mRNA_L-elsbetiae_contig12195.1825.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12195.1825.1
Unique NamemRNA_L-elsbetiae_contig12195.1825.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12195.1825.1 vs. uniprot
Match: A0A6H5JHG7_9PHAE (ANAPC8 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHG7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.660e-30
Identity = 97/201 (48.26%), Postives = 113/201 (56.22%), Query Frame = 1 
Query:    1 MQFLCHYYKDMGDYTRASKMANGLLDYTGTSREEAHAVLREIKSIMETRHCQSASASFL-----ADERGNDTAVSAHGGGRPLFTPRVGTTAGISQHNSIAAAAA------------ATPGAARGSREPFPEDRPSVSRRGFAGGGDGAGL------------GGGGYRLMDNSGGASFMA-RSPGNMSVAMSLGSEDSGD 513
            M FLC YYK+ GDYTRASKMANGLLD+TGTSRE A AVLREI+SIMETR  Q+A +S L     A+   ND ++   G GRPLFTPR  T  G S H+   A  +            +  GA R +   FP   P    R  +G   G G             G  GYRLM NSGG + +A RSP +MSVAMSLGS D  D
Sbjct:  607 MHFLCLYYKNRGDYTRASKMANGLLDHTGTSREAALAVLREIRSIMETRQHQAAESSALPQPHNANNSHNDVSLDG-GSGRPLFTPRAAT--GASHHDGSGAGGSQLFIANNSGVGGSVRGAIRAAGGTFPTPTPRRPGRVCSGVSPGTGXXXXXXXXXXXXSGTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDD 804
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12195.1825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHG7_9PHAE2.660e-3048.26ANAPC8 domain-containing protein n=3 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12195contigL-elsbetiae_contig12195:2184..3062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue4.6e-29
Seed eggNOG ortholog2880.D7FLS8
Preferred nameAPC8
KEGG koko:K03355
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0031347,GO:0048583,GO:0050789,GO:0065007,GO:0080134
EggNOG free text desc.regulation of mitotic metaphase/anaphase transition
EggNOG OGsCOG0013@1,KOG1155@2759
Ec32 ortholog descriptionCdc23
Ec32 orthologEc-00_007980.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_002170.1
Exons2
Model size627
Cds size627
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815418.8943264-CDS-L-elsbetiae_contig12195:2183..27201622815418.8943264-CDS-L-elsbetiae_contig12195:2183..2720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12195 2184..2720 -
1691682888.422645-CDS-L-elsbetiae_contig12195:2183..27201691682888.422645-CDS-L-elsbetiae_contig12195:2183..2720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12195 2184..2720 -
1622815418.905376-CDS-L-elsbetiae_contig12195:2972..30621622815418.905376-CDS-L-elsbetiae_contig12195:2972..3062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12195 2973..3062 -
1691682888.43499-CDS-L-elsbetiae_contig12195:2972..30621691682888.43499-CDS-L-elsbetiae_contig12195:2972..3062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12195 2973..3062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12195.1825.1prot_L-elsbetiae_contig12195.1825.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12195 2184..3062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12195.1825.1

>prot_L-elsbetiae_contig12195.1825.1 ID=prot_L-elsbetiae_contig12195.1825.1|Name=mRNA_L-elsbetiae_contig12195.1825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
MQFLCHYYKDMGDYTRASKMANGLLDYTGTSREEAHAVLREIKSIMETRH
