mRNA_L-elsbetiae_contig12182.1815.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12182.1815.1
Unique NamemRNA_L-elsbetiae_contig12182.1815.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12182.1815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12182contigL-elsbetiae_contig12182:1071..2468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815418.1539123-CDS-L-elsbetiae_contig12182:1070..12511622815418.1539123-CDS-L-elsbetiae_contig12182:1070..1251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12182 1071..1251 +
1691682888.0260797-CDS-L-elsbetiae_contig12182:1070..12511691682888.0260797-CDS-L-elsbetiae_contig12182:1070..1251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12182 1071..1251 +
1622815418.1640337-CDS-L-elsbetiae_contig12182:2390..24671622815418.1640337-CDS-L-elsbetiae_contig12182:2390..2467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12182 2391..2467 +
1691682888.0364509-CDS-L-elsbetiae_contig12182:2390..24671691682888.0364509-CDS-L-elsbetiae_contig12182:2390..2467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12182 2391..2467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12182.1815.1prot_L-elsbetiae_contig12182.1815.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12182 1071..2467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12182.1815.1

>prot_L-elsbetiae_contig12182.1815.1 ID=prot_L-elsbetiae_contig12182.1815.1|Name=mRNA_L-elsbetiae_contig12182.1815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
FVAHAQLGPRTWEASPKLPTSRYTYQALKSGRGSVCACAAPGGRRPRSPP
PRRGPHGATKTCPAATRPAASRRSSWTLPERGRRRR
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mRNA from alignment at L-elsbetiae_contig12182:1071..2468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12182.1815.1 ID=mRNA_L-elsbetiae_contig12182.1815.1|Name=mRNA_L-elsbetiae_contig12182.1815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig12182:1071..2468+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGTAGCACACGCACAACTGGGGCCCCGCACCTGGGAAGCGAGCCCCAA
GCTACCGACGTCAAGATATACGTATCAGGCTTTGAAAAGTGGCCGAGGCT
CGGTCTGCGCATGCGCGGCCCCCGGAGGGCGCCGGCCGCGTAGCCCCCCC
CCCCGGAGGGGGCCTCACGGAGCGACGAAGAGTGAGCTTTTCCTTTTGAA
ATACCCTTCAAAATTACTCAATAATTGGCGTAATTTTGAGGTGGTGATCA
TACCGTGATAAATTACTAGTTAGGTGTGTTGCAGTCGTGTTGTCCATAGC
ACGTTTTGTTTTATAAAATGGGTTTCATGGGTATTTAGTATTACTTCGTA
GCAGTACTTGTTCAAGCACAGCGACAACTAAAATTTTTCACAAATTTCTG
ACTACCTTCGGGCACCAGAATCCCTCCAAAACCAAGTCCCGAAGTCCCAA
ACCGCTACGTAGTTATTTACAATGCTTCGCCGTCACCGCTCGTCTCTGGC
AAAAGCACTATCTTGCGAGTACAATAGTCTATGGCTGCTTCCTTTCTTCG
GAGCGATTTTGTTTACTTCAGACGAAGCCCTTTAGGCCCGTTCCCTTTGT
CGAAAATAACGGCAGCTGCCTCGAGAATTTTGTCCTCCTTGGTGAGATCC
ACGTCTTGCTTTTGGTGCAACAAAGACAAGACCCCAATTTTTTTTCTCGC
CTTCGGCGAGAGGCCGCAGAAAACAATTTCGCCTGCGGCGAAAAATCTGC
GGCCTAATTTTTTTCCCTGCGGCAAACCGCAAATTGAACATTCAACAACC
TGCGCTGCGCGCAGATTTACCCTAGAAACCTGCGCTGCCGCAACTCCGCA
GGTGACTTTTCAAAGCCTGATACGTATGAAAAGAAAAAAGTCGTCAGGCC
TTAATGTGTCTAAAAGCGAGGACTCCCGCGCGAATCGTCCCCGTCCGCCG
CCTCGCCTCGTTTTCCGTCAACGCGTGATCCGCCAGCTTTTCGGCTCTTC
GCATGAACGATGCGAGAACGTCACCACAGGCACTCTCTCACAGTCGACCA
GCTATATACTAACTGCTTGTAGTCGACTTCTGTTCCATGATTTGTTTTGT
TCCTTCACTCGAACGCGACTATGTAAGTGACAAGTGGCAGCCACTTTGCA
AGAACGGCGCGTCCATGGGTACGCTCCCGGCCACGCATGCGCAGGCACCA
CGTTCGTGCGTCTCCCCCCCCCCCCCCCCCCGTGTGTGTATGCCACCGTA
CATCCGTTGCCCGTGCCGTGACGTTACCTCACTTTCCTCCCCCGCTCCGC
GCCGGTTCCTTTTTCAGCAGCGTGCCCGGCGGCGACACGGCCGGCGGCCT
CGCGGAGGAGCTCGTGGACGCTGCCCGAGAGGGGGAGAAGGAGAAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12182:1071..2468+

>mRNA_L-elsbetiae_contig12182.1815.1 ID=mRNA_L-elsbetiae_contig12182.1815.1|Name=mRNA_L-elsbetiae_contig12182.1815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig12182:1071..2468+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGTAGCACACGCACAACTGGGGCCCCGCACCTGGGAAGCGAGCCCCAA
GCTACCGACGTCAAGATATACGTATCAGGCTTTGAAAAGTGGCCGAGGCT
CGGTCTGCGCATGCGCGGCCCCCGGAGGGCGCCGGCCGCGTAGCCCCCCC
CCCCGGAGGGGGCCTCACGGAGCGACGAAGATTTGTAGCACACGCACAAC
TGGGGCCCCGCACCTGGGAAGCGAGCCCCAAGCTACCGACGTCAAGATAT
ACGTATCAGGCTTTGAAAAGTGGCCGAGGCTCGGTCTGCGCATGCGCGGC
CCCCGGAGGGCGCCGGCCGCGTAGCCCCCCCCCCCGGAGGGGGCCTCACG
GAGCGACGAAGACGTGCCCGGCGGCGACACGGCCGGCGGCCTCGCGGAGG
AGCTCGTGGACGCTGCCCGAGAGGGGGAGAAGGAGAAGGCGTGCCCGGCG
GCGACACGGCCGGCGGCCTCGCGGAGGAGCTCGTGGACGCTGCCCGAGAG
GGGGAGAAGGAGAAGG
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