mRNA_L-elsbetiae_contig12193.1824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12193.1824.1
Unique NamemRNA_L-elsbetiae_contig12193.1824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12193.1824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12193contigL-elsbetiae_contig12193:1932..2258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size329
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815418.8647003-CDS-L-elsbetiae_contig12193:1931..22581622815418.8647003-CDS-L-elsbetiae_contig12193:1931..2258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12193 1932..2258 +
1691682888.4126968-CDS-L-elsbetiae_contig12193:1931..22581691682888.4126968-CDS-L-elsbetiae_contig12193:1931..2258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12193 1932..2258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12193.1824.1prot_L-elsbetiae_contig12193.1824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12193 1932..2258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12193.1824.1

>prot_L-elsbetiae_contig12193.1824.1 ID=prot_L-elsbetiae_contig12193.1824.1|Name=mRNA_L-elsbetiae_contig12193.1824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
CVGCITTRARYPHSVPSLLKSMLFAIFCALSGVDGMYVHSSFHSQFKYLN
ATCRYLISRLNIISPLIQHNSSTQASVLFKSVTLYNALDSLTINGGALAP
KTLYLHTP*
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mRNA from alignment at L-elsbetiae_contig12193:1932..2258+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12193.1824.1 ID=mRNA_L-elsbetiae_contig12193.1824.1|Name=mRNA_L-elsbetiae_contig12193.1824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=327bp|location=Sequence derived from alignment at L-elsbetiae_contig12193:1932..2258+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGTTGGGTGCATTACTACTCGCGCCCGCTATCCGCACAGTGTTCCCTC
TCTCCTCAAGTCCATGTTGTTCGCCATTTTTTGTGCGTTATCTGGGGTTG
ATGGTATGTACGTACACAGTAGTTTTCACTCCCAATTTAAATATTTAAAT
GCAACATGTAGGTATCTTATATCTAGACTAAACATCATTTCCCCACTCAT
ACAACACAACTCCTCCACTCAGGCATCCGTCCTTTTCAAAAGCGTTACAC
TCTACAATGCCTTGGACTCGCTCACAATAAACGGGGGCGCTCTAGCGCCC
AAGACCTTGTACTTACATACACCCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12193:1932..2258+

>mRNA_L-elsbetiae_contig12193.1824.1 ID=mRNA_L-elsbetiae_contig12193.1824.1|Name=mRNA_L-elsbetiae_contig12193.1824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig12193:1932..2258+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGTTGGGTGCATTACTACTCGCGCCCGCTATCCGCACAGTGTTCCCTC
TCTCCTCAAGTCCATGTTGTTCGCCATTTTTTGTGCGTTATCTGGGGTTG
ATGGTATGTACGTACACAGTAGTTTTCACTCCCAATTTAAATATTTAAAT
GCAACATGTAGGTATCTTATATCTAGACTAAACATCATTTCCCCACTCAT
ACAACACAACTCCTCCACTCAGGCATCCGTCCTTTTCAAAAGCGTTACAC
TCTACAATGCCTTGGACTCGCTCACAATAAACGGGGGCGCTCTAGCGCCC
AAGACCTTGTACTTACATACACCCTAATGTGTTGGGTGCATTACTACTCG
CGCCCGCTATCCGCACAGTGTTCCCTCTCTCCTCAAGTCCATGTTGTTCG
CCATTTTTTGTGCGTTATCTGGGGTTGATGGTATGTACGTACACAGTAGT
TTTCACTCCCAATTTAAATATTTAAATGCAACATGTAGGTATCTTATATC
TAGACTAAACATCATTTCCCCACTCATACAACACAACTCCTCCACTCAGG
CATCCGTCCTTTTCAAAAGCGTTACACTCTACAATGCCTTGGACTCGCTC
ACAATAAACGGGGGCGCTCTAGCGCCCAAGACCTTGTACTTACATACACC
CTAA
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