mRNA_L-elsbetiae_contig12158.1797.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12158.1797.1
Unique NamemRNA_L-elsbetiae_contig12158.1797.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: D7FW26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW26_ECTSI)

HSP 1 Score: 569 bits (1466), Expect = 7.240e-199
Identity = 315/477 (66.04%), Postives = 359/477 (75.26%), Query Frame = 1
Query:   22 ALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIKSDFEDDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAKSLTPSTTAAGNTDASSQHNSPREGSPRPEERRGSDNGGHSNAQSRAAMEEDRVVVIDITQLTEE-SSSNGSSKV-----DRDER----WMGFKQRALRILQSPNIIAVAIGVVIAMISPLQRMLFDNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422
            ALTTSVLGTVR+F++L AGF+ASKFPR EPLL K+TCRCISRVCALLF PALM A TGATL+P  L+DAWQLVV GSFTI FSG+VAW  GR  FRRPEDRRAFRP  LAIAFPNSA FPLLL+DALCEQDYI SDF+DD  EC TQATGMIFIYVVVWQ+WFY WGFYALGQDD LE++L G+ AKS  PS     + + SS     +  +  P +  G           R +   D  VV+  ++  E  S ++G++       D D+     W G ++R  R++ SPN+IAVAIGV IAMI  LQ  LFDNPRAVLRPLGAA E  T+G+PTVAVSTLVMAGSLVQVPTV AA AAA            RRWRRFR +VG LHVVCRLIVVPAVGF +FWVARNQ+S+MGENRLMHLILLIELAMPSAA +IV+LNQLR+PATAGF A+LYLW YGASM TITAW ALAVH+VY
Sbjct:    7 ALTTSVLGTVRLFVVLLAGFLASKFPRNEPLLAKDTCRCISRVCALLFWPALMTAGTGATLTPGTLQDAWQLVVTGSFTIGFSGVVAWLVGRVSFRRPEDRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYINSDFDDDEVECFTQATGMIFIYVVVWQVWFYSWGFYALGQDDELERKLAGEAAKS--PSEATTDDVEISSPCEIAQGDALPPRQAEG--------GSGRQSPTHDGAVVVGASRRNEGVSGTSGTAAASHAGKDGDDEGCCSWAGLRRRLWRLVVSPNMIAVAIGVTIAMIPALQEQLFDNPRAVLRPLGAAVE--TIGSPTVAVSTLVMAGSLVQVPTVGAASAAASQGGQGDDDGTLRRWRRFRILVGFLHVVCRLIVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMVTITAWTALAVHLVY 471          
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A6H5JAX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX8_9PHAE)

HSP 1 Score: 553 bits (1426), Expect = 6.010e-193
Identity = 309/477 (64.78%), Postives = 356/477 (74.63%), Query Frame = 1
Query:   22 ALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIKSDFEDDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAKSLTPSTTAAGNTDASSQHNSPREGSPRPEERRGSDNGGHSNAQSRAAMEEDRVVVIDITQLT-EESSSNGSSKVDRDER---------WMGFKQRALRILQSPNIIAVAIGVVIAMISPLQRMLFDNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422
            AL+TSVLGT+RV  IL AGF AS++P++EPLL KETCR  SR CALLFLP+LMI+S GATL+P ALK++WQLVVAGSFT+A SG VAW  GR FFRRPEDRRAFRP GLAI F NSA FPLLLM+ALCEQDY++SD+ DDA EC TQATGMIFIYVVVWQ++F+GWGFYALG DDTLE+ LTGQ  ++ TPST        +S  +S R+           ++GG     +  A      VVIDI   T EESSS G++     E          W GFK+R  R+L SPNII+V IGVVIAMI+PLQ MLFDN R++LRPLGAA +  TVGTP VAVSTLVMAGSL QVPTVA   AA+            RR RRFR I G LHVVCRLIVVPA+GF +FWVAR Q+S+MGENRLMHLILLIE AMPSAA +IV+LNQLR+PATAGF A+LYLW YGASM TITAW ALAVH+VY
