha chain n=24 Tax=Eukaryota TaxID=2759 RepID=A0A7S0Q113_9EUKA)

HSP 1 Score: 130 bits (326), Expect = 2.310e-34
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 201
            MV+NTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE
Sbjct:  377 MVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 443
[Close]
BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Match: Q7Y246_GOSBA (Alpha-tubulin (Fragment) n=1 Tax=Gossypium barbadense TaxID=3634 RepID=Q7Y246_GOSBA)

HSP 1 Score: 120 bits (302), Expect = 4.010e-34
Identity = 58/66 (87.88%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEG 198
            M++N+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE+AEG
Sbjct:   35 MISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG 100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1224.1857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0TNV0_THAOC1.090e-3798.51Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2XQ82_9STRA1.220e-35100.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2RG20_9STRA1.850e-3593.94Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2X5D0_PROMC6.800e-3589.55Hypothetical protein n=1 Tax=Prorocentrum micans T... [more]
TBA2_PELFA8.510e-35100.00Tubulin alpha-2 chain n=45 Tax=cellular organisms ... [more]
A0A6G0R1R0_9STRA9.610e-3591.04Tubulin_C domain-containing protein (Fragment) n=4... [more]
A0A7S3TAU1_9SPIT1.050e-3489.55Hypothetical protein (Fragment) n=2 Tax=Sar TaxID=... [more]
A0A7S3KUS7_EUPCR1.260e-3491.04Hypothetical protein n=2 Tax=cellular organisms Ta... [more]
A0A7S0Q113_9EUKA2.310e-3498.51Tubulin alpha chain n=24 Tax=Eukaryota TaxID=2759 ... [more]
Q7Y246_GOSBA4.010e-3487.88Alpha-tubulin (Fragment) n=1 Tax=Gossypium barbade... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1224contigL-elsbetiae_contig1224:87..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue5.6e-29
Seed eggNOG ortholog2880.D7G923
KEGG koko:K07374
KEGG Pathwayko04145,ko04210,ko04530,ko04540,ko05130,map04145,map04210,map04530,map04540,map05130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of cytoskeleton
EggNOG OGsCOG5023@1,KOG1376@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04147,ko04812
Exons2
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.970964-CDS-L-elsbetiae_contig1224:86..1161622815422.970964-CDS-L-elsbetiae_contig1224:86..116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1224 87..116 +
1691682890.557594-CDS-L-elsbetiae_contig1224:86..1161691682890.557594-CDS-L-elsbetiae_contig1224:86..116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1224 87..116 +
1622815422.9919386-CDS-L-elsbetiae_contig1224:280..4511622815422.9919386-CDS-L-elsbetiae_contig1224:280..451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1224 281..451 +
1691682890.5734792-CDS-L-elsbetiae_contig1224:280..4511691682890.5734792-CDS-L-elsbetiae_contig1224:280..451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1224 281..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1224.1857.1prot_L-elsbetiae_contig1224.1857.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1224 87..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1224.1857.1

>prot_L-elsbetiae_contig1224.1857.1 ID=prot_L-elsbetiae_contig1224.1857.1|Name=mRNA_L-elsbetiae_contig1224.1857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA
ALEKDYEEVGAETAEGE
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mRNA from alignment at L-elsbetiae_contig1224:87..451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1224.1857.1 ID=mRNA_L-elsbetiae_contig1224.1857.1|Name=mRNA_L-elsbetiae_contig1224.1857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=365bp|location=Sequence derived from alignment at L-elsbetiae_contig1224:87..451+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGCCAACACCACCGCCATCGCCGAGGTATGTGTGTAGATGTACAT
GTGTCAAATTGTTTTTGTAAGTCACCCTGTCTTTCTTCTGTTCATTTTAT
TGAGCGCGACGAAGTTCCGCGTTTTCATGATCACCTCATTTTGACTTCCT
TTCGCCCCTTTGCCTTAACCCCCCCCGTCCCATAAACAACGCAGGCCCTG
TCTCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGT
GCACTGGTACGTGGGTGAGGGCATGGAGGAAGGCGAGTTCTCCGAGGCTC
GCGAGGACCTCGCGGCCCTCGAGAAGGACTACGAAGAGGTCGGCGCCGAG
ACCGCCGAGGGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1224:87..451+

>mRNA_L-elsbetiae_contig1224.1857.1 ID=mRNA_L-elsbetiae_contig1224.1857.1|Name=mRNA_L-elsbetiae_contig1224.1857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig1224:87..451+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGCCAACACCACCGCCATCGCCGAGATGGTGGCCAACACCACCGC
CATCGCCGAGGCCCTGTCTCGCATCGACCACAAGTTCGACCTCATGTACG
CCAAGCGTGCCTTCGTGCACTGGTACGTGGGTGAGGGCATGGAGGAAGGC
GAGTTCTCCGAGGCTCGCGAGGACCTCGCGGCCCTCGAGAAGGACTACGA
AGAGGTCGGCGCCGAGACCGCCGAGGGCGAGGCCCTGTCTCGCATCGACC
ACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGGTACGTG
GGTGAGGGCATGGAGGAAGGCGAGTTCTCCGAGGCTCGCGAGGACCTCGC
GGCCCTCGAGAAGGACTACGAAGAGGTCGGCGCCGAGACCGCCGAGGGCG
AG
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