mRNA_L-elsbetiae_contig1220.1837.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1220.1837.1
Unique NamemRNA_L-elsbetiae_contig1220.1837.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1220.1837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1220contigL-elsbetiae_contig1220:12883..14012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size329
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1220.1837.1prot_L-elsbetiae_contig1220.1837.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1220 12883..14012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815419.8619099-CDS-L-elsbetiae_contig1220:12882..130561622815419.8619099-CDS-L-elsbetiae_contig1220:12882..13056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1220 12883..13056 -
1691682888.94045-CDS-L-elsbetiae_contig1220:12882..130561691682888.94045-CDS-L-elsbetiae_contig1220:12882..13056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1220 12883..13056 -
1622815419.870679-CDS-L-elsbetiae_contig1220:13622..137161622815419.870679-CDS-L-elsbetiae_contig1220:13622..13716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1220 13623..13716 -
1691682888.949688-CDS-L-elsbetiae_contig1220:13622..137161691682888.949688-CDS-L-elsbetiae_contig1220:13622..13716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1220 13623..13716 -
1622815419.8794265-CDS-L-elsbetiae_contig1220:13953..140121622815419.8794265-CDS-L-elsbetiae_contig1220:13953..14012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1220 13954..14012 -
1691682888.962149-CDS-L-elsbetiae_contig1220:13953..140121691682888.962149-CDS-L-elsbetiae_contig1220:13953..14012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1220 13954..14012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1220.1837.1

>prot_L-elsbetiae_contig1220.1837.1 ID=prot_L-elsbetiae_contig1220.1837.1|Name=mRNA_L-elsbetiae_contig1220.1837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
NKDRQELAHIDSKINSEASKYEALLENLNVRRAERDRMIHHLARCKADNF
ALLGDACARTGWVRRQDIRMLKSVSSMELQAARGFGSGPGTTFSRRRTGG
GGSSVGAGG
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mRNA from alignment at L-elsbetiae_contig1220:12883..14012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1220.1837.1 ID=mRNA_L-elsbetiae_contig1220.1837.1|Name=mRNA_L-elsbetiae_contig1220.1837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1130bp|location=Sequence derived from alignment at L-elsbetiae_contig1220:12883..14012- (Laminarionema elsbetiae ELsaHSoW15)
AATAAGGATCGGCAGGAGCTGGCACACATCGATAGCAAGATAAACAGTGA
AGCTAGCAAGTGAGCACCACCCCTGGCGTACGTAATGTGCATGCAGACTA
CTGCCGTAGATAGTCTACGGGCCGTACATAAATAGTCTAGACTAGACTAT
ACGGTAGACCATATCTATGCTCGGATGACCGCACACCCTCATGAGTTAAT
CGATATCTCGCCAGATTACTGTACGCATCAACTGTCCTCTTTCAACAGAC
CTGACCACACGTTGCACGTGCTACTGCCCCTGTTCTTGTGTGGAAGGTAT
GAAGCCCTCTTAGAGAATTTGAACGTTCGCCGAGCAGAGCGAGATCGGAT
GATTCACCATCTCGCGCGGTGTAAGGCTGATAATTTTGCGGTAAGTCCAC
TGCCCTTTCGTTCTAAGTACTCGCATCAATTTTAGCTGCTGCATAGACTA
TGTATGTATGTCAGGTGAAGGTACAAACAATTTTGGCATAGGCGCAACCG
ACGTACTCTGAGCTGGGTTCGATACTTTTTGGCCTATGTCCCATTTGGCT
GGTAACGGATGCATGTCTATCTAGAATACTAGAGTACAGTTACAAAAGTA
CAACAAGCATTTCCTGCTCATGCAAATCGCCGAGGACGTGCATCTTTCAA
CGACGCACAAGGAAACTGGAAGCACACGCTTCACCGGGCTACAATATTGT
TGCTGGGTGCCAACGCCGCGTTTTCACCCAAATTGGCCAGTGTGGGTCGC
ATGAACCCTGCTTGTACCCGACCTCCCGTAGCGCCTTGCTCTCTCTGCAC
GGTGGAAAGCGCCAACACGGTTCCTACCCCTCCTTGGGAGGGTGAAACAC
AACTTGGTAACGTACTGCATACCGACAACGATGAGTGTCGAGACCCTCCT
TGTCCAGCCGTCTTGTCTCATCGGCGAACTCTCGCGCATTCTCTTTTTTC
ACTCAGCTCCTAGGAGATGCGTGCGCGAGGACAGGCTGGGTGCGAAGACA
GGACATCAGAATGCTCAAATCCGTCTCGAGCATGGAGCTCCAAGCCGCGA
GGGGGTTCGGCTCGGGTCCCGGGACGACGTTCAGCCGCAGGCGGACAGGA
GGCGGGGGCTCCTCGGTGGGCGCAGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1220:12883..14012-

>mRNA_L-elsbetiae_contig1220.1837.1 ID=mRNA_L-elsbetiae_contig1220.1837.1|Name=mRNA_L-elsbetiae_contig1220.1837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1220:12883..14012- (Laminarionema elsbetiae ELsaHSoW15)
AATAAGGATCGGCAGGAGCTGGCACACATCGATAGCAAGATAAACAGTGA
AGCTAGCAAAATAAGGATCGGCAGGAGCTGGCACACATCGATAGCAAGAT
AAACAGTGAAGCTAGCAAGTATGAAGCCCTCTTAGAGAATTTGAACGTTC
GCCGAGCAGAGCGAGATCGGATGATTCACCATCTCGCGCGGTGTAAGGCT
GATAATTTTGCGGTATGAAGCCCTCTTAGAGAATTTGAACGTTCGCCGAG
CAGAGCGAGATCGGATGATTCACCATCTCGCGCGGTGTAAGGCTGATAAT
TTTGCGCTCCTAGGAGATGCGTGCGCGAGGACAGGCTGGGTGCGAAGACA
GGACATCAGAATGCTCAAATCCGTCTCGAGCATGGAGCTCCAAGCCGCGA
GGGGGTTCGGCTCGGGTCCCGGGACGACGTTCAGCCGCAGGCGGACAGGA
GGCGGGGGCTCCTCGGTGGGCGCAGGGGGGCTCCTAGGAGATGCGTGCGC
GAGGACAGGCTGGGTGCGAAGACAGGACATCAGAATGCTCAAATCCGTCT
CGAGCATGGAGCTCCAAGCCGCGAGGGGGTTCGGCTCGGGTCCCGGGACG
ACGTTCAGCCGCAGGCGGACAGGAGGCGGGGGCTCCTCGGTGGGCGCAGG
GGGG
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