Sbjct:    7 ALSTSVLGTLRVLAILLAGFFASRWPKSEPLLAKETCRAFSRACALLFLPSLMISSLGATLNPEALKNSWQLVVAGSFTVALSGTVAWVVGRVFFRRPEDRRAFRPAGLAITFANSAGFPLLLMNALCEQDYVRSDYNDDALECFTQATGMIFIYVVVWQMYFFGWGFYALGHDDTLERSLTGQQTRTRTPSTKXXXXXXXTSSTSSARQ-----------EHGGVGRINAAEA------VVIDIEPCTGEESSSEGTTNAGGTEDGGDVSEGGPWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNSRSILRPLGAALQ--TVGTPEVAVSTLVMAGSLAQVPTVA---AASTQGGQGDDDGTLRRKRRFRIIAGFLHVVCRLIVVPAIGFTLFWVARTQSSVMGENRLMHLILLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 461          
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A6H5J918_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J918_9PHAE)

HSP 1 Score: 413 bits (1062), Expect = 6.710e-135
Identity = 291/687 (42.36%), Postives = 339/687 (49.34%), Query Frame = 1
Query:   22 ALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIK-------SDFEDDAAECLTQATGMIFI------------------------YVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAKSLTPSTTAAGNTDASSQHNSPREGSPRPEERRGSDNGGHSNAQSRAAMEE---DRVVVIDITQLTEESSSNGSSKV------DRDER----WMGFKQRALRILQSPNIIAVAIGVVIAMISPLQRMLFDNPRAVLRPLGAAFEAS--------------TVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIV------------------------------------------------------------------------------------------------------------------------------------------------------------------VPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422
            AL TSVLGTVR+ ++L AGF+ASKFP   PLLTK+TCRCISRVCALLF PALM A TGATL+P  L+DAWQLVV GSFTI FSG+VAW  GR  F+RPEDRRAFRP  LAIAFPNSA FPLLL+DALCEQDYI          F++       + TG+                           Y  + Q+WFY WGFYALGQDD LE++L G+ AK   PS     + + SS           P E    D      A   + M+    D  V++  ++  E  S  G + V      D D+     W G ++R  R+  SPN+IAVAIGV+IAM+  LQ +LFD+PRAVLRP GAA E                T+G+PTVAVSTLVMAGSLVQVPTV A  AAA            RRWRRFR +VG LHVVCRLIV                                                                                                                                                                  VPAVGF +FWVARNQ+S+MGENRLMHLILLIELAMPSAA +IV+LNQLR+PATAGF A+LYLW YGASM TITAW ALAVH+VY
Sbjct:    7 ALITSVLGTVRLSVVLLAGFLASKFP---PLLTKDTCRCISRVCALLFWPALMTAGTGATLTPGTLQDAWQLVVTGSFTIGFSGVVAWLVGRVSFQRPEDRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYINRWPTQNTKLFDNVLLWRGVETTGLYIATCELAPRPAACSHTLRRQGFSFHGYGQILQVWFYSWGFYALGQDDELERKLAGEEAK--IPSEATTDDVEISS-----------PCEIAQGDALPPLQADGGSGMQSPIHDGAVIVGASRRNEGVSGTGGTAVASHAGEDGDDAGCFSWAGLRRRLWRLAVSPNMIAVAIGVIIAMLPALQELLFDSPRAVLRPFGAAIEVGHCSLAATPVAIEQGTIGSPTVAVSTLVMAGSLVQVPTVGAGSAAATQGVQCDDDGTLRRWRRFRIVVGFLHVVCRLIVGEHADPRAARFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 677          
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A6H5J8G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8G0_9PHAE)

HSP 1 Score: 323 bits (828), Expect = 1.360e-100
Identity = 237/606 (39.11%), Postives = 292/606 (48.18%), Query Frame = 1
