mRNA_L-elsbetiae_contig12164.1802.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12164.1802.1
Unique NamemRNA_L-elsbetiae_contig12164.1802.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: D8LU43_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU43_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.470e-44
Identity = 73/84 (86.90%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:    1 ASDKPWTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQPRMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            A +KPWTDP+GLLSLSEPQ+ KL+GW RPS+VMPG+PRMI NVNPYSI+QDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ
Sbjct:  283 AFNKPWTDPDGLLSLSEPQREKLVGWSRPSQVMPGEPRMINNVNPYSIKQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 366
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BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: D8LU45_ECTSI (Similar to calpain 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU45_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.160e-31
Identity = 57/82 (69.51%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    7 DKPWTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQPRMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            DKPW DP+G L LS   +  L GW+RPSEVMPG P MIGN++P+SIRQ+L+TD S VASLC+ASA+ERRF KQLITGII+PQ
Sbjct:  295 DKPWEDPDGRLRLSGRLRVNLTGWKRPSEVMPGTPHMIGNLDPFSIRQNLVTDSSLVASLCVASAYERRFDKQLITGIIFPQ 376
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BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: A0A7S2R4L7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4L7_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.110e-25
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   10 KPWTDPEGLLSLSEPQQTKLLGWRRPSEVMP----GQPRMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            +PW DPEGLL LS  Q+  L  W RPSE +P     +P MI  V+P+ I QDL+TDCSFVASLCI +AFE++F +QLITGIIYPQ
Sbjct:   94 EPWVDPEGLLPLSAKQRKHLGRWARPSEFVPFFSSSKPAMIQAVSPFCITQDLVTDCSFVASLCITAAFEKKFRRQLITGIIYPQ 178
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BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: A0A024TNA2_9STRA (Calpain catalytic domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNA2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.330e-24
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:   16 WTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQPRMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            +TDP+GLLS+S  Q  KL  W RPSE     PRM+  ++PY I QD++TDCSFVASLCI +A+E RFHKQLIT II+PQ
Sbjct:  273 FTDPDGLLSMSSKQLEKLAKWVRPSEYGTAPPRMVSQISPYVIVQDVVTDCSFVASLCITAAYEMRFHKQLITNIIFPQ 351
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BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: A0A3L6US42_9STRA (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6US42_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.560e-24
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 ASDKPWTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQPRMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            A+D  + DP+G L++S  Q  KL  W RPS+     PRM+  ++PY+I QD++TDCSFVASLCI +A+E RFHKQLIT IIYPQ
Sbjct:  287 AADSLFVDPDGFLAMSPKQLDKLAKWSRPSDYGTNAPRMVSQISPYAIVQDVVTDCSFVASLCITAAYELRFHKQLITNIIYPQ 370
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BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: A0A397CL74_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CL74_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.740e-24
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 ASDKPWTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQPRMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            A+D  + DP+G L++S  Q  KL  W RPS+     PRM+  ++P++I QD++TDCSFVASLCI +A+E RFHKQLIT IIYPQ
Sbjct:  290 AADSLFVDPDGFLAMSPKQLDKLAKWSRPSDYGTNAPRMVSQISPFAIVQDVVTDCSFVASLCITAAYELRFHKQLITNIIYPQ 373
