mRNA_L-elsbetiae_contig122.1831.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig122.1831.1
Unique NamemRNA_L-elsbetiae_contig122.1831.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig122.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig122contigL-elsbetiae_contig122:34692..35091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size390
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815419.603966-UTR-L-elsbetiae_contig122:34691..347011622815419.603966-UTR-L-elsbetiae_contig122:34691..34701Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig122 34692..34701 +
1691682888.8118062-UTR-L-elsbetiae_contig122:34691..347011691682888.8118062-UTR-L-elsbetiae_contig122:34691..34701Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig122 34692..34701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815419.613069-CDS-L-elsbetiae_contig122:34701..350911622815419.613069-CDS-L-elsbetiae_contig122:34701..35091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 34702..35091 +
1691682888.8204892-CDS-L-elsbetiae_contig122:34701..350911691682888.8204892-CDS-L-elsbetiae_contig122:34701..35091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig122 34702..35091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig122.1831.1prot_L-elsbetiae_contig122.1831.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig122 34702..35091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig122.1831.1

>prot_L-elsbetiae_contig122.1831.1 ID=prot_L-elsbetiae_contig122.1831.1|Name=mRNA_L-elsbetiae_contig122.1831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MASAGFGTGFCSFWNNQQHETACSRFRLIYSSPAPRPKRKATHVYVCTGS
EVPRTCECFWLAGGEGAAVDAVHNTTGTVKIRGLAQFRATCMYALVYIAR
AHETGFGGGSNNGTLPDLELAGDDGDERT*
back to top

mRNA from alignment at L-elsbetiae_contig122:34692..35091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig122.1831.1 ID=mRNA_L-elsbetiae_contig122.1831.1|Name=mRNA_L-elsbetiae_contig122.1831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=400bp|location=Sequence derived from alignment at L-elsbetiae_contig122:34692..35091+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTAAGTAATGGCTTCTGCAGGTTTTGGAACCGGGTTCTGCAGCTTCT
GGAACAACCAGCAACACGAAACGGCTTGTTCTCGGTTTCGGTTGATTTAT
TCATCTCCAGCACCCAGGCCGAAACGCAAAGCGACACACGTCTATGTATG
CACAGGGTCGGAGGTGCCAAGAACCTGCGAATGCTTCTGGCTTGCCGGTG
GTGAGGGTGCTGCTGTTGATGCGGTTCATAACACGACGGGGACCGTGAAA
ATACGGGGTTTGGCGCAATTCCGTGCGACATGTATGTATGCACTTGTGTA
CATCGCTAGAGCACACGAGACAGGTTTTGGTGGAGGCAGCAACAACGGAA
CTCTGCCAGACCTTGAGCTTGCCGGTGATGACGGCGATGAGCGCACTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig122:34692..35091+

>mRNA_L-elsbetiae_contig122.1831.1 ID=mRNA_L-elsbetiae_contig122.1831.1|Name=mRNA_L-elsbetiae_contig122.1831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig122:34692..35091+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCTGCAGGTTTTGGAACCGGGTTCTGCAGCTTCTGGAACAACCA
GCAACACGAAACGGCTTGTTCTCGGTTTCGGTTGATTTATTCATCTCCAG
CACCCAGGCCGAAACGCAAAGCGACACACGTCTATGTATGCACAGGGTCG
GAGGTGCCAAGAACCTGCGAATGCTTCTGGCTTGCCGGTGGTGAGGGTGC
TGCTGTTGATGCGGTTCATAACACGACGGGGACCGTGAAAATACGGGGTT
TGGCGCAATTCCGTGCGACATGTATGTATGCACTTGTGTACATCGCTAGA
GCACACGAGACAGGTTTTGGTGGAGGCAGCAACAACGGAACTCTGCCAGA
CCTTGAGCTTGCCGGTGATGACGGCGATGAGCGCACTTGAATGGCTTCTG
CAGGTTTTGGAACCGGGTTCTGCAGCTTCTGGAACAACCAGCAACACGAA
ACGGCTTGTTCTCGGTTTCGGTTGATTTATTCATCTCCAGCACCCAGGCC
GAAACGCAAAGCGACACACGTCTATGTATGCACAGGGTCGGAGGTGCCAA
GAACCTGCGAATGCTTCTGGCTTGCCGGTGGTGAGGGTGCTGCTGTTGAT
GCGGTTCATAACACGACGGGGACCGTGAAAATACGGGGTTTGGCGCAATT
CCGTGCGACATGTATGTATGCACTTGTGTACATCGCTAGAGCACACGAGA
CAGGTTTTGGTGGAGGCAGCAACAACGGAACTCTGCCAGACCTTGAGCTT
GCCGGTGATGACGGCGATGAGCGCACTTGA
back to top