Query:   25 LTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIKSDFEDDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAKSLTPST-----------------------TAAGN---TDASSQHNSP-----REGSPR------------------PEERRGSDNGGHSNA---QSRAAMEEDRVVVI---------------------------------------DITQLTEESSSNGSSKVDRDE-------------------------------------------------RWMGFKQRALRILQSPNIIAVAIGVVIAMISPLQRMLFDNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422
            L TSVLGT R F++L  G+I S  P+ EPL+ KE  R  SRV   LFLP LM+A  GA L+P AL+D+W LVV+ + +I  S  VAW  G    RR + R  FRPV LAIAFPN+   PL+L DALCEQD I SDF+ D  EC  QATGMIFI++ VWQ+WFY WG Y    D+ LE  LT QPA +  P+T                       +  GN   T  SS  + P     R  SP+                   E   G   GG S A   Q+ AA   D   V+                                       D   L E++   G    D  E                                                  W   K RA  +L SP I+AV  G+VI  I PLQ MLF NP+A+LRPLG A +A  VG PTV VS+LVMAGSLV V  VA   A                WRR R + G L V  RL+ +PA  F IFWVA+  +S+MGENRLMHLILL+E AMP+A ++I  L+Q+RLP TAGF ++L +W Y AS  T++ W ALA+ M+Y
Sbjct:   24 LLTSVLGTFRFFVVLGVGYIVSVRPQREPLMPKEVGRHFSRVAMDLFLPCLMLAGMGANLNPGALRDSWHLVVSSTLSIGLSNGVAWAFGWLLMRR-DARAKFRPVQLAIAFPNALVVPLVLFDALCEQDLINSDFDGDNNECFDQATGMIFIFLAVWQVWFYAWGVYCFQNDNALELALTSQPAAAPLPTTVRETAISSGGTGPPHAPDPPRCQSGHGNGSITKVSSSTSPPSSVTLRNSSPKHTLHLIPAEAAKVDGDRASEWAEGGAVGGDSGAVDPQAGAAAAGDETGVVGAATESGTGATGTGAKSHGSPVGSLHSREVGVESTPLGRDQPTLMEQTGRGGCGDADASEVASMPRRRKENKAVADLLVIEEGNVIDGGGARGSGTGDVNGGRGSDSEGPWEEAKHRAWALLVSPVIVAVVAGIVICTIEPLQDMLFHNPQALLRPLGGAIQA--VGVPTVTVSSLVMAGSLVAVSAVADEAAPPAGGNEVAVPI----WRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTALAITMLY 622          
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: D7FW24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW24_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 7.940e-40
Identity = 87/168 (51.79%), Postives = 112/168 (66.67%), Query Frame = 1
Query:  919 MLFDNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422
            MLF NP+A+LRPLG A +A  VG PTV VS+LVMAGSLV V  VA   A +              WRR R ++G L V  RLI +PA  F +FW A+  +S+MGENRLMHLILL+E AMP+A ++I  L+Q+RLP TAGF ++L +W Y AS  T++ W A A+ M+Y
Sbjct:    1 MLFHNPQALLRPLGGAIQA--VGVPTVTVSSLVMAGSLVAVSAVANGAAPSAGGHEAAVPI----WRRPRFVMGFLLVFLRLIAIPAAFFGVFWGAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTAFAITMLY 162          
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A7S4E2T5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2T5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.520e-10
Identity = 69/231 (29.87%), Postives = 107/231 (46.32%), Query Frame = 1
Query:  790 SSKVDRDERWMG--FKQRALRILQSPNIIAVAIGVVIAMISPLQRMLF--DNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIV----------------GLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422
            ++K  R++R      K    R+   PN+I +  GV+I   +PL+R+LF  D P   LRP+G A E  T+G P VAV+ ++MA +L                         R  R F  +V                 +  ++ RL++VP + + IF V       +   R+  LI+L+ELAMP A  ++VTLN +     A   A  Y   Y  ++ T+TA+   A+H+VY
