mRNA_L-elsbetiae_contig1223.1852.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1223.1852.1
Unique NamemRNA_L-elsbetiae_contig1223.1852.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1223.1852.1 vs. uniprot
Match: D7FTB1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB1_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 7.250e-63
Identity = 104/153 (67.97%), Postives = 116/153 (75.82%), Query Frame = 1 
Query:    1 MLSLASSEASTILSSAGGDHRGFNPGPLLVAGQDNPRRPKQSDHDERQLLRLSGFKEEDVELMKVMFDMYDRDRDGMITVEEACLLCTTLGYHPAESSSIRCGEDGRVTFRQLVQSAGFVRGNHVPPAASGGHTKHFFRMANRSNSAPMTAAQ 459
            M S ASSE+STI+SSAGGD R F PGPLLVAG+ NPRRPK +DH+ RQLLRL+GFKEEDVELMKV+FDMYDRDRDGM+TVEEACLLCT                       Q +QSAGFVRG+HVPP A GGHTKHFFRMANRS+S PM + Q
Sbjct:    1 MFSFASSESSTIVSSAGGDFRAFKPGPLLVAGEANPRRPKSTDHEHRQLLRLTGFKEEDVELMKVLFDMYDRDRDGMLTVEEACLLCT-----------------------QFIQSAGFVRGSHVPPTARGGHTKHFFRMANRSSSTPMGSKQ 130
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BLAST of mRNA_L-elsbetiae_contig1223.1852.1 vs. uniprot
Match: A0A7S0DQY7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DQY7_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 3.850e-5
Identity = 38/158 (24.05%), Postives = 77/158 (48.73%), Query Frame = 1 
Query:  112 RPKQSDHDERQLLRLSGFKEEDVELMKVMFDMYDRDRDGMITVEEACLLCTTLGYHPAES------SSIRCGEDGRVTFRQLVQSAGFVRGNHVPPAASGGHTKHFFRMANRSNSAPMTAAQMHGLFRSIGVDVPLPAVERI--STTISGDGETQFTE 561
            +P+      R++L+ +GF E+D+E +K  F ++D+++DG I+V E   +  T+G  P+ES      +  +   DG + F++ V+       N    A S         M +  N   ++ A++  +  S+G ++    ++ +     I+GDG+  + E
Sbjct:   12 KPEDEGKAHREVLKENGFTEDDLEDLKAAFRLFDKNKDGHISVIELKEVFRTIGIEPSESEFKSMMADAKANSDGDIDFKEFVRMVMTQMEN----AGS---------MQSLDNEDFISVAELKHVMESLGEELSESDLQEMIEEADINGDGKLNYKE 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1223.1852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTB1_ECTSI7.250e-6367.97EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S0DQY7_9EUKA3.850e-524.05Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1223contigL-elsbetiae_contig1223:23358..26532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-13_003940.1
Exons6
Model size663
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1223.1852.1prot_L-elsbetiae_contig1223.1852.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1223 23358..26532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.6053345-CDS-L-elsbetiae_contig1223:23357..234841622815422.6053345-CDS-L-elsbetiae_contig1223:23357..23484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 23358..23484 -
