mRNA_L-elsbetiae_contig12217.1846.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12217.1846.1
Unique NamemRNA_L-elsbetiae_contig12217.1846.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.090e-35
Identity = 82/153 (53.59%), Postives = 95/153 (62.09%), Query Frame = 3
Query:    3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWM-KSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASALRSM-GDVVSNVKRFHLDDEFNGDV-RGAAWPRELKVLTFGESFN 452
            GP+RCLDALIIALN              Q S   WYTST QLQLASLE+CA+CRS   L + V+ GTPTRLW   +  RETRS KR ++TRVPVVR   VTW LP  ALR+M GD  S V  F L   F+ D+ RG  WP +L +L  G  FN
Sbjct:    8 GPSRCLDALIIALN--------------QASGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLGPGFN 146          
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.830e-32
Identity = 80/153 (52.29%), Postives = 92/153 (60.13%), Query Frame = 3
Query:    3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWM-KSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASALRSM-GDVVSNVKRFHLDDEFNGDV-RGAAWPRELKVLTFGESFN 452
            GP+RCLDALIIALN              Q S   WYTST QLQL SLE+CAACRS   L + V+ GTP RLW   +  RETRS KR ++TRVPVVR   VTW LP  ALR+M GD  S V  F L   F+ D+ RG  WP +L +   G  FN
Sbjct:   39 GPSRCLDALIIALN--------------QASGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLFGVGPGFN 177          
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 9.530e-23
Identity = 69/153 (45.10%), Postives = 81/153 (52.94%), Query Frame = 3
Query:    3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEG-TPTRLWMKSPIRETRS-TKRPSLTRVPVVRPFAVTWNLPASALRSMGDVVSNVKRFHL-DDEFNGDVRGAAWPRELKVLTFGESFN 452
            GP RCL+A  +ALN        TS D        WYTSTK+LQLASL+ C  CR  P+LH+ V     P RLW      E R+  KRPS T VPV RP  VTW  PA  L  +  V + V+RF +  D    DV    WP  LK L FGE F+
Sbjct:    3 GPGRCLEAFAVALN--------TSCD-----GNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVERFLVRQDTVVDDV---VWPCRLKKLFFGEGFD 139          
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.320e-19
Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = 3
Query:    3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWM----KSPIRETR--STKRPSLTRVPVVRPFAVTWNLPASALRSMGDVVSNVKRFHLDDEFNGDVRGAAWPRELKVLTFGESFN 452
            GP+RCLDA  +ALN   +                WY ST+QLQL+SL  C ACRS PT+H+KV+  TP RL+      + +R+    S+KR    RVP +R   VTW L     R  G  +S+V+ F L D  N  +  A W   ++ L+ G+ F+
Sbjct:   26 GPSRCLDAFKVALNQACD-------------GGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSLGQMFD 168          
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.730e-19
Identity = 60/163 (36.81%), Postives = 81/163 (49.69%), Query Frame = 3
Query:    3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSL---TRVPVVRPFAVTWNLPASAL--RSMGDVVSNVKRFHLDDEFNG-DVRGAAWPRELKVLTFGESFNNRSRKWP 473
            G ++CLDA ++ALN   +              KRWY ST +LQL SLEVC ACR   TLHV+V+  TP  LW  S    T + + P +   +RVPVV+ F +TW LP   L  RS  +V S       +   +   +  A WP+ LK + F       +  WP
Sbjct:    5 GNSKCLDAFVVALNQACDG-----------QEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWP 156          
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.900e-17
Identity = 59/148 (39.86%), Postives = 80/148 (54.05%), Query Frame = 3
Query:    3 GPNR--CLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASA-LRSMGDVVSNVKRFHLDDEFNGDVRGAAWPRELKVLTF 437
            GP R  CL+ALI+ALN        T D       K WYTSTK+LQLASL+ C ACR+  T+H+ V+E  P RL + S        KR   TRVP +R   VTWN+P +A LR+    +++++     D F   +    WP  L+ + F
Sbjct:   45 GPTRKFCLEALIVALN-------ETCDG------KSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRL-LASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEF 178          