Sbjct:  179 AAKTQREDRSKAETAKLWCKRLFLQPNMIGMYAGVIIGA-TPLRRLLFRGDTP---LRPIGLALE--TLGAPVVAVTVMIMAAALAN-----------------GHARRRRTKREFSSVVENNSHASKEDTRDVATAVWFILARLVIVPVIAYPIFSVIN-----LPGGRMTTLIILLELAMPGAQTVLVTLNAVGSGHVAEEIAPWYFLQYATAIVTLTAFTVWALHIVY 381          
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A0G4H1B2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H1B2_VITBC)

HSP 1 Score: 71.2 bits (173), Expect = 1.280e-9
Identity = 60/216 (27.78%), Postives = 94/216 (43.52%), Query Frame = 1
Query:   31 TSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFR----RP----EDRRAFRP------VGLAIAFPNSAAFPLLLMDALCEQDYIKSDF------------------EDDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAK 582
            +S    ++V ++   GF+   +P  EP +     + +SR+   +FLP L   S G+ L+   +   W L++  SF     G V      +  R    RP    E+RRA  P      + LA+ + NS  FPL++M+A+CEQ Y  + F                  ED    C   A   +F+Y V W I F+  G+  L      +Q L  +P+K
Sbjct:   12 SSCKANLQVLLLAVVGFLCGYYPTEEPFIDTRAAKKLSRIALYVFLPCLCFCSIGSRLTLDDMATLWPLIM-WSFLQTVIGWVTSQVLCWLLRDVIDRPSLSKEERRAVGPSLIYSLLPLAVTWQNSGVFPLVMMEAICEQ-YPTAHFSQHTHPHYTTDAGEDVIMEDPVTSCFDDAAMFVFVYGVGWGISFWSVGYSKL--KSARDQVLRREPSK 223          
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A8E2DGV5_9APHY (Uncharacterized protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2DGV5_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 4.530e-6
Identity = 53/182 (29.12%), Postives = 87/182 (47.80%), Query Frame = 1
Query:    4 DGPARAALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIKSDFE-DDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDD 546
            DG   ++   ++ GT+ V + + AG+  ++  + +      T R IS++CA LFLP L+I   G  L+   L   W + V G  +   + L+ W AG+   R P          +A   PN+ A PLLL+ AL     + +  + +DA   L +A  MI + V+V Q + +      L +DD
Sbjct:    4 DGSFLSSFLGALQGTISVLLTVLAGYAFARPGKLD----HTTVRRISKLCANLFLPCLIIEQMGPQLTAEKLARLWVVPVWGLASTLLAHLIGW-AGQAVLRLPYWTI------VAAGRPNTTALPLLLLQALASTGVLDALGDGEDAGTTLRRAKAMILLNVIVQQTFTFQTAPAILKRDD 174          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FW26_ECTSI7.240e-19966.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAX8_9PHAE6.010e-19364.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5J918_9PHAE6.710e-13542.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8G0_9PHAE1.360e-10039.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW24_ECTSI7.940e-4051.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4E2T5_9STRA5.520e-1029.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0G4H1B2_VITBC1.280e-927.78Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A8E2DGV5_9APHY4.530e-629.12Uncharacterized protein n=1 Tax=Obba rivulosa TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12158contigL-elsbetiae_contig12158:1463..5313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score570.5
Seed ortholog evalue7.5e-160
