mRNA_L-elsbetiae_contig12230.1853.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12230.1853.1
Unique NamemRNA_L-elsbetiae_contig12230.1853.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 9.420e-37
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = -1 
Query:    1 PFGLEPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHHYS 294
            P G +P+DV+A+P++YKDV  SKY+  W+ AM+KE+DGH  TGTF    E+P+GR+AI SKWVFSWK +E+GLI D KAR+VARGFSQIP +DFHH S
Sbjct:  110 PIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLS 207
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BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 5.910e-36
Identity = 61/98 (62.24%), Postives = 78/98 (79.59%), Query Frame = -1 
Query:    1 PFGLEPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHHYS 294
            P G +P+DV+A+P++YKDV  SKY+  W+ AM+KE+DGH  TGTF    E+P+GR+AI SKWVFSWK  E+GLI D KAR+VARGFS+IP +DFHH S
Sbjct:    4 PIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSS 101
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BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 6.880e-36
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = -1 
Query:    1 PFGLEPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHHYS 294
            P G +P+DV+A+P++YKDV  SKY+  W+ AM+KE+DGH  TGTF    E+P+GR+AI SKWVFSWK +E+GLI D KAR+VARGFSQIP +DFHH S
Sbjct:   96 PIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSS 193
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BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5KFR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR2_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.870e-35
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = -1 
Query:    1 GSRPTCSSPQS*VPAHPFGLEPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHHYS 342
            GS      PQ  VP+ PFG +P+DV+ +P++YKDV  SKY+ LW+ A+ KE DGHK TGTF++   +P+GR+AIS+KW+FS K +E+GLI D KAR+VARGFSQIP VDFHH S
Sbjct:  250 GSSQPLHVPQLSVPS-PFGQKPSDVECVPLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSS 362
[Close]
BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5JR97_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR97_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.550e-34
Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = -1 
Query:    1 GGVGSRPTCSSPQS*VPAHPFGLEPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHHYS 351
            G  GS      PQ  +P+ PFG +P+DV+ +P++YKDV  SKY+ LW+ A+ KE DGHK TGTF++   +P+GR+AIS+KW+FS K +E+GLI D KAR+VARGF+QIP VDFHH S
Sbjct:  196 GDDGSSQPLHDPQLSIPS-PFGQKPSDVECVPLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFTQIPGVDFHHSS 311
[Close]
BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5KF65_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF65_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.780e-34
Identity = 67/117 (57.26%), Postives = 89/117 (76.07%), Query Frame = -1 
Query:    1 GGVGSRPTCSSPQS*VPAHPFGLEPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHHYS 351
            G  GS  T   PQ  +P+ PFG +P+DV+ +P++YKDV  SKY+ LW+ A+ KE DGHK TGTF++   +P+GR+AIS+KW+FS K +E+GLI D KAR+VARGFSQ+P VDFHH S
Sbjct:  206 GDDGSSQTLHDPQLSIPS-PFGQKPSDVEWVPLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQVPGVDFHHSS 321
[Close]
BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5JVF9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF9_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.800e-34