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.310e-16
Identity = 61/162 (37.65%), Postives = 82/162 (50.62%), Query Frame = 3
Query:    9 NRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASALRSMGD---VVSNVKRFHLDDEFNGDVRGAAWPRELKVLTF--GESFNNRSR--KWP 473
            N CL +LI+ALN        T D T       WYTSTK+LQ ASLE C ACR+ P +H+KV+   P  L   +        KR   TRVP +R  +VTWN+ A+A   +G+    +++V        F+G +    WPR LK++ F     FN      KWP
Sbjct:   12 NPCLSSLIVALN-------ETCDGTS------WYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHP-KRLCWTRVPRLRARSVTWNMRAAA--ELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWP 157          
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.610e-16
Identity = 60/162 (37.04%), Postives = 72/162 (44.44%), Query Frame = 3
Query:    3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSL---TRVPVVRPFAVTWNLPASAL--RSMGDVVSNVKRFHLDDE-FNGDVRGAAWPRELKVLTFGESFNNRSRKW 470
            G    LD LI+ALN   +              KRWY ST +LQL SLE+C ACRSA  LHV V E TP  LW     R T S + P +    RVP V+    TW LP   L  R+  +     +R   D   F   V    WP  LK L F      ++  W
Sbjct:   85 GGGSSLDTLIVALNQACDG-----------QEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVFSRRMPGKAVWW 235          
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.710e-16
Identity = 61/151 (40.40%), Postives = 76/151 (50.33%), Query Frame = 3
Query:    3 GPNR--CLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSLTRVPVVRPFAVTWNLP-ASALRSMGDVVSNVKRFHLDDEFNGDVRGAAWPRELKVLTFGES 446
            GP R  CL  L +ALN        T D       K WYTSTK+LQLASLE+C ACR   TLH+ V+  TP RL   +        KR   TRVP +R    TWN+P AS +R+      +V        F+G +    WPR LK + F +S
Sbjct:  130 GPTRSSCLKTLTVALN-------ETCDG------KSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHP-KRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQS 266          
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.960e-16
Identity = 50/124 (40.32%), Postives = 68/124 (54.84%), Query Frame = 3
Query:   99 KRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIR---ETRSTKRPSLTRVPVVRPFAVTWNLPASAL--RSMGDVVSNVKRFHLDDEFNGDVRGAA-WPRELKVLTFGESFN 452
            KRWYTST +LQL SL++C ACRS PTLHV+V  GTPT LW    ++    T+S+K   ++RVPVVR   +TW      L  R+  ++ S  +R  +         G+  WP  L  L     F+
Sbjct:   26 KRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTDFH 149          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT95_ECTSI4.090e-3553.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA08_9PHAE4.830e-3252.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXS2_ECTSI9.530e-2345.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFC0_9PHAE1.320e-1937.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNI6_9PHAE2.730e-1936.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF9_9PHAE3.900e-1739.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH81_ECTSI1.310e-1637.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTK8_ECTSI1.610e-1637.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE2.710e-1640.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F9_ECTSI5.960e-1640.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12217contigL-elsbetiae_contig12217:2306..3054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size749
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12217.1846.1prot_L-elsbetiae_contig12217.1846.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12217 2524..2841 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.4358757-UTR-L-elsbetiae_contig12217:2305..25231622815421.4358757-UTR-L-elsbetiae_contig12217:2305..2523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12217 2306..2523 +
