mRNA_L-elsbetiae_contig12158.1797.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: D7FW26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW26_ECTSI) HSP 1 Score: 569 bits (1466), Expect = 7.240e-199 Identity = 315/477 (66.04%), Postives = 359/477 (75.26%), Query Frame = 1 Query: 22 ALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIKSDFEDDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAKSLTPSTTAAGNTDASSQHNSPREGSPRPEERRGSDNGGHSNAQSRAAMEEDRVVVIDITQLTEE-SSSNGSSKV-----DRDER----WMGFKQRALRILQSPNIIAVAIGVVIAMISPLQRMLFDNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422 ALTTSVLGTVR+F++L AGF+ASKFPR EPLL K+TCRCISRVCALLF PALM A TGATL+P L+DAWQLVV GSFTI FSG+VAW GR FRRPEDRRAFRP LAIAFPNSA FPLLL+DALCEQDYI SDF+DD EC TQATGMIFIYVVVWQ+WFY WGFYALGQDD LE++L G+ AKS PS + + SS + + P + G R + D VV+ ++ E S ++G++ D D+ W G ++R R++ SPN+IAVAIGV IAMI LQ LFDNPRAVLRPLGAA E T+G+PTVAVSTLVMAGSLVQVPTV AA AAA RRWRRFR +VG LHVVCRLIVVPAVGF +FWVARNQ+S+MGENRLMHLILLIELAMPSAA +IV+LNQLR+PATAGF A+LYLW YGASM TITAW ALAVH+VY Sbjct: 7 ALTTSVLGTVRLFVVLLAGFLASKFPRNEPLLAKDTCRCISRVCALLFWPALMTAGTGATLTPGTLQDAWQLVVTGSFTIGFSGVVAWLVGRVSFRRPEDRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYINSDFDDDEVECFTQATGMIFIYVVVWQVWFYSWGFYALGQDDELERKLAGEAAKS--PSEATTDDVEISSPCEIAQGDALPPRQAEG--------GSGRQSPTHDGAVVVGASRRNEGVSGTSGTAAASHAGKDGDDEGCCSWAGLRRRLWRLVVSPNMIAVAIGVTIAMIPALQEQLFDNPRAVLRPLGAAVE--TIGSPTVAVSTLVMAGSLVQVPTVGAASAAASQGGQGDDDGTLRRWRRFRILVGFLHVVCRLIVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMVTITAWTALAVHLVY 471
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A6H5JAX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX8_9PHAE) HSP 1 Score: 553 bits (1426), Expect = 6.010e-193 Identity = 309/477 (64.78%), Postives = 356/477 (74.63%), Query Frame = 1 Query: 22 ALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIKSDFEDDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAKSLTPSTTAAGNTDASSQHNSPREGSPRPEERRGSDNGGHSNAQSRAAMEEDRVVVIDITQLT-EESSSNGSSKVDRDER---------WMGFKQRALRILQSPNIIAVAIGVVIAMISPLQRMLFDNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422 AL+TSVLGT+RV IL AGF AS++P++EPLL KETCR SR CALLFLP+LMI+S GATL+P ALK++WQLVVAGSFT+A SG VAW GR FFRRPEDRRAFRP GLAI F NSA FPLLLM+ALCEQDY++SD+ DDA EC TQATGMIFIYVVVWQ++F+GWGFYALG DDTLE+ LTGQ ++ TPST +S +S R+ ++GG + A VVIDI T EESSS G++ E W GFK+R R+L SPNII+V IGVVIAMI+PLQ MLFDN R++LRPLGAA + TVGTP VAVSTLVMAGSL QVPTVA AA+ RR RRFR I G LHVVCRLIVVPA+GF +FWVAR Q+S+MGENRLMHLILLIE AMPSAA +IV+LNQLR+PATAGF A+LYLW YGASM TITAW ALAVH+VY Sbjct: 7 ALSTSVLGTLRVLAILLAGFFASRWPKSEPLLAKETCRAFSRACALLFLPSLMISSLGATLNPEALKNSWQLVVAGSFTVALSGTVAWVVGRVFFRRPEDRRAFRPAGLAITFANSAGFPLLLMNALCEQDYVRSDYNDDALECFTQATGMIFIYVVVWQMYFFGWGFYALGHDDTLERSLTGQQTRTRTPSTKXXXXXXXTSSTSSARQ-----------EHGGVGRINAAEA------VVIDIEPCTGEESSSEGTTNAGGTEDGGDVSEGGPWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNSRSILRPLGAALQ--TVGTPEVAVSTLVMAGSLAQVPTVA---AASTQGGQGDDDGTLRRKRRFRIIAGFLHVVCRLIVVPAIGFTLFWVARTQSSVMGENRLMHLILLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 461