1691682890.349851-CDS-L-elsbetiae_contig1223:23357..234841691682890.349851-CDS-L-elsbetiae_contig1223:23357..23484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 23358..23484 -
1622815422.6197097-CDS-L-elsbetiae_contig1223:23799..238761622815422.6197097-CDS-L-elsbetiae_contig1223:23799..23876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 23800..23876 -
1691682890.3635561-CDS-L-elsbetiae_contig1223:23799..238761691682890.3635561-CDS-L-elsbetiae_contig1223:23799..23876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 23800..23876 -
1622815422.6323948-CDS-L-elsbetiae_contig1223:24342..244691622815422.6323948-CDS-L-elsbetiae_contig1223:24342..24469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 24343..24469 -
1691682890.372613-CDS-L-elsbetiae_contig1223:24342..244691691682890.372613-CDS-L-elsbetiae_contig1223:24342..24469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 24343..24469 -
1622815422.6461473-CDS-L-elsbetiae_contig1223:24808..248771622815422.6461473-CDS-L-elsbetiae_contig1223:24808..24877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 24809..24877 -
1691682890.3849-CDS-L-elsbetiae_contig1223:24808..248771691682890.3849-CDS-L-elsbetiae_contig1223:24808..24877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 24809..24877 -
1622815422.657481-CDS-L-elsbetiae_contig1223:25524..256191622815422.657481-CDS-L-elsbetiae_contig1223:25524..25619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 25525..25619 -
1691682890.3957374-CDS-L-elsbetiae_contig1223:25524..256191691682890.3957374-CDS-L-elsbetiae_contig1223:25524..25619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 25525..25619 -
1622815422.675737-CDS-L-elsbetiae_contig1223:26364..265321622815422.675737-CDS-L-elsbetiae_contig1223:26364..26532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 26365..26532 -
1691682890.4107018-CDS-L-elsbetiae_contig1223:26364..265321691682890.4107018-CDS-L-elsbetiae_contig1223:26364..26532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1223 26365..26532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1223.1852.1

>prot_L-elsbetiae_contig1223.1852.1 ID=prot_L-elsbetiae_contig1223.1852.1|Name=mRNA_L-elsbetiae_contig1223.1852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
MLSLASSEASTILSSAGGDHRGFNPGPLLVAGQDNPRRPKQSDHDERQLL
RLSGFKEEDVELMKVMFDMYDRDRDGMITVEEACLLCTTLGYHPAESSSI
RCGEDGRVTFRQLVQSAGFVRGNHVPPAASGGHTKHFFRMANRSNSAPMT
AAQMHGLFRSIGVDVPLPAVERISTTISGDGETQFTEEELVDHVACAQRR
QDALSQKGSGSRAPTPRKHK*