CQSASASFLADERGNDTAVSAHGGGRPLFTPRVGTTAGISQHNSIAAAAA
ATPGAARGSREPFPEDRPSVSRRGFAGGGDGAGLGGGGYRLMDNSGGASF
MARSPGNMSVAMSLGSEDSGDADTTPRGGRGQGGAAEGGDAGSPDGGGEG
SFSDILSP*
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mRNA from alignment at L-elsbetiae_contig12195:2184..3062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12195.1825.1 ID=mRNA_L-elsbetiae_contig12195.1825.1|Name=mRNA_L-elsbetiae_contig12195.1825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=879bp|location=Sequence derived from alignment at L-elsbetiae_contig12195:2184..3062- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGTTCCTGTGCCACTACTACAAGGACATGGGGGACTACACCAGGGC
CTCCAAGATGGCGAATGGTCTACTTGACTACACGGGGACGGTACGGTGTT
TGATTTGGGAGGAGGGACGGAATGAATCGGTGAACCAGGACATCTGGGTG
TGGGCTTCTCCCGTAAGTGAAGCCCAGCCACTGCAAACGCTCATTGCGGA
TATACCAAGGTGGCAGGAATATCACCCCCTCTGCCTAGGCGACTTAAAGA
TCCGTGTTCGCATAATGACCTTTTTGCAAAGCGTTCGCCAACCAAACATC
CCCTCCCACACCGCTCGTGCCCTCCCGCCATCATCCCAAAAGTCGAGAGA
AGAGGCTCACGCGGTTCTGAGGGAGATCAAGAGCATCATGGAGACCCGTC
ATTGCCAGTCCGCGAGCGCGTCTTTCTTGGCCGACGAACGCGGCAACGAC
ACGGCCGTCTCGGCTCACGGCGGCGGCCGCCCCCTGTTTACCCCCCGCGT
CGGCACCACGGCGGGCATTTCTCAGCACAACAGCATCGCCGCCGCCGCCG
CTGCTACTCCCGGTGCGGCGAGAGGATCTCGGGAGCCCTTCCCGGAAGAC
CGACCGTCTGTCAGCCGCAGGGGCTTTGCCGGCGGCGGCGATGGTGCGGG
CTTGGGGGGGGGGGGGTACCGGTTAATGGACAACAGTGGCGGGGCGTCGT
TCATGGCCAGGTCCCCCGGGAACATGAGTGTTGCCATGAGCTTGGGGTCG
GAGGACTCGGGGGACGCTGACACGACCCCGCGCGGCGGTCGCGGCCAGGG
GGGCGCGGCGGAAGGGGGTGACGCAGGGTCACCAGACGGCGGGGGGGAGG
GGTCGTTTAGTGATATATTGTCACCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12195:2184..3062-

>mRNA_L-elsbetiae_contig12195.1825.1 ID=mRNA_L-elsbetiae_contig12195.1825.1|Name=mRNA_L-elsbetiae_contig12195.1825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig12195:2184..3062- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGTTCCTGTGCCACTACTACAAGGACATGGGGGACTACACCAGGGC
CTCCAAGATGGCGAATGGTCTACTTGACTACACGGGGACGATGCAGTTCC
TGTGCCACTACTACAAGGACATGGGGGACTACACCAGGGCCTCCAAGATG
GCGAATGGTCTACTTGACTACACGGGGACGTCGAGAGAAGAGGCTCACGC
GGTTCTGAGGGAGATCAAGAGCATCATGGAGACCCGTCATTGCCAGTCCG
CGAGCGCGTCTTTCTTGGCCGACGAACGCGGCAACGACACGGCCGTCTCG
GCTCACGGCGGCGGCCGCCCCCTGTTTACCCCCCGCGTCGGCACCACGGC
GGGCATTTCTCAGCACAACAGCATCGCCGCCGCCGCCGCTGCTACTCCCG
GTGCGGCGAGAGGATCTCGGGAGCCCTTCCCGGAAGACCGACCGTCTGTC
AGCCGCAGGGGCTTTGCCGGCGGCGGCGATGGTGCGGGCTTGGGGGGGGG
GGGGTACCGGTTAATGGACAACAGTGGCGGGGCGTCGTTCATGGCCAGGT
CCCCCGGGAACATGAGTGTTGCCATGAGCTTGGGGTCGGAGGACTCGGGG
GACGCTGACACGACCCCGCGCGGCGGTCGCGGCCAGGGGGGCGCGGCGGA
AGGGGGTGACGCAGGGTCACCAGACGGCGGGGGGGAGGGGTCGTTTAGTG
ATATATTGTCACCGTGATCGAGAGAAGAGGCTCACGCGGTTCTGAGGGAG
ATCAAGAGCATCATGGAGACCCGTCATTGCCAGTCCGCGAGCGCGTCTTT
CTTGGCCGACGAACGCGGCAACGACACGGCCGTCTCGGCTCACGGCGGCG
GCCGCCCCCTGTTTACCCCCCGCGTCGGCACCACGGCGGGCATTTCTCAG
CACAACAGCATCGCCGCCGCCGCCGCTGCTACTCCCGGTGCGGCGAGAGG
ATCTCGGGAGCCCTTCCCGGAAGACCGACCGTCTGTCAGCCGCAGGGGCT
TTGCCGGCGGCGGCGATGGTGCGGGCTTGGGGGGGGGGGGGTACCGGTTA
ATGGACAACAGTGGCGGGGCGTCGTTCATGGCCAGGTCCCCCGGGAACAT
GAGTGTTGCCATGAGCTTGGGGTCGGAGGACTCGGGGGACGCTGACACGA
CCCCGCGCGGCGGTCGCGGCCAGGGGGGCGCGGCGGAAGGGGGTGACGCA
GGGTCACCAGACGGCGGGGGGGAGGGGTCGTTTAGTGATATATTGTCACC
GTGA
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