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A6H5J918_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J918_9PHAE) HSP 1 Score: 413 bits (1062), Expect = 6.710e-135 Identity = 291/687 (42.36%), Postives = 339/687 (49.34%), Query Frame = 1 Query: 22 ALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIK-------SDFEDDAAECLTQATGMIFI------------------------YVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAKSLTPSTTAAGNTDASSQHNSPREGSPRPEERRGSDNGGHSNAQSRAAMEE---DRVVVIDITQLTEESSSNGSSKV------DRDER----WMGFKQRALRILQSPNIIAVAIGVVIAMISPLQRMLFDNPRAVLRPLGAAFEAS--------------TVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIV------------------------------------------------------------------------------------------------------------------------------------------------------------------VPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422 AL TSVLGTVR+ ++L AGF+ASKFP PLLTK+TCRCISRVCALLF PALM A TGATL+P L+DAWQLVV GSFTI FSG+VAW GR F+RPEDRRAFRP LAIAFPNSA FPLLL+DALCEQDYI F++ + TG+ Y + Q+WFY WGFYALGQDD LE++L G+ AK PS + + SS P E D A + M+ D V++ ++ E S G + V D D+ W G ++R R+ SPN+IAVAIGV+IAM+ LQ +LFD+PRAVLRP GAA E T+G+PTVAVSTLVMAGSLVQVPTV A AAA RRWRRFR +VG LHVVCRLIV VPAVGF +FWVARNQ+S+MGENRLMHLILLIELAMPSAA +IV+LNQLR+PATAGF A+LYLW YGASM TITAW ALAVH+VY Sbjct: 7 ALITSVLGTVRLSVVLLAGFLASKFP---PLLTKDTCRCISRVCALLFWPALMTAGTGATLTPGTLQDAWQLVVTGSFTIGFSGVVAWLVGRVSFQRPEDRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYINRWPTQNTKLFDNVLLWRGVETTGLYIATCELAPRPAACSHTLRRQGFSFHGYGQILQVWFYSWGFYALGQDDELERKLAGEEAK--IPSEATTDDVEISS-----------PCEIAQGDALPPLQADGGSGMQSPIHDGAVIVGASRRNEGVSGTGGTAVASHAGEDGDDAGCFSWAGLRRRLWRLAVSPNMIAVAIGVIIAMLPALQELLFDSPRAVLRPFGAAIEVGHCSLAATPVAIEQGTIGSPTVAVSTLVMAGSLVQVPTVGAGSAAATQGVQCDDDGTLRRWRRFRIVVGFLHVVCRLIVGEHADPRAARFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 677
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A6H5J8G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8G0_9PHAE) HSP 1 Score: 323 bits (828), Expect = 1.360e-100 Identity = 237/606 (39.11%), Postives = 292/606 (48.18%), Query Frame = 1 Query: 25 LTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIKSDFEDDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAKSLTPST-----------------------TAAGN---TDASSQHNSP-----REGSPR------------------PEERRGSDNGGHSNA---QSRAAMEEDRVVVI---------------------------------------DITQLTEESSSNGSSKVDRDE-------------------------------------------------RWMGFKQRALRILQSPNIIAVAIGVVIAMISPLQRMLFDNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422 