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mRNA from alignment at L-elsbetiae_contig1223:23358..26532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1223.1852.1 ID=mRNA_L-elsbetiae_contig1223.1852.1|Name=mRNA_L-elsbetiae_contig1223.1852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3175bp|location=Sequence derived from alignment at L-elsbetiae_contig1223:23358..26532- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTCGCTTGCCAGCTCGGAGGCGTCCACTATCCTCTCAAGTGCTGG
TGGCGACCATCGCGGCTTCAACCCCGGGCCGCTCCTTGTCGCAGGCCAGG
ACAATCCCCGCCGCCCAAAACAATCTGATCACGATGAACGTCAGCTCTTG
CGCTTGAGTGGGTTCAAGGTAGGCTCACGTGTCTGCGGTAGCCCCGCAGC
GTAAAGGCATCGCGTCGCGAGGGGAGGTTACCCTACGAGCCCATCTAGAC
AGCGAGCCTCACACTCGAGAAGTGGGAGAAGGATTATTCCCATGACGACT
CCACGTAAAGCGTCAGCTCTCATAAGCATGCTCGGCGCGGTACCTTCCAG
TGAATTTTGACAGCGCCCCATCTTGCATGCGCTCGTCTTGACAAATCGAT
GTATGTATGTGGTACATTCTCCGGCATTCTACGTCGACAAGAACATGACC
TAGACTACATAAACCTCCCGGCGAGGTGTAGCTGCAGCTCCTGCTCGTTG
GGTAAATGTAGATTTGTCTCGAGTCTGCGGATGAAAACATGGAACACGAA
CTATCGTATGTATCTATCTGTACTTTACAGCAGGAAAACAGATAAATGCT
GATCACACATAAACAACTCGGGGAAAGTACAACTTACCAACGAGTGACAG
GGAAACAGTTCAGTAACAGACCCTGGTTCTTGTTGACATTGAAGCTGTTT
GGTGTTGTCTGCCCCGACCCCCATCCATCTGTTGGAACGACAAAATATCG
ACCGCTCGTTGGTGTGTCGGGTGATGTCGATTGCAAAACCCCGTAAAAGT
ACAAGATGCTTTTTGTGCGATAATTTTACTTTTCAGCAGAAGATACATGA
CGAGCTGTTTGCTGGCTAAATACAATACATAAAATATATCTAGACTTTTT
CACATTTTTCCAGGAGGAAGATGTCGAGCTGATGAAAGTGATGTTCGACA
TGTACGACCGGGATAGAGACGGGATGATAACTGTTGAAGAGGCCTGCCTT
CTGTGCACGTAAGAAGACTACAGCAGGCTGCTGCGTCTATTGGCGCCGTG
CACAAGGTTCTGTACGCATTGCTGTTGCTTTCGCTTCAAACTGTAGTCTA
AACAACTTTCTTGGCATCTGCGCCTCTTCTAAGGAGAGTGTGTATTGGAG
AGTGCAATCACCAGTCGGGCGCAATTACACCAAGATACCAAGATACCAGA
ATTGGATTATTCCTCGTTTTAGGTAATCTGCGGCAGATACCAGTCTACAA
TAGGCTTAATTTGTACCGTACGGAATATGGGCAACTCATGTCTGTCAATG
AGTGCACATTCCGCTCAGCATCTGAAAAAACGAAATCCTTCTTATTGTGG
ATCAATAACTCTGTATTGGAAATAACGGAGTTCAATCAGATTATCCCGGG
TTTGACACCTGAAATATTTATGTTGTCATCGATTGCACTTTAGAAATACA
GTGCACAAATGCTGTGTACAATCGCTGCTGTCACCAGGGCACTCGCTACA
TAGCAGGCTGCCCCACCCCCAAACAAACCCGGCTAAAGCACTAGAAGTGT
GCCCACAGCCACCCGTGTGTATGCCACATCGAGTTACTTCGATCACGAAT
CCATTGCTTTCCCTGTTTCTGACGTCCAGCATACCCACACATGTCTATTG
TTAAGGACGCTTGGGTATCACCCGGCGGAGAGTTCTTCGATACGCTGCGG
CGAGGACGGTCGAGTTACTTTCAGGTCAGCACCGGAACAGCGCATAGCCT
TCACTACCCGGCGAAACGTGCGGCGTTTCCGTTTGGAGTGGCACACTCTA
GACTTTTGAGCGGGCGGCTGGGCACTGAGCACTCTCAAGCGGACTGTCCC
GACCTATTTCGCTCATTGCTCAAGTCTTTCTCGATGGTAAAAAACGGTGG
CTGGCGACCTGCAAGTAAACAAACGGGGACGGGAAAATGAATCTCTTTTG
GCCACGTTCGACCACCATTATTGCAAACGTCGTGGCGTTCTTTGAGACGC
TTAGAGATCCCACATAATTGAAGGGTTGTGTGACGCAAGAAAAACCTTCT
GCAATTTTCACAGGCAGCTGGTGCAGTCGGCGGGCTTTGTGAGGGGTAAC
CACGTGCCGCCAGCAGCCTCCGGGGGGCACACCAAGCACTTCTTCAGGAT
GGCGAACAGAAGCAATTCCGCACCAATGACCGCGGCGCAGGTATTGCGAT
TCTAGTGGGAGGGCAGCTCAAACTGTTTTGTTTTTCTATCGTGATCAAGG
TCGATCTGGCCACGAGTTATGAATACGTGATGTTCAGCAAGCTTATTGAA