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BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: W4G3V3_9STRA (Calpain catalytic domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3V3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.820e-24
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 ASDKPWTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQPRMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            A+D  + DP+G L++S  Q  KL  W RPS+     PRM+  ++PY+I QD++TDCSFVASLCI +A+E RFHKQLIT IIYPQ
Sbjct:  289 AADSLFVDPDGFLAMSPKQLDKLAKWSRPSDYGTNTPRMVSQISPYAIVQDVVTDCSFVASLCITAAYELRFHKQLITNIIYPQ 372
[Close]
BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: A0A4D9DDQ8_9STRA (Calpain catalytic domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDQ8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.630e-24
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:   10 KPWTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQP------RMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            KP+ DP+GLLSLS  Q  +L GW+RP E + G+P      RMIG+V P+SI Q+ ++DCSFVASLCI +AFE+RF  QLIT I+YPQ
Sbjct:  274 KPFADPDGLLSLSPKQAARLGGWKRPHEFIRGRPGSDQGPRMIGSVTPHSIMQEQVSDCSFVASLCICAAFEQRFQTQLITKILYPQ 360
[Close]
BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: A0A397ADJ5_9STRA (Calpain catalytic domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ADJ5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.790e-24
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 ASDKPWTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQPRMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            A+D  + DP+G L++S  Q  KL  W RPS+     PRM+  ++P++I QD++TDCSFVASLCI +A+E RFHKQLIT IIYPQ
Sbjct:  278 AADSLFVDPDGFLAMSPKQLDKLAKWSRPSDYGTNAPRMVSQISPFAIVQDVVTDCSFVASLCITAAYELRFHKQLITNIIYPQ 361
[Close]
BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Match: A0A7S1C5X4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5X4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.520e-23
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   10 KPWTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQPRMIGNVNPYSIRQDLITDCSFVASLCIASAFERRFHKQLITGIIYPQ 252
            KP+ DP+GLL+LS  QQ +   W+RPSE M   P+MI  V+ YSI Q+L++DCSFV+SL IA+A+ERR HK+LIT IIYPQ
Sbjct:   55 KPFVDPDGLLALSPKQQARFAAWKRPSEFMTA-PKMIQIVSAYSITQELVSDCSFVSSLIIAAAYERRHHKRLITSIIYPQ 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12164.1802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU43_ECTSI9.470e-4486.90Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LU45_ECTSI1.160e-3169.51Similar to calpain 7 n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S2R4L7_9STRA7.110e-2561.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024TNA2_9STRA1.330e-2462.03Calpain catalytic domain-containing protein n=3 Ta... [more]
A0A3L6US42_9STRA1.560e-2457.14Calpain catalytic domain-containing protein (Fragm... [more]
A0A397CL74_9STRA1.740e-2455.95Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
W4G3V3_9STRA1.820e-2457.14Calpain catalytic domain-containing protein n=3 Ta... [more]
A0A4D9DDQ8_9STRA4.630e-2458.62Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A397ADJ5_9STRA5.790e-2455.95Calpain catalytic domain-containing protein (Fragm... [more]
A0A7S1C5X4_9STRA5.520e-2360.49Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12164contigL-elsbetiae_contig12164:4407..5085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue9.2e-37
Seed eggNOG ortholog2880.D8LU43
Preferred nameCAPN7
KEGG koko:K08576
Hectar predicted targeting categoryother localisation