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = -1 
Query:    7 PFGLEPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHH 294
            P G +P+DV+A+P++YKDV RSKY+  W+  M+K++DGH  TGTF +  E+PDGR+AI SKWVFSW+ +E+GLI D K R+V RGF QIP +DFHH
Sbjct:   90 PIGQKPSDVEAVPMTYKDVTRSKYKVFWEATMKKDIDGHDKTGTFTNVKELPDGRKAIGSKWVFSWRTNEKGLIVDFKVRMVPRGFPQIPGIDFHH 185
[Close]
BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 4.850e-34
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = -1 
Query:    1 PFGLEPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHHYS 294
            P G +P+DVKA+P++YKDV  SKY+  W+ AM+KE+DGH  TGTF    E+P+GR+AI SKWVFSWK +E+GLI D KAR+VARGFSQIP +DFHH S
Sbjct:  636 PIGQKPSDVKAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSS 733
[Close]
BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5KEA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.860e-34
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = -1 
Query:    1 EPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHHYS 282
            +P+DV+ALP +YKDV  SKY+  W+ AM+KE+DGH  TGTF    E+P+GR+AI SKWVFSWK +E+GLI D KAR+VARGFSQIP +DFHH S
Sbjct:   65 KPSDVEALPTTYKDVRCSKYKVFWEAAMRKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSS 158
[Close]
BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.920e-34
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = -1 
Query:    1 GGVGSRPTCSSPQS*VPAHPFGLEPTDVKALPVSYKDVERSKYRDLWDRAMQKEMDGHKTTGTFADEDEVPDGRQAISSKWVFSWKVSEQGLITDLKARLVARGFSQIPNVDFHHYS 351
            G  GS      PQ  +P+ PFG +P+DV+ +P++YKDV  SKY+ LW+ A+ KE DGHK TGTF++   +P+GR+AIS+KW+FS K +E+GLI D KAR+VARGFSQIP VDFHH S
Sbjct:   87 GDDGSSQPLHDPQLSIPS-PFGQKPSDVECVPLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSS 202
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12230.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K282_9PHAE9.420e-3763.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE5.910e-3662.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE6.880e-3663.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFR2_9PHAE5.870e-3558.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR97_9PHAE1.550e-3456.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF65_9PHAE1.780e-3457.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVF9_9PHAE2.800e-3459.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE4.850e-3464.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEA7_9PHAE4.860e-3464.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE4.920e-3457.26Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12230contigL-elsbetiae_contig12230:1038..1877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size840
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12230.1853.1prot_L-elsbetiae_contig12230.1853.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12230 1328..1777 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.711059-UTR-L-elsbetiae_contig12230:1037..13271622815422.711059-UTR-L-elsbetiae_contig12230:1037..1327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12230 1038..1327 +
1691682890.4196842-UTR-L-elsbetiae_contig12230:1037..13271691682890.4196842-UTR-L-elsbetiae_contig12230:1037..1327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12230 1038..1327 +
1622815422.7304878-UTR-L-elsbetiae_contig12230:1777..18771622815422.7304878-UTR-L-elsbetiae_contig12230:1777..1877Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12230 1778..1877 +