Seed eggNOG ortholog2880.D7FW26
KEGG koko:K07088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.auxin efflux carrier
EggNOG OGsCOG0679@1,KOG2722@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Ec32 ortholog descriptionAuxin efflux carrier
Ec32 orthologEc-01_003120.1
Exons7
Model size1425
Cds size1425
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.4595845-CDS-L-elsbetiae_contig12158:1462..16001622815416.4595845-CDS-L-elsbetiae_contig12158:1462..1600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 1463..1600 -
1691682887.1202025-CDS-L-elsbetiae_contig12158:1462..16001691682887.1202025-CDS-L-elsbetiae_contig12158:1462..1600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 1463..1600 -
1622815416.4717019-CDS-L-elsbetiae_contig12158:2128..22451622815416.4717019-CDS-L-elsbetiae_contig12158:2128..2245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 2129..2245 -
1691682887.132015-CDS-L-elsbetiae_contig12158:2128..22451691682887.132015-CDS-L-elsbetiae_contig12158:2128..2245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 2129..2245 -
1622815416.482026-CDS-L-elsbetiae_contig12158:2622..28141622815416.482026-CDS-L-elsbetiae_contig12158:2622..2814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 2623..2814 -
1691682887.1428084-CDS-L-elsbetiae_contig12158:2622..28141691682887.1428084-CDS-L-elsbetiae_contig12158:2622..2814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 2623..2814 -
1622815416.4922779-CDS-L-elsbetiae_contig12158:3083..35601622815416.4922779-CDS-L-elsbetiae_contig12158:3083..3560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 3084..3560 -
1691682887.1586285-CDS-L-elsbetiae_contig12158:3083..35601691682887.1586285-CDS-L-elsbetiae_contig12158:3083..3560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 3084..3560 -
1622815416.5053277-CDS-L-elsbetiae_contig12158:3947..40231622815416.5053277-CDS-L-elsbetiae_contig12158:3947..4023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 3948..4023 -
1691682887.170964-CDS-L-elsbetiae_contig12158:3947..40231691682887.170964-CDS-L-elsbetiae_contig12158:3947..4023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 3948..4023 -
1622815416.5153873-CDS-L-elsbetiae_contig12158:4222..45381622815416.5153873-CDS-L-elsbetiae_contig12158:4222..4538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 4223..4538 -
1691682887.1790922-CDS-L-elsbetiae_contig12158:4222..45381691682887.1790922-CDS-L-elsbetiae_contig12158:4222..4538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 4223..4538 -
1622815416.525101-CDS-L-elsbetiae_contig12158:5204..53131622815416.525101-CDS-L-elsbetiae_contig12158:5204..5313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 5205..5313 -
