mRNA_L-elsbetiae_contig1216.1799.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1216.1799.1
Unique NamemRNA_L-elsbetiae_contig1216.1799.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1216.1799.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.160e-25
Identity = 62/93 (66.67%), Postives = 68/93 (73.12%), Query Frame = 3 
Query:   48 AGFDAHQLLS*ANPSHLETLCARDFEVFTRRMV-AARRLCTGRLVPVLEGGHALGCQSTVRRKGQTQSASPVEGFASRARRNARDAAVTTLAD 323
            AGFDAHQ    A+PSHL TLCARDFEVFTRRMV AA RLC GR+V VLEGG+AL CQ+TVR KG  +  SP+ G   R  R AR AA  TLAD
Sbjct:  381 AGFDAHQ----ADPSHLGTLCARDFEVFTRRMVTAAERLCAGRMVSVLEGGYALDCQATVRPKGHLRPPSPIGGVVGRVGRKARGAAAETLAD 469
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BLAST of mRNA_L-elsbetiae_contig1216.1799.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.110e-24
Identity = 61/93 (65.59%), Postives = 67/93 (72.04%), Query Frame = 3 
Query:   48 AGFDAHQLLS*ANPSHLETLCARDFEVFTRRMV-AARRLCTGRLVPVLEGGHALGCQSTVRRKGQTQSASPVEGFASRARRNARDAAVTTLAD 323
            AGFDAHQ    A+PSHL TLCARDFEVFTRRMV AA RLC GR+V VLEGG+AL CQ+TVR KG  +  SP+ G   R  R AR  A  TLAD
Sbjct: 1804 AGFDAHQ----ADPSHLGTLCARDFEVFTRRMVTAAERLCAGRMVSVLEGGYALDCQATVRPKGHLRPPSPIGGVVGRVGRKARGTAAETLAD 1892
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1216.1799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3L8_9PHAE3.160e-2566.67Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D7G6J0_ECTSI2.110e-2465.59CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1216contigL-elsbetiae_contig1216:2278..4146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue7e-09
Seed eggNOG ortholog2880.D7G6J0
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size432
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1216.1799.1prot_L-elsbetiae_contig1216.1799.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1216 2885..4070 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.6282337-UTR-L-elsbetiae_contig1216:2277..23451622815416.6282337-UTR-L-elsbetiae_contig1216:2277..2345Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1216 2278..2345 +
1691682887.248743-UTR-L-elsbetiae_contig1216:2277..23451691682887.248743-UTR-L-elsbetiae_contig1216:2277..2345Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1216 2278..2345 +
1622815416.6381655-UTR-L-elsbetiae_contig1216:2812..28841622815416.6381655-UTR-L-elsbetiae_contig1216:2812..2884Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1216 2813..2884 +
1691682887.2680438-UTR-L-elsbetiae_contig1216:2812..28841691682887.2680438-UTR-L-elsbetiae_contig1216:2812..2884Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1216 2813..2884 +
1622815416.6867225-UTR-L-elsbetiae_contig1216:4070..41461622815416.6867225-UTR-L-elsbetiae_contig1216:4070..4146Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1216 4071..4146 +
1691682887.3041134-UTR-L-elsbetiae_contig1216:4070..41461691682887.3041134-UTR-L-elsbetiae_contig1216:4070..4146Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1216 4071..4146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.6496625-CDS-L-elsbetiae_contig1216:2884..29851622815416.6496625-CDS-L-elsbetiae_contig1216:2884..2985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1216 2885..2985 +
1691682887.277389-CDS-L-elsbetiae_contig1216:2884..29851691682887.277389-CDS-L-elsbetiae_contig1216:2884..2985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1216 2885..2985 +
1622815416.6610675-CDS-L-elsbetiae_contig1216:3279..33701622815416.6610675-CDS-L-elsbetiae_contig1216:3279..3370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1216 3280..3370 +
1691682887.2874331-CDS-L-elsbetiae_contig1216:3279..33701691682887.2874331-CDS-L-elsbetiae_contig1216:3279..3370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1216 3280..3370 +