CAGTCTGGCCAAACTATTTTCATCGTGATGGGACAACTTGGATGGGACTG
CGTTTCTCTCCGTAGGACACACGATTGCGCAGCGCGAACGAGACATAACG
ATTTAGGGATCGCCCTATTGAGCTAGCCTGTCGTCCTCGGGACAGAAGGA
GCGCATGGCACTCGCCGACGATTGCATTTGTGCAAAACGAAAAGGCATCA
ATTTTGGCATACACACGGGGCAAGCGTAAAACCTTCTTTGGCAGCACGCA
GTCTCCCATCGTGGGCGGGAGCGCCACGAACACGTCTACTACTTGTCCCT
AACTCAACCGCGTGCGGGTCTTCTCTGCTTGGTGGCGCTCGTAATGGCCA
CTTCAGATGCACGGCCTTTTCCGGTCGATCGGGGTGGACGTTCCTTTGCC
TGCAGTCGAGCGAATATCAACAACTATCAGCGGGTAAGCTGTCTTGGAGG
CATATTTGCCGCCCAGTTAGTTGTATGCTCACGACAAGCACTCCAAAAAG
TTCAAGAAAAAATATGAGAAACCCGAAGCACGAGAAGAAAAATCGTGAAT
TAAGAGACACGGTTCGGAGTACATTGGTGCGGATCAAGCTACGAGTACTT
CTTAAGAGCCCCTTGCCCGCATGGCTTCGTACGTACGTACCATAGACGTT
GCTATAGTGGAACCGCTTTAGGAAGAGAGCCATGAAGCGCTGCGGTTGCA
TCGATAACGAAACGGTTACTACCCGTTTTTCTGTCATTGTTTGGGCAGCG
ATGGAGAGACGCAGTTTACGGAAGAGGAGCTGGTGGATCATGTGGCCTGC
GCCCAGCGCCGGCAGGATGCCTTGTCTCAAAAGGGATCGGGTTCTAGGGC
TCCCACCCCTCGAAAACATAAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1223:23358..26532-

>mRNA_L-elsbetiae_contig1223.1852.1 ID=mRNA_L-elsbetiae_contig1223.1852.1|Name=mRNA_L-elsbetiae_contig1223.1852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig1223:23358..26532- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTCGCTTGCCAGCTCGGAGGCGTCCACTATCCTCTCAAGTGCTGG
TGGCGACCATCGCGGCTTCAACCCCGGGCCGCTCCTTGTCGCAGGCCAGG
ACAATCCCCGCCGCCCAAAACAATCTGATCACGATGAACGTCAGCTCTTG
CGCTTGAGTGGGTTCAAGATGCTCTCGCTTGCCAGCTCGGAGGCGTCCAC
TATCCTCTCAAGTGCTGGTGGCGACCATCGCGGCTTCAACCCCGGGCCGC
TCCTTGTCGCAGGCCAGGACAATCCCCGCCGCCCAAAACAATCTGATCAC
GATGAACGTCAGCTCTTGCGCTTGAGTGGGTTCAAGGAGGAAGATGTCGA
GCTGATGAAAGTGATGTTCGACATGTACGACCGGGATAGAGACGGGATGA
TAACTGTTGAAGAGGCCTGCCTTCTGTGCACGAGGAAGATGTCGAGCTGA
TGAAAGTGATGTTCGACATGTACGACCGGGATAGAGACGGGATGATAACT
GTTGAAGAGGCCTGCCTTCTGTGCACGACGCTTGGGTATCACCCGGCGGA
GAGTTCTTCGATACGCTGCGGCGAGGACGGTCGAGTTACTTTCAGGACGC
TTGGGTATCACCCGGCGGAGAGTTCTTCGATACGCTGCGGCGAGGACGGT
CGAGTTACTTTCAGGCAGCTGGTGCAGTCGGCGGGCTTTGTGAGGGGTAA
CCACGTGCCGCCAGCAGCCTCCGGGGGGCACACCAAGCACTTCTTCAGGA
TGGCGAACAGAAGCAATTCCGCACCAATGACCGCGGCGCAGGCAGCTGGT
GCAGTCGGCGGGCTTTGTGAGGGGTAACCACGTGCCGCCAGCAGCCTCCG
GGGGGCACACCAAGCACTTCTTCAGGATGGCGAACAGAAGCAATTCCGCA
CCAATGACCGCGGCGCAGATGCACGGCCTTTTCCGGTCGATCGGGGTGGA
CGTTCCTTTGCCTGCAGTCGAGCGAATATCAACAACTATCAGCGGATGCA
CGGCCTTTTCCGGTCGATCGGGGTGGACGTTCCTTTGCCTGCAGTCGAGC
GAATATCAACAACTATCAGCGGCGATGGAGAGACGCAGTTTACGGAAGAG
GAGCTGGTGGATCATGTGGCCTGCGCCCAGCGCCGGCAGGATGCCTTGTC
TCAAAAGGGATCGGGTTCTAGGGCTCCCACCCCTCGAAAACATAAATAGC
GATGGAGAGACGCAGTTTACGGAAGAGGAGCTGGTGGATCATGTGGCCTG
CGCCCAGCGCCGGCAGGATGCCTTGTCTCAAAAGGGATCGGGTTCTAGGG
CTCCCACCCCTCGAAAACATAAATAG
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