mRNA_L-elsbetiae_contig12217.1846.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 135 bits (341), Expect = 4.090e-35 Identity = 82/153 (53.59%), Postives = 95/153 (62.09%), Query Frame = 3 Query: 3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWM-KSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASALRSM-GDVVSNVKRFHLDDEFNGDV-RGAAWPRELKVLTFGESFN 452 GP+RCLDALIIALN Q S WYTST QLQLASLE+CA+CRS L + V+ GTPTRLW + RETRS KR ++TRVPVVR VTW LP ALR+M GD S V F L F+ D+ RG WP +L +L G FN Sbjct: 8 GPSRCLDALIIALN--------------QASGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLGPGFN 146
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 131 bits (329), Expect = 4.830e-32 Identity = 80/153 (52.29%), Postives = 92/153 (60.13%), Query Frame = 3 Query: 3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWM-KSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASALRSM-GDVVSNVKRFHLDDEFNGDV-RGAAWPRELKVLTFGESFN 452 GP+RCLDALIIALN Q S WYTST QLQL SLE+CAACRS L + V+ GTP RLW + RETRS KR ++TRVPVVR VTW LP ALR+M GD S V F L F+ D+ RG WP +L + G FN Sbjct: 39 GPSRCLDALIIALN--------------QASGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLFGVGPGFN 177
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 101 bits (252), Expect = 9.530e-23 Identity = 69/153 (45.10%), Postives = 81/153 (52.94%), Query Frame = 3 Query: 3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEG-TPTRLWMKSPIRETRS-TKRPSLTRVPVVRPFAVTWNLPASALRSMGDVVSNVKRFHL-DDEFNGDVRGAAWPRELKVLTFGESFN 452 GP RCL+A +ALN TS D WYTSTK+LQLASL+ C CR P+LH+ V P RLW E R+ KRPS T VPV RP VTW PA L + V + V+RF + D DV WP LK L FGE F+ Sbjct: 3 GPGRCLEAFAVALN--------TSCD-----GNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVERFLVRQDTVVDDV---VWPCRLKKLFFGEGFD 139
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 1.320e-19 Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = 3 Query: 3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWM----KSPIRETR--STKRPSLTRVPVVRPFAVTWNLPASALRSMGDVVSNVKRFHLDDEFNGDVRGAAWPRELKVLTFGESFN 452 GP+RCLDA +ALN + WY ST+QLQL+SL C ACRS PT+H+KV+ TP RL+ + +R+ S+KR RVP +R VTW L R G +S+V+ F L D N + A W ++ L+ G+ F+ Sbjct: 26 GPSRCLDAFKVALNQACD-------------GGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSLGQMFD 168
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 2.730e-19 Identity = 60/163 (36.81%), Postives = 81/163 (49.69%), Query Frame = 3 Query: 3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSL---TRVPVVRPFAVTWNLPASAL--RSMGDVVSNVKRFHLDDEFNG-DVRGAAWPRELKVLTFGESFNNRSRKWP 473 G ++CLDA ++ALN + KRWY ST +LQL SLEVC ACR TLHV+V+ TP LW S T + + P + +RVPVV+ F +TW LP L RS +V S + + + A WP+ LK + F + WP Sbjct: 5 GNSKCLDAFVVALNQACDG-----------QEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWP 156
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 3.900e-17 Identity = 59/148 (39.86%), Postives = 80/148 (54.05%), Query Frame = 3 Query: 3 GPNR--CLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASA-LRSMGDVVSNVKRFHLDDEFNGDVRGAAWPRELKVLTF 437 GP R CL+ALI+ALN T D K WYTSTK+LQLASL+ C ACR+ T+H+ V+E P RL + S KR TRVP +R VTWN+P +A LR+ +++++ D F + WP L+ + F Sbjct: 45 GPTRKFCLEALIVALN-------ETCDG------KSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRL-LASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEF 178
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 1.310e-16 Identity = 61/162 (37.65%), Postives = 82/162 (50.62%), Query Frame = 3 Query: 9 NRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASALRSMGD---VVSNVKRFHLDDEFNGDVRGAAWPRELKVLTF--GESFNNRSR--KWP 473 N CL +LI+ALN T D T WYTSTK+LQ ASLE C ACR+ P +H+KV+ P L + KR TRVP +R +VTWN+ A+A +G+ +++V F+G + WPR LK++ F FN KWP Sbjct: 12 NPCLSSLIVALN-------ETCDGTS------WYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHP-KRLCWTRVPRLRARSVTWNMRAAA--ELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWP 157
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 1.610e-16 Identity = 60/162 (37.04%), Postives = 72/162 (44.44%), Query Frame = 3 Query: 3 GPNRCLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSL---TRVPVVRPFAVTWNLPASAL--RSMGDVVSNVKRFHLDDE-FNGDVRGAAWPRELKVLTFGESFNNRSRKW 470 G LD LI+ALN + KRWY ST +LQL SLE+C ACRSA LHV V E TP LW R T S + P + RVP V+ TW LP L R+ + +R D F V WP LK L F ++ W Sbjct: 85 GGGSSLDTLIVALNQACDG-----------QEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVFSRRMPGKAVWW 235
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 2.710e-16 Identity = 61/151 (40.40%), Postives = 76/151 (50.33%), Query Frame = 3 Query: 3 GPNR--CLDALIIALNLVSNQVSATSDDTRQQSSKRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIRETRSTKRPSLTRVPVVRPFAVTWNLP-ASALRSMGDVVSNVKRFHLDDEFNGDVRGAAWPRELKVLTFGES 446 GP R CL L +ALN T D K WYTSTK+LQLASLE+C ACR TLH+ V+ TP RL + KR TRVP +R TWN+P AS +R+ +V F+G + WPR LK + F +S Sbjct: 130 GPTRSSCLKTLTVALN-------ETCDG------KSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHP-KRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQS 266
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 5.960e-16 Identity = 50/124 (40.32%), Postives = 68/124 (54.84%), Query Frame = 3 Query: 99 KRWYTSTKQLQLASLEVCAACRSAPTLHVKVEEGTPTRLWMKSPIR---ETRSTKRPSLTRVPVVRPFAVTWNLPASAL--RSMGDVVSNVKRFHLDDEFNGDVRGAA-WPRELKVLTFGESFN 452 KRWYTST +LQL SL++C ACRS PTLHV+V GTPT LW ++ T+S+K ++RVPVVR +TW L R+ ++ S +R + G+ WP L L F+ Sbjct: 26 KRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTDFH 149 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12217.1846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12217.1846.1 >prot_L-elsbetiae_contig12217.1846.1 ID=prot_L-elsbetiae_contig12217.1846.1|Name=mRNA_L-elsbetiae_contig12217.1846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp MKSPIRETRSTKRPSLTRVPVVRPFAVTWNLPASALRSMGDVVSNVKRFHback to top mRNA from alignment at L-elsbetiae_contig12217:2306..3054+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12217.1846.1 ID=mRNA_L-elsbetiae_contig12217.1846.1|Name=mRNA_L-elsbetiae_contig12217.1846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=749bp|location=Sequence derived from alignment at L-elsbetiae_contig12217:2306..3054+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12217:2306..3054+ >mRNA_L-elsbetiae_contig12217.1846.1 ID=mRNA_L-elsbetiae_contig12217.1846.1|Name=mRNA_L-elsbetiae_contig12217.1846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig12217:2306..3054+ (Laminarionema elsbetiae ELsaHSoW15)back to top |