mRNA_L-elsbetiae_contig1219.1822.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1219.1822.1
Unique NamemRNA_L-elsbetiae_contig1219.1822.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1219.1822.1 vs. uniprot
Match: D7FM34_ECTSI (SHNi-TPR domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM34_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.040e-49
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = -2 
Query:    4 MAAETNT--VAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGNELSPALAPLYYEYGNSLLYNAEESGEIFGGAITDAEEKKRAMAIVEAKING 306
            MA E++   VAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSG+E+SP+LAPLYYEYGNSLLYNAEESG +FG AITDAE+KKRAMAIVEA+ING
Sbjct:    1 MATESSNSAVAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQING 103
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BLAST of mRNA_L-elsbetiae_contig1219.1822.1 vs. uniprot
Match: A0A5D6XWQ8_9STRA (SHNi-TPR domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWQ8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.320e-9
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = -2 
Query:   19 TLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGNELSPALAPLYYEYGNSLLYNAEESGEIFGGAITDAEEKKRAMAIVE 276
            T +DP++  G  L+ + RLEEAV  +  LL T ++  + ++ S A+AP+YY+YG+S+L  AE +  +FGG++   E    A A  E
Sbjct:   29 TTSDPRFTRGLTLLKEKRLEEAVVVYEDLLRTMIETENQSD-SLAVAPVYYQYGHSMLLLAEATASVFGGSVAPPEAGSDADAXXE 113
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BLAST of mRNA_L-elsbetiae_contig1219.1822.1 vs. uniprot
Match: A0A662WM16_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WM16_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.180e-8
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = -2 
Query:   52 SMAAETNTVAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGNELSPALAPLYYEYGNSLLYNAEESGEIFGGAITDA 309
            SM  E N    TL DP+++ G  L+   RLEEAV  F  LL T  +     + S A+AP+YY+YG+SLL  AE +  +FGGA+  A
Sbjct:  719 SMEQELNK---TLTDPRFERGLALVKAKRLEEAVVAFEDLLRTMCETEQLGD-SLAVAPVYYQYGHSLLLLAEATASLFGGAVESA 800
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BLAST of mRNA_L-elsbetiae_contig1219.1822.1 vs. uniprot
Match: A0A2P6U3T4_CHLSO (TPR domain containing n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3T4_CHLSO)

HSP 1 Score: 60.1 bits (144), Expect = 2.110e-7
Identity = 30/89 (33.71%), Postives = 51/89 (57.30%), Query Frame = -2 
Query:    4 ADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGNELSPALAPLYYEYGNSLLYNAEESGEIFGGAITDAEEKKRAMAIVEAKING 270
            A+ +++ G + I    LE+AV  F+ +L+ R +     EL+P  A  YY YG +LLY A++S ++FG  + +A +   A +  + K NG
Sbjct:   23 AERKFERGIQCIRTNDLEQAVQLFAEVLQVRTEHFG--ELAPECASAYYRYGAALLYQAQDSADVFGAGVREAADDDPAASEADDKENG 109
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BLAST of mRNA_L-elsbetiae_contig1219.1822.1 vs. uniprot
Match: E1ZKN4_CHLVA (SHNi-TPR domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZKN4_CHLVA)

HSP 1 Score: 59.7 bits (143), Expect = 2.830e-7
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = -2 
Query:   43 AATLA--DPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGNELSPALAPLYYEYGNSLLYNAEESGEIFGG-AITDAEEK 282
            AATLA  D +++ G + I    +E AV  FS +LE R +     EL+P  A  YY YG +LLY A++SG++FG   + D EE+
Sbjct:   16 AATLAEADAKFERGIQCIRSNDIEAAVALFSEVLEVRTRHYG--ELAPECASAYYRYGAALLYQAQDSGDVFGANVVKDGEEE 96
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BLAST of mRNA_L-elsbetiae_contig1219.1822.1 vs. uniprot
Match: A0A2P6VJ67_9CHLO (TPR domain containing n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VJ67_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 5.330e-7
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = -2 
Query:   61 ADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGNELSPALAPLYYEYGNSLLYNAEESGEIFGGAI 270
            AD +++ G + I    L+ AV  F+ +L+ R +     EL+P  AP Y+ YG++LLY A++SG++FGG +
Sbjct:   24 ADAKFERGIQCIRTNDLDTAVKLFAEVLKVRAEHYG--ELAPECAPAYFRYGSTLLYQAQDSGDVFGGGV 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1219.1822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FM34_ECTSI1.040e-4986.41SHNi-TPR domain-containing protein n=2 Tax=Ectocar... [more]
A0A5D6XWQ8_9STRA5.320e-938.37SHNi-TPR domain-containing protein n=1 Tax=Pythium... [more]
A0A662WM16_9STRA1.180e-844.19Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A2P6U3T4_CHLSO2.110e-733.71TPR domain containing n=1 Tax=Chlorella sorokinian... [more]
E1ZKN4_CHLVA2.830e-742.17SHNi-TPR domain-containing protein n=1 Tax=Chlorel... [more]
A0A2P6VJ67_9CHLO5.330e-738.57TPR domain containing n=1 Tax=Micractinium conduct... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1219contigL-elsbetiae_contig1219:9794..10328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size536
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815418.4794033-CDS-L-elsbetiae_contig1219:9793..101291622815418.4794033-CDS-L-elsbetiae_contig1219:9793..10129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1219 9794..10129 +
1691682888.1839714-CDS-L-elsbetiae_contig1219:9793..101291691682888.1839714-CDS-L-elsbetiae_contig1219:9793..10129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1219 9794..10129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815418.4896557-UTR-L-elsbetiae_contig1219:10129..103281622815418.4896557-UTR-L-elsbetiae_contig1219:10129..10328Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1219 10130..10328 +
1691682888.1924515-UTR-L-elsbetiae_contig1219:10129..103281691682888.1924515-UTR-L-elsbetiae_contig1219:10129..10328Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1219 10130..10328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1219.1822.1prot_L-elsbetiae_contig1219.1822.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1219 9794..10129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1219.1822.1

