mRNA_L-elsbetiae_contig12209.1841.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12209.1841.1
Unique NamemRNA_L-elsbetiae_contig12209.1841.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12209.1841.1 vs. uniprot
Match: D8LM78_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM78_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 3.280e-25
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 2 
Query:    2 RLAGDIGKLINDKLVRLLSRLVMRETLKTSTLTSVVIASLALDTDARGRR-QGKHNKSLNPPPVQ--------ASEPAGPPGAESEVADFPASAAAAAAVEH 280
            RL GDIGKL+NDKLVRLL+RLVMRETLKTSTLTSVVI SLALDTDARGRR QGKHNKSL+PPP++        ASE   P  A +     P SA A+A  E+
Sbjct:  607 RLPGDIGKLLNDKLVRLLARLVMRETLKTSTLTSVVITSLALDTDARGRRLQGKHNKSLSPPPIERGHRRHAGASETTLPVHASAVATAAPTSATASAGSEN 708
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12209.1841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM78_ECTSI3.280e-2566.67Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12209contigL-elsbetiae_contig12209:365..1106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815420.7832108-CDS-L-elsbetiae_contig12209:364..5921622815420.7832108-CDS-L-elsbetiae_contig12209:364..592Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12209 365..592 +
1691682889.2715974-CDS-L-elsbetiae_contig12209:364..5921691682889.2715974-CDS-L-elsbetiae_contig12209:364..592Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12209 365..592 +
1622815420.7987292-CDS-L-elsbetiae_contig12209:1046..11061622815420.7987292-CDS-L-elsbetiae_contig12209:1046..1106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12209 1047..1106 +
1691682889.2820003-CDS-L-elsbetiae_contig12209:1046..11061691682889.2820003-CDS-L-elsbetiae_contig12209:1046..1106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12209 1047..1106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12209.1841.1prot_L-elsbetiae_contig12209.1841.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12209 365..1106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12209.1841.1

>prot_L-elsbetiae_contig12209.1841.1 ID=prot_L-elsbetiae_contig12209.1841.1|Name=mRNA_L-elsbetiae_contig12209.1841.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
QAGRRHRQADQRQARAPPLQAGDAGDAQDVDAHERGHRVARARHRRPGAP
PGQAQQVAQPAARASERACGPPRRGKRGSRLSCVSGGGGRGGAQAR
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mRNA from alignment at L-elsbetiae_contig12209:365..1106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12209.1841.1 ID=mRNA_L-elsbetiae_contig12209.1841.1|Name=mRNA_L-elsbetiae_contig12209.1841.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=742bp|location=Sequence derived from alignment at L-elsbetiae_contig12209:365..1106+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCTGGCCGGCGACATCGGCAAGCTGATCAACGACAAGCTCGTGCGCC
TCCTCTCCAGGCTGGTGATGCGGGAGACGCTCAAGACGTCGACGCTCACG
AGCGTGGTCATCGCGTCGCTCGCGCTCGACACCGACGCCCGGGGGCGCCG
CCAGGGCAAGCACAACAAGTCGCTCAACCCGCCGCCCGTGCAAGCGAGCG
AGCCTGCGGGCCCCCCCGGCGCGGAAAGGTGGGGGGAATATCGAGATGGG
TCAGAGCGGGAGGAGGAACGGAGATTGAGTAGCGGTATGATTGCTTCACC
TCCCCGCGCGTATTTGGACGCAGGTGTGCGTGTAGTTGTGGGGCTTTTCA
TTTTGCTAGAGCCCCGGGGAGCGCTCCGGCCCCGGACCGCGAAAGTGTAA
TCGATTGCATCAAGTCAAGAGTCAGATCGACGCTTCGCGTTGCTGTGCGG
TGTGCGAAGAATAGGTAGGGTAGGGTAGGGTAGCGCAAGGGTTCATTCGG
TGGCGCGTGTACGGTTTGCTACTGCTGTGTGCTGCAAGCCCCCCCATAAC
CGCTGCTGTTGTGGTCGTTCGCTTTTCAAACATGTGGCCTGCCTATCCCT
GTGTGATCGATAATCTCAAGTATTGTTCGATTTCCCGATTATTCTCCCTC
TTGTCGCGAAACGGAACTCTCTCTTCGGGCAGCGAGGTAGCCGACTTTCC
TGCGTCAGCGGCGGCGGCGGCCGCGGTGGAGCACAGGCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12209:365..1106+

>mRNA_L-elsbetiae_contig12209.1841.1 ID=mRNA_L-elsbetiae_contig12209.1841.1|Name=mRNA_L-elsbetiae_contig12209.1841.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig12209:365..1106+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCTGGCCGGCGACATCGGCAAGCTGATCAACGACAAGCTCGTGCGCC
TCCTCTCCAGGCTGGTGATGCGGGAGACGCTCAAGACGTCGACGCTCACG
AGCGTGGTCATCGCGTCGCTCGCGCTCGACACCGACGCCCGGGGGCGCCG
CCAGGGCAAGCACAACAAGTCGCTCAACCCGCCGCCCGTGCAAGCGAGCG
AGCCTGCGGGCCCCCCCGGCGCGGAAAGCAGGCTGGCCGGCGACATCGGC
AAGCTGATCAACGACAAGCTCGTGCGCCTCCTCTCCAGGCTGGTGATGCG
GGAGACGCTCAAGACGTCGACGCTCACGAGCGTGGTCATCGCGTCGCTCG
CGCTCGACACCGACGCCCGGGGGCGCCGCCAGGGCAAGCACAACAAGTCG
CTCAACCCGCCGCCCGTGCAAGCGAGCGAGCCTGCGGGCCCCCCCGGCGC
GGAAAGCGAGGTAGCCGACTTTCCTGCGTCAGCGGCGGCGGCGGCCGCGG
TGGAGCACAGGCCCGGCGAGGTAGCCGACTTTCCTGCGTCAGCGGCGGCG
GCGGCCGCGGTGGAGCACAGGCCCGG
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