mRNA_L-elsbetiae_contig12213.1843.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12213.1843.1
Unique NamemRNA_L-elsbetiae_contig12213.1843.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12213.1843.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 6.760e-19
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 2 
Query:    2 GVDTTKAV*LTVAGSVIIFDNTPLALAELLLSGKKIGGKDATASQLHSLEATQRLMMRAETVHAISWLWASDAPSASHAAAKVAGKTKASPPPLVMMLPILRQR 313
            G DTT  V +T     + +++TPLA+   LL  K + GK AT  QLH L+A +RL++R + VHA+SWLW SDAPS  HA  +  G     PP L + LPIL++R
Sbjct:   88 GADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPP-LSLTLPILKRR 190
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BLAST of mRNA_L-elsbetiae_contig12213.1843.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.880e-9
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 2 
Query:    2 GVDTTKAV*LTVAGSVIIFDNTPLALAELLLSGKKI-GGKDATASQLHSLEATQRLMMRAETVHAISWLWASDAPSASHAAAK 247
            G DTT  +  T +   +  + TPLAL    L  K +  G+ AT   L  LEA +RL++RAE VHA+SWLW SDA    HAA K
Sbjct:  296 GADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEK 378
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BLAST of mRNA_L-elsbetiae_contig12213.1843.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.010e-8
Identity = 42/104 (40.38%), Postives = 54/104 (51.92%), Query Frame = 2 
Query:    2 GVDTTKAV*LTVAGSVIIFDNTPLALAELLLSGKKIGGKDATASQLHSLEATQRLMMRAETVHAISWLWASDAPSASHAAAKVAGKTKASPPPLVMMLPILRQR 313
            G DTT AV L    S    + TPL         +  G   AT  QL  LEAT+R+++R   VHA+SW+W SDAP  +  A       K SP  L  +LP+LR+R
Sbjct:  286 GADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPA-NSPRTAKHSPTQLTTVLPVLRRR 388
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12213.1843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSC5_ECTSI6.760e-1946.15EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVU0_ECTSI3.880e-945.78EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVU3_ECTSI1.010e-840.38EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12213contigL-elsbetiae_contig12213:2353..2673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.2937996-CDS-L-elsbetiae_contig12213:2352..26731622815421.2937996-CDS-L-elsbetiae_contig12213:2352..2673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12213 2353..2673 +
1691682889.567043-CDS-L-elsbetiae_contig12213:2352..26731691682889.567043-CDS-L-elsbetiae_contig12213:2352..2673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12213 2353..2673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12213.1843.1prot_L-elsbetiae_contig12213.1843.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12213 2353..2673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12213.1843.1

>prot_L-elsbetiae_contig12213.1843.1 ID=prot_L-elsbetiae_contig12213.1843.1|Name=mRNA_L-elsbetiae_contig12213.1843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
GSGHNKGCLTDSRRECHNIRQHAPGFGRVAPQWQEDRRKRRYSEPAAQPG
GYPAVDDEGGDRSCDLLAVGKRRPLRVSRCCKGCRQDQGIPAPAGNDVAN
LEAKKAQ
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mRNA from alignment at L-elsbetiae_contig12213:2353..2673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12213.1843.1 ID=mRNA_L-elsbetiae_contig12213.1843.1|Name=mRNA_L-elsbetiae_contig12213.1843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=321bp|location=Sequence derived from alignment at L-elsbetiae_contig12213:2353..2673+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGTGGACACAACAAAGGCTGTTTGACTGACAGTCGCAGGGAGTGTCA
TAATATTCGACAACACGCCCCTGGCTTTGGCAGAGTTGCTCCTCAGTGGC
AAGAAGATCGGAGGAAAAGACGCTACAGCGAGCCAGCTGCACAGCCTGGA
GGCTACCCAGCGGTTGATGATGAGGGCGGAGACCGTTCATGCGATCTCTT
GGCTGTGGGCAAGCGACGCCCCCTCCGCGTCTCACGCTGCTGCAAAGGTT
GCAGGCAAGACCAAGGCATCCCCGCCCCCGCTGGTAATGATGTTGCCAAT
CTTGAGGCAAAGAAAGCCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12213:2353..2673+

>mRNA_L-elsbetiae_contig12213.1843.1 ID=mRNA_L-elsbetiae_contig12213.1843.1|Name=mRNA_L-elsbetiae_contig12213.1843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig12213:2353..2673+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGTGGACACAACAAAGGCTGTTTGACTGACAGTCGCAGGGAGTGTCA
TAATATTCGACAACACGCCCCTGGCTTTGGCAGAGTTGCTCCTCAGTGGC
AAGAAGATCGGAGGAAAAGACGCTACAGCGAGCCAGCTGCACAGCCTGGA
GGCTACCCAGCGGTTGATGATGAGGGCGGAGACCGTTCATGCGATCTCTT
GGCTGTGGGCAAGCGACGCCCCCTCCGCGTCTCACGCTGCTGCAAAGGTT
GCAGGCAAGACCAAGGCATCCCCGCCCCCGCTGGTAATGATGTTGCCAAT
CTTGAGGCAAAGAAAGCCCAGGGGAGTGGACACAACAAAGGCTGTTTGAC
TGACAGTCGCAGGGAGTGTCATAATATTCGACAACACGCCCCTGGCTTTG
GCAGAGTTGCTCCTCAGTGGCAAGAAGATCGGAGGAAAAGACGCTACAGC
GAGCCAGCTGCACAGCCTGGAGGCTACCCAGCGGTTGATGATGAGGGCGG
AGACCGTTCATGCGATCTCTTGGCTGTGGGCAAGCGACGCCCCCTCCGCG
TCTCACGCTGCTGCAAAGGTTGCAGGCAAGACCAAGGCATCCCCGCCCCC
GCTGGTAATGATGTTGCCAATCTTGAGGCAAAGAAAGCCCAG
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