>prot_L-elsbetiae_contig1219.1822.1 ID=prot_L-elsbetiae_contig1219.1822.1|Name=mRNA_L-elsbetiae_contig1219.1822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
LAVDFSLDDSHGSLLFLGVGDGAPEDLAGLLGVVEEGVAVLVVEGSQRRA
QLVAAQHLDSGLEEAAEEVDGLFQAAVVDELAPSLVLGVCERRRHGVGFC
RHALTAAETIF*
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mRNA from alignment at L-elsbetiae_contig1219:9794..10328+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1219.1822.1 ID=mRNA_L-elsbetiae_contig1219.1822.1|Name=mRNA_L-elsbetiae_contig1219.1822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=535bp|location=Sequence derived from alignment at L-elsbetiae_contig1219:9794..10328+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGCCGTTGATTTTAGCCTCGACGATAGCCATGGCTCTCTTCTTTTCCT
CGGCGTCGGTGATGGCGCCCCCGAAGATCTCGCCGGACTCCTCGGCGTTG
TAGAGGAGGGAGTTGCCGTACTCGTAGTAGAGGGGAGCCAGCGCCGGGCT
CAACTCGTTGCCGCTCAGCACCTGGACTCTGGTCTCGAGGAGGCCGCTGA
AGAAGTTGACGGCCTCTTCCAGGCGGCCGTCGTCGATGAGCTTGCGCCCA
GCCTTGTACTGGGGGTCTGCGAGCGTCGCCGCCACGGTGTTGGTTTCTGC
CGCCATGCTCTCACTGCTGCAGAAACGATTTTCTGAACCTTCGACTCGAC
TCGAGAAGCGTATCTCACACACCTCGGACTAAAATATCCTCCGTGGAGTT
GTCGGCCGTTCAGTAGATCAGAAGGGAGAAGAAGAGAGAGGGATTTTTCG
ATGTGTACTGGCAAGGGGCGAAGCCGCGATAGACCTTGGCAACGATGGAA
AACGCAAATCATGAAATGCCCCCTCAATGTTTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1219:9794..10328+

>mRNA_L-elsbetiae_contig1219.1822.1 ID=mRNA_L-elsbetiae_contig1219.1822.1|Name=mRNA_L-elsbetiae_contig1219.1822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1219:9794..10328+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGCCGTTGATTTTAGCCTCGACGATAGCCATGGCTCTCTTCTTTTCCT
CGGCGTCGGTGATGGCGCCCCCGAAGATCTCGCCGGACTCCTCGGCGTTG
TAGAGGAGGGAGTTGCCGTACTCGTAGTAGAGGGGAGCCAGCGCCGGGCT
CAACTCGTTGCCGCTCAGCACCTGGACTCTGGTCTCGAGGAGGCCGCTGA
AGAAGTTGACGGCCTCTTCCAGGCGGCCGTCGTCGATGAGCTTGCGCCCA
GCCTTGTACTGGGGGTCTGCGAGCGTCGCCGCCACGGTGTTGGTTTCTGC
CGCCATGCTCTCACTGCTGCAGAAACGATTTTCTGACTGGCCGTTGATTT
TAGCCTCGACGATAGCCATGGCTCTCTTCTTTTCCTCGGCGTCGGTGATG
GCGCCCCCGAAGATCTCGCCGGACTCCTCGGCGTTGTAGAGGAGGGAGTT
GCCGTACTCGTAGTAGAGGGGAGCCAGCGCCGGGCTCAACTCGTTGCCGC
TCAGCACCTGGACTCTGGTCTCGAGGAGGCCGCTGAAGAAGTTGACGGCC
TCTTCCAGGCGGCCGTCGTCGATGAGCTTGCGCCCAGCCTTGTACTGGGG
GTCTGCGAGCGTCGCCGCCACGGTGTTGGTTTCTGCCGCCATGCTCTCAC
TGCTGCAGAAACGATTTTCTGA
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