mRNA_L-elsbetiae_contig12196.1826.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: D8LCL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL5_ECTSI) HSP 1 Score: 239 bits (611), Expect = 4.390e-75 Identity = 168/248 (67.74%), Postives = 183/248 (73.79%), Query Frame = 1 Query: 34 MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMNEMSKGSDLLQLQNEIRSNLDDLRVIKAELRGAAQLPSAITRSSHPGTAGAGRSGRSDGSSSTLERGSAAAASTEEALRGRPPLDRLPTAASGATGTRVPETRAMGGDAGGVPGRGAGVEGGXXXXXXXXXXXXXXXXXX---SAGSRSTLPPPRRAVQSVASAGGDRLQRLAMAEIGFAEKELYAPKTGEAPVGGGV 768 MFDVGM E+VVIGGAA+LLLGK DMPLVFRL GRGVGKVSGLVQGGRARMNE+S+GSDLLQLQNEIRSNLDDLRVIKAELRGAA LP ITRSSHPG AG G SG G ++ + + T + P+DR P AA+ A R + G GG G GGXXXXXXXXXXXXXXXX SAG + LPPPRRAV+SVAS GGDRLQRLAMAEIGFAEKELYAPKTG+ GG V Sbjct: 1 MFDVGMAEMVVIGGAAILLLGKRDMPLVFRLAGRGVGKVSGLVQGGRARMNELSQGSDLLQLQNEIRSNLDDLRVIKAELRGAANLPPGITRSSHPGRAGVG-SGTRVGGTNVADPTDPTSVDTRGVVS---PVDRFPVAAAVAVVGRPLRSGMAGSGVGGEAAARVGAIGGXXXXXXXXXXXXXXXXGLGEESAGPGTPLPPPRRAVKSVASPGGDRLQRLAMAEIGFAEKELYAPKTGKHECGGRV 244
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: A0A6H5K8Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Q4_9PHAE) HSP 1 Score: 209 bits (531), Expect = 1.830e-62 Identity = 160/290 (55.17%), Postives = 178/290 (61.38%), Query Frame = 1 Query: 34 MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMNEMSKGSDLLQLQNEIRSNLDDLRVIKAELRGAAQLPSAITRSSHPG--------------------TAGAGR----------------------SGRSDGSSSTLERGSAAAASTEEALRGRPPLDRLPTAASGATGTRVPETRAMGGDAGGVPGRGAGVEGGXXXXXXXXXXXXXXXXXXS---AGSRSTLPPPRRAVQSVASAGGDRLQRLAMAEIGFAEKELYAPKTGEAPVGGGV 768 MFDVGM E++VIGGAA+LLLGK DMPLVFRL GRGVGKVSGLVQGGRARMNE+S+GSDLLQLQNEIRSNLDDLRVIKAELRGAA LP ITRSSHPG TAG G SG+ G ++ + + T + P DR A + A R G GG G GGXXXXXXXXXXXXXX A +++PPPRRAV+SVAS GGDRLQRLAMAEIGFAEK+LYAPKTG+ GG V Sbjct: 1 MFDVGMAEMLVIGGAAILLLGKRDMPLVFRLAGRGVGKVSGLVQGGRARMNELSQGSDLLQLQNEIRSNLDDLRVIKAELRGAANLPPGITRSSHPGSSALRDQHAVSAPPSVGGSGTAGGGTIPPPPYPSFPARDPLPQGGGVGSGKRVGGTNVTDPTDPTSVDTRGVVS---PADRFAVAGAVAGVGRPLRNGMAGSGVGGEAAARVGPVGGXXXXXXXXXXXXXXDKGLGEELARPGTSMPPPRRAVKSVASPGGDRLQRLAMAEIGFAEKDLYAPKTGKHKCGGRV 287
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: A0A1Z5K396_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K396_FISSO) HSP 1 Score: 70.9 bits (172), Expect = 1.320e-10 Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 1 Query: 34 MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMNEMSKGSDLLQLQNEIRSNLDDLRVIKAEL 273 MFD+ E+ VI G +GKHD+P R G VG+ G VQG RAR + + +L QLQNE+RS L +L V+K+EL Sbjct: 1 MFDISWGEMGVIIGVTTFFIGKHDLPKAARYAGTYVGRFVGFVQGARARADRFAANHELKQLQNELRSGLRELDVVKSEL 80
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: A0A1Z5JCC8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCC8_FISSO) HSP 1 Score: 66.2 bits (160), Expect = 5.480e-9 Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 1 Query: 34 MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMNEMSKGSDLLQLQNEIRSNLDDLRVIKAEL 273 MFD+ E+ ++ G +GK D+P R G VG+ G +QG RAR + + +L QLQNE+RS L +L V+K+EL Sbjct: 1 MFDISWGEMGILIGVTTFFIGKQDLPKAARYAGTYVGRFVGFIQGARARADRFAANHELKQLQNELRSGLRELDVVKSEL 80
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: A0A6H5K400_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K400_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 6.960e-9 Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1 Query: 778 DSIPGGADILNEAITDSLLRERYRRMLGVARG 873 DSIPGGADILNEAITDSLL+ERYRRML VARG Sbjct: 13 DSIPGGADILNEAITDSLLQERYRRMLDVARG 44