1691682889.6230836-UTR-L-elsbetiae_contig12217:2305..25231691682889.6230836-UTR-L-elsbetiae_contig12217:2305..2523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12217 2306..2523 +
1622815421.4582043-UTR-L-elsbetiae_contig12217:2841..30541622815421.4582043-UTR-L-elsbetiae_contig12217:2841..3054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12217 2842..3054 +
1691682889.640672-UTR-L-elsbetiae_contig12217:2841..30541691682889.640672-UTR-L-elsbetiae_contig12217:2841..3054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12217 2842..3054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.4470446-CDS-L-elsbetiae_contig12217:2523..28411622815421.4470446-CDS-L-elsbetiae_contig12217:2523..2841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12217 2524..2841 +
1691682889.6321156-CDS-L-elsbetiae_contig12217:2523..28411691682889.6321156-CDS-L-elsbetiae_contig12217:2523..2841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12217 2524..2841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12217.1846.1

>prot_L-elsbetiae_contig12217.1846.1 ID=prot_L-elsbetiae_contig12217.1846.1|Name=mRNA_L-elsbetiae_contig12217.1846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MKSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASALRSMGDVVSNVKRFH
LDDEFNGDVRGAAWPRELKVLTFGESFNNRSRKWPCQHRLKSWCLAETSI
SHCVR*
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mRNA from alignment at L-elsbetiae_contig12217:2306..3054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12217.1846.1 ID=mRNA_L-elsbetiae_contig12217.1846.1|Name=mRNA_L-elsbetiae_contig12217.1846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=749bp|location=Sequence derived from alignment at L-elsbetiae_contig12217:2306..3054+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCCCAACCGGTGTCTGGACGCTCTCATCATCGCTCTGAATCTGGTT AGTAACCAGGTTAGCGCCACAAGCGATGATACACGTCAACAAAGCAGCAA GCGATGGTACACGTCAACAAAGCAGCTCCAGCTCGCGTCGTTGGAAGTAT GTGCAGCCTGTCGAAGCGCGCCCACTCTGCACGTGAAAGTGGAGGAGGGA ACTCCTACCCGTTTATGGATGAAGTCCCCCATTCGAGAGACGCGCAGCAC GAAGAGGCCCAGTTTGACGCGTGTGCCGGTCGTACGACCGTTTGCAGTGA CATGGAATCTGCCAGCTTCGGCGCTACGGAGCATGGGCGATGTTGTGTCG AATGTGAAGCGTTTTCACCTCGACGATGAGTTTAACGGCGATGTGCGTGG GGCGGCCTGGCCACGTGAACTCAAGGTACTTACTTTCGGTGAATCATTCA ACAACCGATCACGAAAGTGGCCTTGCCAGCATCGCTTGAAAAGCTGGTGT TTGGCGGAGACTTCAATCAGCCATTGCGTGCGGTGACCTGGCCAGTGTCG TTGCAGGAGCTGTACTTTGTCGAAGTCGACCAGCCTCTCGTCGGAGTGTC ATGGCCGCCATCGCTACGAAGGTTGATGTGCTTCGGCAGCGTGCCAAACG AGTCTATTGCCGGAATCACCTGGCCTATGTCGCTAAAACATTTTTTTTTT GGGTGTGGCTTCAATCAGCCTATCGACACGGTCGCGTGGCCATCTTCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12217:2306..3054+

>mRNA_L-elsbetiae_contig12217.1846.1 ID=mRNA_L-elsbetiae_contig12217.1846.1|Name=mRNA_L-elsbetiae_contig12217.1846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig12217:2306..3054+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTCCCCCATTCGAGAGACGCGCAGCACGAAGAGGCCCAGTTTGAC
GCGTGTGCCGGTCGTACGACCGTTTGCAGTGACATGGAATCTGCCAGCTT
CGGCGCTACGGAGCATGGGCGATGTTGTGTCGAATGTGAAGCGTTTTCAC
CTCGACGATGAGTTTAACGGCGATGTGCGTGGGGCGGCCTGGCCACGTGA
ACTCAAGGTACTTACTTTCGGTGAATCATTCAACAACCGATCACGAAAGT
GGCCTTGCCAGCATCGCTTGAAAAGCTGGTGTTTGGCGGAGACTTCAATC
AGCCATTGCGTGCGGTGAATGAAGTCCCCCATTCGAGAGACGCGCAGCAC
GAAGAGGCCCAGTTTGACGCGTGTGCCGGTCGTACGACCGTTTGCAGTGA
CATGGAATCTGCCAGCTTCGGCGCTACGGAGCATGGGCGATGTTGTGTCG
AATGTGAAGCGTTTTCACCTCGACGATGAGTTTAACGGCGATGTGCGTGG
GGCGGCCTGGCCACGTGAACTCAAGGTACTTACTTTCGGTGAATCATTCA
ACAACCGATCACGAAAGTGGCCTTGCCAGCATCGCTTGAAAAGCTGGTGT
TTGGCGGAGACTTCAATCAGCCATTGCGTGCGGTGA
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