GOsGO:0000815,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0006082,GO:0006508,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009058,GO:0009268,GO:0009308,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010008,GO:0010565,GO:0010632,GO:0010634,GO:0012505,GO:0016020,GO:0016053,GO:0016787,GO:0016999,GO:0017000,GO:0017144,GO:0018130,GO:0019222,GO:0019538,GO:0019748,GO:0019752,GO:0019904,GO:0030334,GO:0030335,GO:0030653,GO:0030654,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031982,GO:0032787,GO:0032879,GO:0032991,GO:0033238,GO:0033240,GO:0033244,GO:0033246,GO:0034248,GO:0034250,GO:0034641,GO:0036452,GO:0040012,GO:0040017,GO:0042316,GO:0042318,GO:0042762,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043455,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051176,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051716,GO:0062012,GO:0062013,GO:0065007,GO:0070011,GO:0071214,GO:0071467,GO:0071704,GO:0072330,GO:0072338,GO:0072339,GO:0090541,GO:0097264,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0104004,GO:0140096,GO:1900196,GO:1900198,GO:1900376,GO:1900378,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:2000145,GO:2000147
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815417.0945253-CDS-L-elsbetiae_contig12164:4406..44801622815417.0945253-CDS-L-elsbetiae_contig12164:4406..4480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12164 4407..4480 +
1691682887.451151-CDS-L-elsbetiae_contig12164:4406..44801691682887.451151-CDS-L-elsbetiae_contig12164:4406..4480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12164 4407..4480 +
1622815417.1043622-CDS-L-elsbetiae_contig12164:4907..50851622815417.1043622-CDS-L-elsbetiae_contig12164:4907..5085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12164 4908..5085 +
1691682887.4618034-CDS-L-elsbetiae_contig12164:4907..50851691682887.4618034-CDS-L-elsbetiae_contig12164:4907..5085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12164 4908..5085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12164.1802.1prot_L-elsbetiae_contig12164.1802.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12164 4407..5085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12164.1802.1

>prot_L-elsbetiae_contig12164.1802.1 ID=prot_L-elsbetiae_contig12164.1802.1|Name=mRNA_L-elsbetiae_contig12164.1802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
ASDKPWTDPEGLLSLSEPQQTKLLGWRRPSEVMPGQPRMIGNVNPYSIRQ
DLITDCSFVASLCIASAFERRFHKQLITGIIYPQ
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mRNA from alignment at L-elsbetiae_contig12164:4407..5085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12164.1802.1 ID=mRNA_L-elsbetiae_contig12164.1802.1|Name=mRNA_L-elsbetiae_contig12164.1802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=679bp|location=Sequence derived from alignment at L-elsbetiae_contig12164:4407..5085+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTCGGACAAACCGTGGACAGATCCGGAAGGCCTTCTGTCCCTGTCGGA
GCCTCAGCAGACTAAGCTTTTGGGGTGAGAAAGAACGAACCGCCTTCGCA
AAAGAAATTAGTTTTTATCTAGGAAATAGAGACAGGGGCTCCGTAACCCT
ACAACCCTAACTCTAGCCCCTAACCTCAAACTCAAAACCCCCTTTTCCCG
ATTCCTTATATACTTTAATCTCATACTTCGTATAGTTATAAGCTTGAGAC
AAACTCTTGCGCGAAGGCTATACTGGAAAACACGCCGCCTGCTGGAATTT
TCCTCCATGACTTGCCTCTCGATTTTGCAGCGTGCGACACGGCGAGCAGC
ATGCAGGCAGGCAGGCAAGCCTTTGCATCTTAAGTGTGTGCGGCAGGCAC
GATACTGCCGGCGTGTTTTCTTCGGTGCGATGCGTACAATACAGTACGCC
CCTTGCATGCTGACCTATCTGCATCCATGGGGACCCCGTGTTTCTGGGCA
GGTGGAGACGGCCGTCAGAGGTGATGCCCGGACAGCCGCGCATGATCGGC
AACGTCAACCCTTACAGCATCAGGCAGGACCTCATCACGGACTGCAGCTT
CGTGGCGTCCCTGTGCATCGCTTCGGCCTTCGAGCGACGGTTTCACAAGC
AGCTGATCACCGGCATCATATACCCCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12164:4407..5085+

>mRNA_L-elsbetiae_contig12164.1802.1 ID=mRNA_L-elsbetiae_contig12164.1802.1|Name=mRNA_L-elsbetiae_contig12164.1802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig12164:4407..5085+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTCGGACAAACCGTGGACAGATCCGGAAGGCCTTCTGTCCCTGTCGGA
GCCTCAGCAGACTAAGCTTTTGGGGCCTCGGACAAACCGTGGACAGATCC
GGAAGGCCTTCTGTCCCTGTCGGAGCCTCAGCAGACTAAGCTTTTGGGGT
GGAGACGGCCGTCAGAGGTGATGCCCGGACAGCCGCGCATGATCGGCAAC
GTCAACCCTTACAGCATCAGGCAGGACCTCATCACGGACTGCAGCTTCGT
GGCGTCCCTGTGCATCGCTTCGGCCTTCGAGCGACGGTTTCACAAGCAGC
TGATCACCGGCATCATATACCCCCAGGTGGAGACGGCCGTCAGAGGTGAT
GCCCGGACAGCCGCGCATGATCGGCAACGTCAACCCTTACAGCATCAGGC
AGGACCTCATCACGGACTGCAGCTTCGTGGCGTCCCTGTGCATCGCTTCG
GCCTTCGAGCGACGGTTTCACAAGCAGCTGATCACCGGCATCATATACCC
CCAG
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