mRNA_L-elsbetiae_contig122.1830.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 158 bits (400), Expect = 3.370e-40 Identity = 107/244 (43.85%), Postives = 146/244 (59.84%), Query Frame = 2 Query: 380 LNSSRDHAAVPC--GSQGAFEVGQGAVLRAEADPLFGG*RDPRDCG-EKGVPLEAAVQNVHVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDNVHQPYGYTPLVTSFFCGTSCSPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLGLTDVCLRDKRVADYNVTEE*LHGVKAVRRMLLRVEAVHAI 1102 +N+ R A P + V +L A+ADPL D G E+ +PL+ A QN H EV E+ +QVGI+ CGG+SGG +AL AA + R+D++AIL DAGVVDTGLAL A + GEA +K L++Q + R ++ R AY++ ++ G T L+ C PR+ QLLV+AGADTTS V I N G + TPLGLT +CL R A EE + ++ +RR+LLR EAVHA+ Sbjct: 141 INTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLL---TCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQ-ARGRKSTDRAAYMNTLNG-VGLTSLLDGI---QRCRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLT-MCLLGGRSAKPLTMEE-QNKLEVIRRLLLREEAVHAV 374
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.270e-39 Identity = 106/246 (43.09%), Postives = 143/246 (58.13%), Query Frame = 2 Query: 380 LNSSRDHAAVPCGS---QGAFEVGQGAVLRAEADPLFGG*RDPRDCGEKGVPLEAAVQNVHVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDNVHQPYGYTPLVTSFFCGTSCSPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLGLTDVCLRDKR--VADYNVTEE*LHGVKAVRRMLLRVEAVHAI 1102 LNS R A P + +G + + +L A+ADPL DP G +PL+AA +N H EV E+ +QVGI+ CGG+SGG AL AAQ+ ++++ IL +AGVVDTGLAL A + GE +K L++Q + R AY+ N G TPL+ PR+ +LLV+AGADTTS V + N G TPLGLT +RDK V + E LH ++A+RR+LLRVEAVHA+ Sbjct: 141 LNSRRSDGATPLYTAAWKGNVDAAR-LLLLAKADPLLTTVPDP--SGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQ-ARARKTMDEAAYV-NTRDRGGVTPLLWGI---QHYRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAV 378
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 152 bits (383), Expect = 2.790e-37 Identity = 104/233 (44.64%), Postives = 134/233 (57.51%), Query Frame = 2 Query: 428 AFEVGQGAV----LRAEADPLFGG*RDPRDCGEKGVPLEAAVQNVHVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDNVHQPYGYTPLVTSFFCGTSC---SPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLGLTDVCLRDKRVADYN-VTEE*LHGVKAVRRMLLRVEAVHAI 1102 A E GQ AV LR A+PL P + VPL+ A ++ H +V RE+ Q++GIE C S G AL AA +D++AIL +AGVVDTG AL A EASVK L++ K AYL N GYTPLV C C +PRI ++LVDAGADTTS V+++N KG + TPL T + LR K VAD T+E L ++A+ R+LLRV+AVHA+ Sbjct: 247 AAEEGQVAVMRELLRGNANPLLIQTSPPGNTTT--VPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYL-NARDVNGYTPLVV---CTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAV 473
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 143 bits (360), Expect = 1.050e-34 Identity = 90/213 (42.25%), Postives = 119/213 (55.87%), Query Frame = 2 Query: 509 GEKGVPLEAAVQNVHVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDNVHQPYGYTPLVTSFFCGTSCSPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLGLTDVCLRDKRVADYNVTEE*LHGVKAVRRMLLRVEAVHAIRGF-----GKPMIPG 1132 G VPL+ A N H+ VARE+ Q+ GI C GAS G DAL AA +D++A+L DAGVVDTG AL E ++K L++Q G+ + R Y G+TPL+++ G CSPR+ +LLVDAGAD T AVR+ + GR TPL CL +K V + T + L ++A RR+LL+VE VHA G P PG Sbjct: 179 GNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQKGE---GTARTTYASTPRDGRGHTPLLSAVTTGP-CSPRVVRLLVDAGADATLAVRVPDGFGRSTKY-TPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPAAPG 386