1622815416.6743581-CDS-L-elsbetiae_contig1216:4046..40701622815416.6743581-CDS-L-elsbetiae_contig1216:4046..4070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1216 4047..4070 +
1691682887.295597-CDS-L-elsbetiae_contig1216:4046..40701691682887.295597-CDS-L-elsbetiae_contig1216:4046..4070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1216 4047..4070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1216.1799.1

>prot_L-elsbetiae_contig1216.1799.1 ID=prot_L-elsbetiae_contig1216.1799.1|Name=mRNA_L-elsbetiae_contig1216.1799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MVAARRLCTGRLVPVLEGGHALGCQSTVRRKGQTQSASPVEGFASRARRN
ARDAAVTTLADRARVRAPTHQ*
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mRNA from alignment at L-elsbetiae_contig1216:2278..4146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1216.1799.1 ID=mRNA_L-elsbetiae_contig1216.1799.1|Name=mRNA_L-elsbetiae_contig1216.1799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1869bp|location=Sequence derived from alignment at L-elsbetiae_contig1216:2278..4146+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGGCTGCTCTCGACGAGTTCAAGCCCAACCTGATTGTTTTGTCGCC
GGCTTCGATGCCCATCAGGTGTGGTGCGGCGGCTCTTACCTGTCTCGTCG
GCGTTGCCCCGTTGGAGTTACTCTGTAATTAGTGTGTGGCAGGCCGTTGT
TCGTCGACGTCGGTTCACGTCGCGAAATCTATCTCCAGCGCGTCAGCTAG
TTTGCAGGTCGCAGCTTACGCCTGTGTCTCCTACTTCGTATGTATCTATG
TAGCCCCTTTGACACAGAGTCACAAAATCTCTTTCGACAAGACTTCGGAA
AAATGGAGGAACCTCTCTACAAAGAGGTGGGACTTGATGATGACCGAATT
CCATGCAAAAGTGATGCGAGAAACTGATGCGAGAAAATTCCACCGAGTTT
AGAGCAAAACGAAACACCTAAAATACTACAAGAGCTCAACACCTCAACAA
ACAGCAAACACACACTTTTTCCCGAAAGAAAAATAAGAATCACGCTCGCT
GCGCTCCACCACACGCTGATGGCTGTGTGTGCTAGTTACTGTCGTAGGCG
AACCCGTCGCACCTGGAGACGCTTTGCGCGCGAGACTTCGAGGTGTTCAC
GAGGAGGATGGTCGCCGCGAGGCGCCTCTGCACCGGGCGGCTAGTGCCTG
TGCTGGAGGGAGGGCATGCCTTGGGCTGCCAGTCTACCGTCCGGCGCAAG
GGGCAGACGTGAGTTGATTTTTCGATCCAGGTTTGCTGAAGCGGACAAGC
GGATGGTTGGTTCTGTAGTCGTTTTTCTTTGTGCTCGAGGAGTGCAGTCT
GAACTGGCAAAACACTCCATTCCCGGAATAGTATATTTGACGACATGGTG
TGGATCTTGCGACTATAGGTTTAGCGCTGAGGCGTATGGTACACGTCAGA
TCCACTCGCCTTCTTCGGTGCGATCCACGCCGGGCTGATCACGAACATAT
CGATCTTGCCGTGATAGTAACCCGAAAACGTTAAATGTCATGAAACCGCC
AGGCAATCGGCATCTCCCGTTGAGGGCTTTGCTAGCCGTGCGAGGAGGAA
CGCGAGAGATGCGGCAGTCACAACTCTGGCAGACCGTGCGCGGGTGAGGA
AGCGCACGACAGCACGCTACTTTGATCTTTGTAGGTACACGCGTGGTGCT
TCACCGTTTCTCGAGATCCTTGCATGTGGAGAAAACGATTCACCCCAGGG
AATCGGTCCATTGCTCGATGGGTTCCATATGTGTCGTGTCCGTCCGTCCT
GGAAACAGTGTGGCCACAAAATAGTCAGCTTTCCCCTTCCTCCCGTGTAA
TACTAATGAAAAGTATACTATTTTGGCAGATGCCGATCATGATGTGCGGC
ATGACGATGAGCGCTTTAAATTTGCAAAATAACGCGTATCGTGATCCTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGACAG
TCCCCCCAAGTGGAGACGTGTACTACACCTTGCGGTGTACTACACTTTGC
AGTGATCCTGGTGCAGACAATCACGACGAGTTACAAATGTAGATATAGAC
ATGGCTGCCTCTGGAAGGGGTCACATGTTGGAAGGAAAAGCAGGCCGCGG
CACCTGCCATCACCACCAAGTTTCGGGGTAATGCAGCCCTTTTTCGGACG
GCATGAGGCCTCATTGCCTTCTTGTTTTTTCTCCGAATCCCCACTCTCTC
ATTCCAGTCGAATCAGCCCGCGCCCTCCCTCCGTGCGCCATCTCTTCCGA
ACCACGAACGCTGCATCAGGTGCGTGCGCCAACGCATCAGTAGGAAGAGA
GGGTGAGACGGTCCGTGCGTTCATCGTCACCGACAAGCCCTCTCAACACC
CTGGGCCTCGCGACTCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1216:2278..4146+

>mRNA_L-elsbetiae_contig1216.1799.1 ID=mRNA_L-elsbetiae_contig1216.1799.1|Name=mRNA_L-elsbetiae_contig1216.1799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig1216:2278..4146+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGCCGCGAGGCGCCTCTGCACCGGGCGGCTAGTGCCTGTGCTGGA
GGGAGGGCATGCCTTGGGCTGCCAGTCTACCGTCCGGCGCAAGGGGCAGA
CATGGTCGCCGCGAGGCGCCTCTGCACCGGGCGGCTAGTGCCTGTGCTGG
AGGGAGGGCATGCCTTGGGCTGCCAGTCTACCGTCCGGCGCAAGGGGCAG
ACGCAATCGGCATCTCCCGTTGAGGGCTTTGCTAGCCGTGCGAGGAGGAA
CGCGAGAGATGCGGCAGTCACAACTCTGGCAGACCGTGCGCGGGCAATCG
GCATCTCCCGTTGAGGGCTTTGCTAGCCGTGCGAGGAGGAACGCGAGAGA
TGCGGCAGTCACAACTCTGGCAGACCGTGCGCGGGTGCGTGCGCCAACGC
ATCAGTAGGTGCGTGCGCCAACGCATCAGTAG
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