1691682887.187316-CDS-L-elsbetiae_contig12158:5204..53131691682887.187316-CDS-L-elsbetiae_contig12158:5204..5313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12158 5205..5313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12158.1797.1prot_L-elsbetiae_contig12158.1797.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12158 1463..5313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12158.1797.1

>prot_L-elsbetiae_contig12158.1797.1 ID=prot_L-elsbetiae_contig12158.1797.1|Name=mRNA_L-elsbetiae_contig12158.1797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=475bp
MDGPARAALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRV
CALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRF
FFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIKSDFEDDAAE
CLTQATGMIFIYVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAKSLTPST
TAAGNTDASSQHNSPREGSPRPEERRGSDNGGHSNAQSRAAMEEDRVVVI
DITQLTEESSSNGSSKVDRDERWMGFKQRALRILQSPNIIAVAIGVVIAM
ISPLQRMLFDNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTV
AAAKAAAQGGQGGTGTLGHRRWRRFRCIVGLLHVVCRLIVVPAVGFAIFW
VARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQL
YLWHYGASMFTITAWAALAVHMVY*
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mRNA from alignment at L-elsbetiae_contig12158:1463..5313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12158.1797.1 ID=mRNA_L-elsbetiae_contig12158.1797.1|Name=mRNA_L-elsbetiae_contig12158.1797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3851bp|location=Sequence derived from alignment at L-elsbetiae_contig12158:1463..5313- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGGCCTGCACGGGCAGCGTTGACGACAAGTGTTCTGGGCACTGT GAGAGTGTTTATTATTCTTGCAGCGGGATTCATCGCGAGCAAGTTCCCCA GGACAGAGCGTGAGTGTTTCAACTGATGGTGATGTCAACGCAGCTTTCAG CTGCAAGATACATGGACTATTTATTCACGAAATTCCCTGCGAAAACAGAG TGTCGCGAGTCATGAGTCATGTCGTAAAAATGTAGGCTGCTAATTTCGTT CGGTCCACCTTTGTGACTAACAAGGGGCAGGGGGAGGGGCGAACTTACAT ATCGACGCCAATAACCCACACAGCAGCCATGACACAAGAGTAGGAAGGCA ACGCTGAGAGCCTCGAATCCACCGCCACCGCAACGAAAAGTAGAGTTTGG ATCCAGGCTTGCCGCGCGTCCTAAACCACGAATGAATGCACTCGACTGGT GCTGATGGTTTTGAGCGTGTAGGTGGTAACGAAAACGAAAGTCTGAAGCA CAACCAACCTCCAGTTCGTCTGCGGACTACATACGTAGTACGGCTGTATC TTTTGGCTGTGACAATCTCACAGCAGTATAGCAGAGCGATGTCCGTTGTT GTTGGGCCACATAACTGAAGCCCTATCCCACAGACGAATACGGATCGGGC CCGCTAGCTATTGCCCCTGCCTCGGAACACAGCTTTTAGAGAGGAAATGC CTGGGCATCCCAGCCCCGTGTCTCAGCGTACATATCCCGCAATGCTCCGA TTTCCAAAACCCAACGCTGGTGCAGCTCTCCTGACCAAGGAAACATGCCG CTGCATCAGCCGGGTGTGCGCTCTCCTTTTCTTGCCCGCGTTGATGATTG CGTCAACGGGAGCCACCCTGAGCCCAACGGCGCTTAAAGACGCCTGGCAG CTGGTGGTAGCCGGGAGCTTCACTATAGCTTTTTCGGGACTCGTTGCATG GACGGCTGGCCGTTTTTTTTTCCGGCGGCCTGAAGATCGACGCGCTTTCC GACCCGTAGGGCTCGCGATTGCGTTCCCCAACTCCGCCGCATTTCCGCTT CTGTTGATGGATGCACTGTGCGAACAGGACTACATCAAGAGGTAAGGAGC TCATACGAGTACAGGGTGTCAAGTATTTTCAAATGTTGTATACTGTGCAG GTGTTCCTGTTTGCGCCCTTACAGCGAGTTAGTTTAGATAACGTGTGTGT TTTCCAGGCATAGAGCGATCGTGACTCACCAGACCTTCTCCCATGCCCCT GCCCCTTTGCTCTCGCGGGCCGCGTGCCGGTGGCAACCAGTGACTTTGAA GACGATGCGGCTGAGTGCCTCACACAGGCCACTGGCATGATATTTATCTA CGTCGTCGTCTGGCAGGTGCGGTTCAATCTCAACAGAGACCGGCTCCTGC TTACAACATTAGTTGAGCCTTTTGGTTGTTCACCGCACCGAAAAGAGGCT