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: A0A7S2A829_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A829_TRICV) HSP 1 Score: 63.9 bits (154), Expect = 4.690e-8 Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 34 MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMNEMSKGSDLLQLQNEIRSNLDDLRVIKAELRGAA 285 M DV + E+ V+ G +G+ D+P+ R +GR VG+ GL+QG RAR + + ++L LQNE S L +L +++E+ AA Sbjct: 1 MLDVSLAELAVLFGVGAYCIGRKDLPIASRAIGRQVGRFVGLLQGVRARADHFASDNNLRHLQNEFSSGLRELDQVRSEIATAA 84
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: UPI00194E696F (Sec-independent protein translocase protein TatB n=1 Tax=Shimia biformata TaxID=1294299 RepID=UPI00194E696F) HSP 1 Score: 58.9 bits (141), Expect = 1.390e-6 Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 34 MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMNEMSKGSDLLQLQNEIRSNLDDLRVIKAELRGA 282 MFD+G TE++VIG A++++G D+P++FR +GR VGK G+ + + MNE + + + +Q +S D L I ++ + Sbjct: 1 MFDLGWTELLVIGVVALIVVGPKDLPIMFRQVGRFVGKAKGMAREFSSAMNEAADQAGMKDVQQSFKSATDGLNSISNPVKSS 83
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: A0A844AQ98_9RHOB (Sec-independent protein translocase protein TatB n=1 Tax=Tritonibacter aquimaris TaxID=2663379 RepID=A0A844AQ98_9RHOB) HSP 1 Score: 57.0 bits (136), Expect = 2.500e-6 Identity = 28/85 (32.94%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 34 MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMNEMSKGSDLLQLQNEIRSNLDDLRVIKAELRGAAQ 288 MFD+GMTE++VIG A++++G D+P++FR +GR VGK G+ + MN+ + + + + +++ + + + +R AAQ Sbjct: 1 MFDLGMTEMLVIGVVALIVVGPKDLPVLFRNVGRFVGKARGMAREFSRAMNDAADETGVKDMAKGLKTASNPMGAVSDTMRDAAQ 85
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: A0A4U7N747_9RHOB (Sec-independent protein translocase protein TatB n=1 Tax=Pelagicola litoralis TaxID=420403 RepID=A0A4U7N747_9RHOB) HSP 1 Score: 58.2 bits (139), Expect = 2.590e-6 Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 34 MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMNEMSKGSDLLQLQNEIRSNLDDLRVIKAELRGA 282 MFD+G TE++VIG A++++G D+P++FR +GR VGK G+ + + MN+ + S + + N +S D L + ++ A Sbjct: 1 MFDLGWTELLVIGIVALIVVGPKDLPVMFRQVGRFVGKAKGMAREFTSAMNQAADQSGMSDVTNTFKSATDGLNKMSNPMKAA 83
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Match: UPI001EE35368 (Sec-independent protein translocase protein TatB n=1 Tax=Mesobacterium pallidum TaxID=2872037 RepID=UPI001EE35368) HSP 1 Score: 56.6 bits (135), Expect = 3.350e-6 Identity = 29/89 (32.58%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 34 MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMNEMSKGSDLLQLQNEIRSNLDDLRVIKAELRGAAQLPSA 300 MFD+ M E+ V+G A++++G D+P++FR +GR VGK G+ + MN+ ++ S + +Q ++ + L E++GAA+ S+ Sbjct: 1 MFDLSMGEMAVVGVVALIVVGPKDLPVLFRNVGRFVGKAKGMAREFSRAMNDAAEESGMRDVQKTFKTATNPLGSAMDEVKGAAKAASS 89 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12196.1826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12196.1826.1 >prot_L-elsbetiae_contig12196.1826.1 ID=prot_L-elsbetiae_contig12196.1826.1|Name=mRNA_L-elsbetiae_contig12196.1826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=293bp MFDVGMTEVVVIGGAAVLLLGKHDMPLVFRLLGRGVGKVSGLVQGGRARMback to top mRNA from alignment at L-elsbetiae_contig12196:459..3524- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12196.1826.1 ID=mRNA_L-elsbetiae_contig12196.1826.1|Name=mRNA_L-elsbetiae_contig12196.1826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3066bp|location=Sequence derived from alignment at L-elsbetiae_contig12196:459..3524- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12196:459..3524- >mRNA_L-elsbetiae_contig12196.1826.1 ID=mRNA_L-elsbetiae_contig12196.1826.1|Name=mRNA_L-elsbetiae_contig12196.1826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1758bp|location=Sequence derived from alignment at L-elsbetiae_contig12196:459..3524- (Laminarionema elsbetiae ELsaHSoW15)back to top |