1691682890.436234-UTR-L-elsbetiae_contig12230:1777..18771691682890.436234-UTR-L-elsbetiae_contig12230:1777..1877Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12230 1778..1877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.7210648-CDS-L-elsbetiae_contig12230:1327..17771622815422.7210648-CDS-L-elsbetiae_contig12230:1327..1777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12230 1328..1777 +
1691682890.4280636-CDS-L-elsbetiae_contig12230:1327..17771691682890.4280636-CDS-L-elsbetiae_contig12230:1327..1777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12230 1328..1777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12230.1853.1

>prot_L-elsbetiae_contig12230.1853.1 ID=prot_L-elsbetiae_contig12230.1853.1|Name=mRNA_L-elsbetiae_contig12230.1853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
MGEPGLSSGVRSTSVLILRRQASASASTSARTAWSACSSARRSSTSELRT
YSATISAPLSCSATCRSPLRVPPLCLAAKPLVVAPSCWVPPDSSLLRDDS
TSSTTPVSLLNWSESEVTSLRRDAASRTSSPPRELPVVLSLSLILQWTP*
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mRNA from alignment at L-elsbetiae_contig12230:1038..1877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12230.1853.1 ID=mRNA_L-elsbetiae_contig12230.1853.1|Name=mRNA_L-elsbetiae_contig12230.1853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig12230:1038..1877+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGTAGTGGTGAAAATCCACGTTGGGAATTTGAGAGAAACCACGCGCAA
CCAAACGGGCCTTGAGATCCGTAATGAGCCCCTGCTCGCTAACCTTCCAC
GAGAACACCCATTTCGAACTGATAGCTTGGCGCCCGTCGGGTACTTCGTC
CTCATCTGCGAAAGTTCCCGTCGTCTTATGCCCGTCCATCTCTTTTTGCA
TGGCCCTGTCCCACAAGTCTCTGTACTTGGACCTTTCTACATCTTTGTAC
GACACCGGGAGAGCCTTTACATCAGTTGGTTCGAGCCCAAATGGGTGAGC
CGGGACTTAGCTCTGGGGTGAGGAGCACGTCGGTCTTGATCCTACGCCGC
CAGGCTTCTGCGTCGGCTTCCACTTCAGCGCGTACAGCTTGGAGCGCTTG
CTCTTCCGCCAGACGGTCCTCCACCAGCGAGTTGCGGACATATTCCGCGA
CTATCTCCGCTCCGCTTTCCTGCTCCGCGACCTGCCGGTCTCCGCTCCGA
GTGCCGCCGCTATGCCTTGCCGCGAAACCTCTAGTAGTAGCACCCTCTTG
CTGGGTACCACCTGACTCCTCGCTGCTCCGTGATGACAGCACTTCCTCAA
CCACGCCAGTTAGCCTTCTTAACTGGTCTGAGAGTGAGGTCACATCTCTG
CGAAGAGATGCGGCTTCGAGAACATCCTCGCCTCCGCGGGAACTGCCCGT
GGTGCTGTCGTTGTCTCTCATTCTCCAATGGACTCCCTAGAGGGATGGAA
CACACTAGTGTGTTTAGTATGTCCTTTACTTGAGAAGGAGAGATTGGTTT
ATCACTTGTATTAGGAACGCAGTGCTCCACAGAGAGCACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12230:1038..1877+

>mRNA_L-elsbetiae_contig12230.1853.1 ID=mRNA_L-elsbetiae_contig12230.1853.1|Name=mRNA_L-elsbetiae_contig12230.1853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig12230:1038..1877+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGAGCCGGGACTTAGCTCTGGGGTGAGGAGCACGTCGGTCTTGAT
CCTACGCCGCCAGGCTTCTGCGTCGGCTTCCACTTCAGCGCGTACAGCTT
GGAGCGCTTGCTCTTCCGCCAGACGGTCCTCCACCAGCGAGTTGCGGACA
TATTCCGCGACTATCTCCGCTCCGCTTTCCTGCTCCGCGACCTGCCGGTC
TCCGCTCCGAGTGCCGCCGCTATGCCTTGCCGCGAAACCTCTAGTAGTAG
CACCCTCTTGCTGGGTACCACCTGACTCCTCGCTGCTCCGTGATGACAGC
ACTTCCTCAACCACGCCAGTTAGCCTTCTTAACTGGTCTGAGAGTGAGGT
CACATCTCTGCGAAGAGATGCGGCTTCGAGAACATCCTCGCCTCCGCGGG
AACTGCCCGTGGTGCTGTCGTTGTCTCTCATTCTCCAATGGACTCCCTAG
ATGGGTGAGCCGGGACTTAGCTCTGGGGTGAGGAGCACGTCGGTCTTGAT
CCTACGCCGCCAGGCTTCTGCGTCGGCTTCCACTTCAGCGCGTACAGCTT
GGAGCGCTTGCTCTTCCGCCAGACGGTCCTCCACCAGCGAGTTGCGGACA
TATTCCGCGACTATCTCCGCTCCGCTTTCCTGCTCCGCGACCTGCCGGTC
TCCGCTCCGAGTGCCGCCGCTATGCCTTGCCGCGAAACCTCTAGTAGTAG
CACCCTCTTGCTGGGTACCACCTGACTCCTCGCTGCTCCGTGATGACAGC
ACTTCCTCAACCACGCCAGTTAGCCTTCTTAACTGGTCTGAGAGTGAGGT
CACATCTCTGCGAAGAGATGCGGCTTCGAGAACATCCTCGCCTCCGCGGG
AACTGCCCGTGGTGCTGTCGTTGTCTCTCATTCTCCAATGGACTCCCTAG
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