AATTTGTTGCGGCACATTGCTCGTCGCCACCTTGTCGAGCTTGTAATATT CCCACTGATTGCTGTGCGGTTGATGGCCTCGCGAGCCTGCTGCATCCACA GACACCGAAAGTGATCACTTCCTTTCGAGCCACCGTTCATTTCGCGATGA ACTTGTGTACCTACCTTCTCATTTCGGTGCTGCTGCATTTGTTGGCCTCT GGTCTATCGACATCGCTCCCTTGTTGTTGTGATGGAAAGGAAGGGCGTTG CCTACGCCTTGCTACATAGCAACCGACACTTGCCCTGCACGTTTTCATAA TAGATATGGTTTTACGGCTGGGGATTCTACGCCCTTGGGCAAGACGACAC GCTGGAGCAAAGGCTTACTGGACAGCCGGCGAAGTCGCTTACCCCGTCGA CAACAGCCGCAGGCAATACTGATGCATCATCACAACACAATTCCCCCAGA GAGGGCTCGCCACGGCCAGAAGAGCGGAGGGGCAGCGACAATGGTGGCCA TTCGAATGCGCAGTCGAGGGCAGCAATGGAGGAAGATAGGGTAGTGGTGA TCGACATTACCCAGCTCACGGAGGAAAGCAGCAGCAACGGCAGCAGCAAG GTCGATCGCGACGAGCGCTGGATGGGGTTCAAGCAGAGGGCTTTGCGAAT CTTGCAGTCGCCCAACATCATCGCCGTCGCGATTGGTGTGGTCATCGCCA TGATTTCTCCCCTGCAGAGAATGTTGTTCGACAACCCGCGAGCGGTACTG CGGCCGTTGGGCGCGGCTTTTGAGGCGAGTGTTCTGTTCGGGTGCAGGGT TGATTTTCTGTGAGTTTTACTCTCGTGGCAGCACTGGAGATCGCGGAGAC GCACTCCTTTAGCCCCTTTGTACTACTGTACTGCTGTCCGACGCAAGTAG ATCTCCATCTCCAAGCATGGACCGCACGACCCGCTGGATTCGATGAAGCA TTTGCCCCACCTTATGTACCATGTTGCCCGCGCGGTCATATACCTCGTCG ACCCTGTTCGATGTCTGATTCCTCGCCCGTGTATAACCTCAAACTGCAGA CCGTCGGCACGCCAACGGTAGCCGTATCGACGCTGGTGATGGCCGGCAGT CTAGTGCAGGTTCCCACCGTAGCGGCAGCAAAAGCGGCAGCGCAAGGGGG CCAAGGTGGCACCGGAACGTTGGGGCATCGGAGGTGGCGCCGCTTTCGAT GTATCGTGGGCCTCTTGCATGTGGTGTGCCGCCTCATCGTGGTGAGTGAG CGCTCCTCTTGACCCCCTGAACCCCACAAGCGTCAGAAACGCCGGAAACG TGGCCAAAAATGGTTTTGGGTGTACGTGAAACGATGTTCGATGTCCCGTG TGAGATTGCGGGTTGTCTTTGGTACATAATTTTTGACAGTTTTTGTAGTT TTGATAAAAGTAAACGAGCTGCAGAATCCAGTGTGGCAGACGTGGGAAGC ACGCCGTGGTCTGTGAGAGGTTGTACCTACGTAGACAAAGAGGAATTCCG CCCCATGCTCATTTTTCTGAGGCTACTCACAGTAAGAAGCCGTAGCCTTT CCACCGCTTTCCCGTCGCTTGGGTTGACGGCCACAATCGTGCGGCTGTGT GGACGCCCTCACCCGAAGGTTCCTGCGGTGGGGTTCGCCATATTCTGGGT GGCAAGAAATCAAACGTCTATCATGGGCGAGAACAGGCTGATGCACCTCA TCTTGCTCATCGAGCTGGCCATGCCGTCGGCAGCGGTGAGACTTTTCTTC CACACAGAGTCTTGCGCGCGAACACATGTGCAACATATGTAACGTGCGTT CTTCGCACGCGATTCAAGAGTTGTCGAAGAAGCAGCCTTCGGAGGTGAAC CAGGGTGGTGCTGGTCTGTAAACCGCCGCAACGTTACTTCGGGCACAGGC TTTAACAGAGTGCATCGAGGCTGAAGTTTTTCATCGTGTGAAAGGTTCTA GATATGTATGATGCGTAGAACAAGCGCCCAGGCAGCCACAAATCATGAAC CCTTTCGAAACGGGTTTTGAGTTTGAACAGGAAGAATACGCCAACAAGGG GGCAGGCGTTTACTCGATGACACATGCTGCACTACATTTTGCCTTTTCGA ACAAGACCTACATAACACCGCCGTAAAACGTGAAACATTGTTAACAAATC TGTCCCTCAGCTGATATTGATTCCTCTTATCCTTTTTCCCATGCCTTCTG CTTCGCTCCCATTTCCGGTGCCCCCTTAACTGCCTGCTGCGGCTGTGATC ATGTTCCTCGCAGATGATCATAGTCACCTTGAATCAACTGAGGTTACCCG CGACCGCGGGTTTCACGGCACAACTGTATCTGTGGCACTACGGCGCGTCG ATGTTTACCATCACCGCTTGGGCTGCTCTTGCAGTGCACATGGTGTACTA A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12158:1463..5313-

>mRNA_L-elsbetiae_contig12158.1797.1 ID=mRNA_L-elsbetiae_contig12158.1797.1|Name=mRNA_L-elsbetiae_contig12158.1797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2850bp|location=Sequence derived from alignment at L-elsbetiae_contig12158:1463..5313- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGGCCTGCACGGGCAGCGTTGACGACAAGTGTTCTGGGCACTGT