L TSVLGT R F++L G+I S P+ EPL+ KE R SRV LFLP LM+A GA L+P AL+D+W LVV+ + +I S VAW G RR + R FRPV LAIAFPN+ PL+L DALCEQD I SDF+ D EC QATGMIFI++ VWQ+WFY WG Y D+ LE LT QPA + P+T + GN T SS + P R SP+ E G GG S A Q+ AA D V+ D L E++ G D E W K RA +L SP I+AV G+VI I PLQ MLF NP+A+LRPLG A +A VG PTV VS+LVMAGSLV V VA A WRR R + G L V RL+ +PA F IFWVA+ +S+MGENRLMHLILL+E AMP+A ++I L+Q+RLP TAGF ++L +W Y AS T++ W ALA+ M+Y Sbjct: 24 LLTSVLGTFRFFVVLGVGYIVSVRPQREPLMPKEVGRHFSRVAMDLFLPCLMLAGMGANLNPGALRDSWHLVVSSTLSIGLSNGVAWAFGWLLMRR-DARAKFRPVQLAIAFPNALVVPLVLFDALCEQDLINSDFDGDNNECFDQATGMIFIFLAVWQVWFYAWGVYCFQNDNALELALTSQPAAAPLPTTVRETAISSGGTGPPHAPDPPRCQSGHGNGSITKVSSSTSPPSSVTLRNSSPKHTLHLIPAEAAKVDGDRASEWAEGGAVGGDSGAVDPQAGAAAAGDETGVVGAATESGTGATGTGAKSHGSPVGSLHSREVGVESTPLGRDQPTLMEQTGRGGCGDADASEVASMPRRRKENKAVADLLVIEEGNVIDGGGARGSGTGDVNGGRGSDSEGPWEEAKHRAWALLVSPVIVAVVAGIVICTIEPLQDMLFHNPQALLRPLGGAIQA--VGVPTVTVSSLVMAGSLVAVSAVADEAAPPAGGNEVAVPI----WRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTALAITMLY 622
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: D7FW24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW24_ECTSI) HSP 1 Score: 150 bits (379), Expect = 7.940e-40 Identity = 87/168 (51.79%), Postives = 112/168 (66.67%), Query Frame = 1 Query: 919 MLFDNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIVGLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422 MLF NP+A+LRPLG A +A VG PTV VS+LVMAGSLV V VA A + WRR R ++G L V RLI +PA F +FW A+ +S+MGENRLMHLILL+E AMP+A ++I L+Q+RLP TAGF ++L +W Y AS T++ W A A+ M+Y Sbjct: 1 MLFHNPQALLRPLGGAIQA--VGVPTVTVSSLVMAGSLVAVSAVANGAAPSAGGHEAAVPI----WRRPRFVMGFLLVFLRLIAIPAAFFGVFWGAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTAFAITMLY 162
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A7S4E2T5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2T5_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 5.520e-10 Identity = 69/231 (29.87%), Postives = 107/231 (46.32%), Query Frame = 1 Query: 790 SSKVDRDERWMG--FKQRALRILQSPNIIAVAIGVVIAMISPLQRMLF--DNPRAVLRPLGAAFEASTVGTPTVAVSTLVMAGSLVQVPTVAAAKAAAXXXXXXXXXXXXRRWRRFRCIV----------------GLLHVVCRLIVVPAVGFAIFWVARNQTSIMGENRLMHLILLIELAMPSAAMIIVTLNQLRLPATAGFTAQLYLWHYGASMFTITAWAALAVHMVY 1422 ++K R++R K R+ PN+I + GV+I +PL+R+LF D P LRP+G A E T+G P VAV+ ++MA +L R R F +V + ++ RL++VP + + IF V + R+ LI+L+ELAMP A ++VTLN + A A Y Y ++ T+TA+ A+H+VY Sbjct: 179 AAKTQREDRSKAETAKLWCKRLFLQPNMIGMYAGVIIGA-TPLRRLLFRGDTP---LRPIGLALE--TLGAPVVAVTVMIMAAALAN-----------------GHARRRRTKREFSSVVENNSHASKEDTRDVATAVWFILARLVIVPVIAYPIFSVIN-----LPGGRMTTLIILLELAMPGAQTVLVTLNAVGSGHVAEEIAPWYFLQYATAIVTLTAFTVWALHIVY 381