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 140 bits (354), Expect = 6.890e-34 Identity = 96/220 (43.64%), Postives = 134/220 (60.91%), Query Frame = 2 Query: 452 VLRAEADPLFGG*RDPRDCGEKGVPLEAAVQNVHVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDNVHQPYGYTPLVTSFF-CGT---SCSPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLGLTDVCLRDKRVADYNVTEE*LHGVKAVRRMLLRVEAVHA 1099 +LRA A+PL R +PL++A +N ++ V RE+ Q+VGIE CGG S G AL +A + RV +A+L AGVVDTG AL + EASVK L+Q K G AY+ NV G TPL++S + CG S PR+A+LLV+AGADTT+ +R N+ G + TPL LT L+DK+V ++++ L ++ +RR+LL+VEAVHA Sbjct: 153 LLRANANPLI-----TRAPLPTLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHAK---HYGPGAYV-NVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHA 363
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE) HSP 1 Score: 140 bits (353), Expect = 8.320e-34 Identity = 86/214 (40.19%), Postives = 117/214 (54.67%), Query Frame = 2 Query: 458 RAEADPLFGG*RDPRDCGEKGVPLEAAVQNVHVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDNVHQPYGYTPLVTSF---FCGTSCSPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLGLTDVCLRDKRVADYNVTEE*LHGVKAVRRMLLRVEA 1090 RA+A+PL P G VPL+ A + EV RE+ +QV I+ CGGASGG AL LAA VD++++L DAGV+DTG AL A + EA VKLL+QQ Y+++ H G TPL+ S G CSPR+ +LLVDAGADT SAV + G+ TP+ L + E+ +H ++A+ R+ +VEA Sbjct: 171 RAKANPLL---TKPTPSGVTFVPLDTAAEYGQTEVVRELIKQVSIKGCGGASGGVYALRLAALSQNVDVMSVLADAGVMDTGEALITAAGRNDEAGVKLLLQQRHGTSAGGELYMYVNDTHDLVGRTPLLCSIDGGMAGFRCSPRVVRLLVDAGADTVSAVPLKGTAGQIGRSVTPIDFATCSLHENMDGGKTAMEKHVHKLRAIHRLFSQVEA 381
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 139 bits (350), Expect = 3.430e-33 Identity = 89/216 (41.20%), Postives = 119/216 (55.09%), Query Frame = 2 Query: 458 RAEADPLFGG*RDPRDCGEKGVPLEAAVQNVHVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDNVHQPYGYTPLVTSFFCGT--SCSPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLGLTDVCLRDKRVADYNVTEE*LHGVKAVRRMLLRVEAVHA 1099 RA+A+PL + + +PL+ A QN + V E+ Q+ GI CGG +GG AL LAA +D++ L AGVVDTG+AL +A VK L+QQ S + AY+ P G TPL+ + G SCSP++ +LLVDAGADTTS VR G + TPL L LR K + +E L ++ +RR+LLRVEAVHA Sbjct: 168 RAKANPLL----TRVNLAWQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGT--PSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHA 377
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI) HSP 1 Score: 139 bits (350), Expect = 8.220e-33 Identity = 93/212 (43.87%), Postives = 121/212 (57.08%), Query Frame = 2 Query: 467 ADPLFGG*RDPRDCGEKGVPLEAAVQNVHVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDNVHQPYGYTPLVTSFFCGTSCSPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLGLTDVCLRDKRVADYNVTEE*LHGVKAVRRMLLRVEAVHAI 1102 ADPL G P G +PL+ A V RE+ Q++GIERCGG S G DAL LA V ++A+L AGVVD G AL A EASVK L++Q AS R AY++ +++ +G TPL+ + CG CS RI +LLVDAGADTT+A R+ KG+ T L L +K+ T E H ++A R+LL+VEA HAI Sbjct: 172 ADPLLGNVL-PSTGGVCFLPLDVAXXXXXSAVVRELLQRLGIERCGGESRGVDALCLAVTGRHVGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGKHSAS-RSAYVNKLNR-FGLTPLLENITCG-HCSARIVRLLVDAGADTTAAYRLTGKKGQAMAATTHLTAMGCLLLEKKAK--GDTGEEPHNLQATFRLLLQVEAAHAI 377