GAGAGTGTTTATTATTCTTGCAGCGGGATTCATCGCGAGCAAGTTCCCCA
GGACAGAGCATGGACGGGCCTGCACGGGCAGCGTTGACGACAAGTGTTCT
GGGCACTGTGAGAGTGTTTATTATTCTTGCAGCGGGATTCATCGCGAGCA
AGTTCCCCAGGACAGAGCCTCTCCTGACCAAGGAAACATGCCGCTGCATC
AGCCGGGTGTGCGCTCTCCTTTTCTTGCCCGCGTTGATGATTGCGTCAAC
GGGAGCCACCCTGAGCCCAACGGCGCTTAAAGACGCCTGGCAGCTGGTGG
TAGCCGGGAGCTTCACTATAGCTTTTTCGGGACTCGTTGCATGGACGGCT
GGCCGTTTTTTTTTCCGGCGGCCTGAAGATCGACGCGCTTTCCGACCCGT
AGGGCTCGCGATTGCGTTCCCCAACTCCGCCGCATTTCCGCTTCTGTTGA
TGGATGCACTGTGCGAACAGGACTACATCAAGAGCTCTCCTGACCAAGGA
AACATGCCGCTGCATCAGCCGGGTGTGCGCTCTCCTTTTCTTGCCCGCGT
TGATGATTGCGTCAACGGGAGCCACCCTGAGCCCAACGGCGCTTAAAGAC
GCCTGGCAGCTGGTGGTAGCCGGGAGCTTCACTATAGCTTTTTCGGGACT
CGTTGCATGGACGGCTGGCCGTTTTTTTTTCCGGCGGCCTGAAGATCGAC
GCGCTTTCCGACCCGTAGGGCTCGCGATTGCGTTCCCCAACTCCGCCGCA
TTTCCGCTTCTGTTGATGGATGCACTGTGCGAACAGGACTACATCAAGAG
TGACTTTGAAGACGATGCGGCTGAGTGCCTCACACAGGCCACTGGCATGA
TATTTATCTACGTCGTCGTCTGGCAGTGACTTTGAAGACGATGCGGCTGA
GTGCCTCACACAGGCCACTGGCATGATATTTATCTACGTCGTCGTCTGGC
AGATATGGTTTTACGGCTGGGGATTCTACGCCCTTGGGCAAGACGACACG
CTGGAGCAAAGGCTTACTGGACAGCCGGCGAAGTCGCTTACCCCGTCGAC
AACAGCCGCAGGCAATACTGATGCATCATCACAACACAATTCCCCCAGAG
AGGGCTCGCCACGGCCAGAAGAGCGGAGGGGCAGCGACAATGGTGGCCAT
TCGAATGCGCAGTCGAGGGCAGCAATGGAGGAAGATAGGGTAGTGGTGAT
CGACATTACCCAGCTCACGGAGGAAAGCAGCAGCAACGGCAGCAGCAAGG
TCGATCGCGACGAGCGCTGGATGGGGTTCAAGCAGAGGGCTTTGCGAATC
TTGCAGTCGCCCAACATCATCGCCGTCGCGATTGGTGTGGTCATCGCCAT
GATTTCTCCCCTGCAGAGAATGTTGTTCGACAACCCGCGAGCGGTACTGC
GGCCGTTGGGCGCGGCTTTTGAGGCGAGTATATGGTTTTACGGCTGGGGA
TTCTACGCCCTTGGGCAAGACGACACGCTGGAGCAAAGGCTTACTGGACA
GCCGGCGAAGTCGCTTACCCCGTCGACAACAGCCGCAGGCAATACTGATG
CATCATCACAACACAATTCCCCCAGAGAGGGCTCGCCACGGCCAGAAGAG
CGGAGGGGCAGCGACAATGGTGGCCATTCGAATGCGCAGTCGAGGGCAGC
AATGGAGGAAGATAGGGTAGTGGTGATCGACATTACCCAGCTCACGGAGG
AAAGCAGCAGCAACGGCAGCAGCAAGGTCGATCGCGACGAGCGCTGGATG
GGGTTCAAGCAGAGGGCTTTGCGAATCTTGCAGTCGCCCAACATCATCGC
CGTCGCGATTGGTGTGGTCATCGCCATGATTTCTCCCCTGCAGAGAATGT
TGTTCGACAACCCGCGAGCGGTACTGCGGCCGTTGGGCGCGGCTTTTGAG
GCGAGTACCGTCGGCACGCCAACGGTAGCCGTATCGACGCTGGTGATGGC
CGGCAGTCTAGTGCAGGTTCCCACCGTAGCGGCAGCAAAAGCGGCAGCGC
AAGGGGGCCAAGGTGGCACCGGAACGTTGGGGCATCGGAGGTGGCGCCGC
TTTCGATGTATCGTGGGCCTCTTGCATGTGGTGTGCCGCCTCATCGTGAC
CGTCGGCACGCCAACGGTAGCCGTATCGACGCTGGTGATGGCCGGCAGTC
TAGTGCAGGTTCCCACCGTAGCGGCAGCAAAAGCGGCAGCGCAAGGGGGC
CAAGGTGGCACCGGAACGTTGGGGCATCGGAGGTGGCGCCGCTTTCGATG
TATCGTGGGCCTCTTGCATGTGGTGTGCCGCCTCATCGTGGTTCCTGCGG
TGGGGTTCGCCATATTCTGGGTGGCAAGAAATCAAACGTCTATCATGGGC
GAGAACAGGCTGATGCACCTCATCTTGCTCATCGAGCTGGCCATGCCGTC
GGCAGCGGTTCCTGCGGTGGGGTTCGCCATATTCTGGGTGGCAAGAAATC
AAACGTCTATCATGGGCGAGAACAGGCTGATGCACCTCATCTTGCTCATC
GAGCTGGCCATGCCGTCGGCAGCGATGATCATAGTCACCTTGAATCAACT
GAGGTTACCCGCGACCGCGGGTTTCACGGCACAACTGTATCTGTGGCACT
ACGGCGCGTCGATGTTTACCATCACCGCTTGGGCTGCTCTTGCAGTGCAC
ATGGTGTACTAAATGATCATAGTCACCTTGAATCAACTGAGGTTACCCGC
GACCGCGGGTTTCACGGCACAACTGTATCTGTGGCACTACGGCGCGTCGA
TGTTTACCATCACCGCTTGGGCTGCTCTTGCAGTGCACATGGTGTACTAA
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