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A0G4H1B2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H1B2_VITBC) HSP 1 Score: 71.2 bits (173), Expect = 1.280e-9 Identity = 60/216 (27.78%), Postives = 94/216 (43.52%), Query Frame = 1 Query: 31 TSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFR----RP----EDRRAFRP------VGLAIAFPNSAAFPLLLMDALCEQDYIKSDF------------------EDDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDDTLEQRLTGQPAK 582 +S ++V ++ GF+ +P EP + + +SR+ +FLP L S G+ L+ + W L++ SF G V + R RP E+RRA P + LA+ + NS FPL++M+A+CEQ Y + F ED C A +F+Y V W I F+ G+ L +Q L +P+K Sbjct: 12 SSCKANLQVLLLAVVGFLCGYYPTEEPFIDTRAAKKLSRIALYVFLPCLCFCSIGSRLTLDDMATLWPLIM-WSFLQTVIGWVTSQVLCWLLRDVIDRPSLSKEERRAVGPSLIYSLLPLAVTWQNSGVFPLVMMEAICEQ-YPTAHFSQHTHPHYTTDAGEDVIMEDPVTSCFDDAAMFVFVYGVGWGISFWSVGYSKL--KSARDQVLRREPSK 223
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Match: A0A8E2DGV5_9APHY (Uncharacterized protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2DGV5_9APHY) HSP 1 Score: 60.1 bits (144), Expect = 4.530e-6 Identity = 53/182 (29.12%), Postives = 87/182 (47.80%), Query Frame = 1 Query: 4 DGPARAALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVCALLFLPALMIASTGATLSPTALKDAWQLVVAGSFTIAFSGLVAWTAGRFFFRRPEDRRAFRPVGLAIAFPNSAAFPLLLMDALCEQDYIKSDFE-DDAAECLTQATGMIFIYVVVWQIWFYGWGFYALGQDD 546 DG ++ ++ GT+ V + + AG+ ++ + + T R IS++CA LFLP L+I G L+ L W + V G + + L+ W AG+ R P +A PN+ A PLLL+ AL + + + +DA L +A MI + V+V Q + + L +DD Sbjct: 4 DGSFLSSFLGALQGTISVLLTVLAGYAFARPGKLD----HTTVRRISKLCANLFLPCLIIEQMGPQLTAEKLARLWVVPVWGLASTLLAHLIGW-AGQAVLRLPYWTI------VAAGRPNTTALPLLLLQALASTGVLDALGDGEDAGTTLRRAKAMILLNVIVQQTFTFQTAPAILKRDD 174 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12158.1797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12158.1797.1 >prot_L-elsbetiae_contig12158.1797.1 ID=prot_L-elsbetiae_contig12158.1797.1|Name=mRNA_L-elsbetiae_contig12158.1797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=475bp MDGPARAALTTSVLGTVRVFIILAAGFIASKFPRTEPLLTKETCRCISRVback to top mRNA from alignment at L-elsbetiae_contig12158:1463..5313- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12158.1797.1 ID=mRNA_L-elsbetiae_contig12158.1797.1|Name=mRNA_L-elsbetiae_contig12158.1797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3851bp|location=Sequence derived from alignment at L-elsbetiae_contig12158:1463..5313- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12158:1463..5313- >mRNA_L-elsbetiae_contig12158.1797.1 ID=mRNA_L-elsbetiae_contig12158.1797.1|Name=mRNA_L-elsbetiae_contig12158.1797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2850bp|location=Sequence derived from alignment at L-elsbetiae_contig12158:1463..5313- (Laminarionema elsbetiae ELsaHSoW15)back to top |