mRNA_L-elsbetiae_contig12234.1855.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12234.1855.1
Unique NamemRNA_L-elsbetiae_contig12234.1855.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12234.1855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12234contigL-elsbetiae_contig12234:794..1567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12234.1855.1prot_L-elsbetiae_contig12234.1855.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12234 883..1567 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.8276072-UTR-L-elsbetiae_contig12234:793..8821622815422.8276072-UTR-L-elsbetiae_contig12234:793..882Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12234 794..882 +
1691682890.480799-UTR-L-elsbetiae_contig12234:793..8821691682890.480799-UTR-L-elsbetiae_contig12234:793..882Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12234 794..882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.84513-CDS-L-elsbetiae_contig12234:882..9351622815422.84513-CDS-L-elsbetiae_contig12234:882..935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12234 883..935 +
1691682890.4928567-CDS-L-elsbetiae_contig12234:882..9351691682890.4928567-CDS-L-elsbetiae_contig12234:882..935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12234 883..935 +
1622815422.8567588-CDS-L-elsbetiae_contig12234:1431..15671622815422.8567588-CDS-L-elsbetiae_contig12234:1431..1567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12234 1432..1567 +
1691682890.50591-CDS-L-elsbetiae_contig12234:1431..15671691682890.50591-CDS-L-elsbetiae_contig12234:1431..1567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12234 1432..1567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12234.1855.1

>prot_L-elsbetiae_contig12234.1855.1 ID=prot_L-elsbetiae_contig12234.1855.1|Name=mRNA_L-elsbetiae_contig12234.1855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
MSAFCATAQTLWGKRKQRRRRRHSDSHQCGPVGWCGVVDGMASVDVLGVH
GGRIGSQNRFASF
back to top

mRNA from alignment at L-elsbetiae_contig12234:794..1567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12234.1855.1 ID=mRNA_L-elsbetiae_contig12234.1855.1|Name=mRNA_L-elsbetiae_contig12234.1855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig12234:794..1567+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGAGACTAACCAACATCAACATTCAGACAGCACCATGAATCCCTCGAC
CATATCTACTGTACAGCCCCTCTGCCAACTGCCCCTCACATGTCAGCGTT
CTGCGCAACTGCCCAAACTTTGTGGGGTAAGCGGAAACAGAGGTGAGGCG
ACTGAGCTGGGGTCTAGTCTACATAGTTCCCATGCCCGTGATACATACAC
TACCATGTATACTCGTGCCCTCTACTGACGTGTCCATAAACTCTCACCGG
AACTACCCCCATTGGGGGTGCCTTCGGGTGTGCCTGATGCAAGATGGATG
GTACTTAGCGCGATCACGGTCCAAACCGCGGTCCCTGACAGCAGGAACAT
GCGTGCGGCGCGATTACAGCAATGCACGCATGCACGGGAACAGCAGGCCT
CACCCCCGCGGAAGTCAAACTCGCTTGAACAGCGGTGATGGAGACGGAGA
TCGACACCAAGAGGCAGAGACAGAAACTGAGATAGAGGAGAGTAGTTTGG
AAAAGTTGCCACCCCAGCCAAAATCGTGAGAAAGATCAAGATAGATGCCT
TCACGCGCTCGTGCACGCCGCTTGGCATTTTCTAAGGGGCACATCCGAAA
CATCCCCGTTCATCCGTTTTCAATCTGCTGTACAATAGGCGAAGGCGGCG
CCACTCCGACTCTCACCAGTGCGGGCCAGTGGGTTGGTGTGGAGTGGTAG
ATGGCATGGCTTCTGTAGATGTATTGGGCGTTCACGGCGGGAGGATCGGG
AGCCAAAATCGATTTGCGTCGTTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12234:794..1567+

>mRNA_L-elsbetiae_contig12234.1855.1 ID=mRNA_L-elsbetiae_contig12234.1855.1|Name=mRNA_L-elsbetiae_contig12234.1855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig12234:794..1567+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGCGTTCTGCGCAACTGCCCAAACTTTGTGGGGTAAGCGGAAACA
GAGATGTCAGCGTTCTGCGCAACTGCCCAAACTTTGTGGGGTAAGCGGAA
ACAGAGGCGAAGGCGGCGCCACTCCGACTCTCACCAGTGCGGGCCAGTGG
GTTGGTGTGGAGTGGTAGATGGCATGGCTTCTGTAGATGTATTGGGCGTT
CACGGCGGGAGGATCGGGAGCCAAAATCGATTTGCGTCGTTCGCGAAGGC
GGCGCCACTCCGACTCTCACCAGTGCGGGCCAGTGGGTTGGTGTGGAGTG
GTAGATGGCATGGCTTCTGTAGATGTATTGGGCGTTCACGGCGGGAGGAT
CGGGAGCCAAAATCGATTTGCGTCGTTC
back to top