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: D7FYA6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA6_ECTSI) HSP 1 Score: 133 bits (334), Expect = 2.610e-30 Identity = 82/187 (43.85%), Postives = 112/187 (59.89%), Query Frame = 2 Query: 551 HVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQ--WGKVRVASGREAYLDNVHQPYGYTPLVTSFFCGT-SCSPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLGLTDVCLRDKRVADYNVTEE*LHGVKAVRRMLLRVEAVHAI 1102 H V R++ QQ+GI+ CGGAS G DAL A + + D++ +L DAGV+DTG L A EASVK+L+QQ W + Y++ H P G TP+V S S SPR+ +L +DAGADT S VRI N +G + GTPL T LRD++ + T+ G+KAV RMLL++EA+ A+ Sbjct: 330 HATVVRKLIQQLGIQGCGGASAGADALRRAVRTQQYDIVVMLADAGVIDTGRVLIDATKFGSEASVKILLQQQRWKHM----DWNTYVNKKH-PDGRTPVVCSIGRALLSGSPRVLRLFLDAGADTASTVRIANKEGVEVFSGTPLAYTTWLLRDQQAQAIDSTKGQPCGLKAVCRMLLQLEAIRAV 511
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 127 bits (320), Expect = 2.980e-29 Identity = 90/220 (40.91%), Postives = 126/220 (57.27%), Query Frame = 2 Query: 455 LRAEADPLFGG*RDPRDCGEKGVPLEAAVQNVHVEVAREITQQVGIERCGGASGGFDALDLAAQWHRVDMIAILIDAGVVD-TGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDNVHQPYGYTPLVTSFFCGTS--CSPRIAQLLVDAGADTTSAVRIINAKGRGFYIGTPLG-LTDVCLRDKRVADYNVTEE*LHGVKAVRRMLLRVEAVHAI 1102 L A+A+PL G VPLE A Q V E+ ++ GI CGG SGG DAL +AA + +VD++++L+DAGVVD GLAL A EA+V L++Q + + +Y++ G T L+ SF + C+PRI + LVDAGADTTSAV++ + R TPL + D LR+ D+ T+E L ++A RR+LLRV AVHA+ Sbjct: 138 LHAKANPLLTW--SSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQ----QEERWQTSYVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETN-GDHPATDEQLLRLEATRRVLLRVVAVHAV 350 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig122.1830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig122.1830.1 >prot_L-elsbetiae_contig122.1830.1 ID=prot_L-elsbetiae_contig122.1830.1|Name=mRNA_L-elsbetiae_contig122.1830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp MIAILIDAGVVDTGLALQRACMHSGEASVKLLVQQWGKVRVASGREAYLDback to top mRNA from alignment at L-elsbetiae_contig122:29194..30462+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig122.1830.1 ID=mRNA_L-elsbetiae_contig122.1830.1|Name=mRNA_L-elsbetiae_contig122.1830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1269bp|location=Sequence derived from alignment at L-elsbetiae_contig122:29194..30462+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig122:29194..30462+ >mRNA_L-elsbetiae_contig122.1830.1 ID=mRNA_L-elsbetiae_contig122.1830.1|Name=mRNA_L-elsbetiae_contig122.1830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig122:29194..30462+ (Laminarionema elsbetiae ELsaHSoW15)back to top |