mRNA_L-elsbetiae_contig12157.1795.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12157.1795.1
Unique NamemRNA_L-elsbetiae_contig12157.1795.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12157.1795.1 vs. uniprot
Match: A0A6H5K075_9PHAE (DUF4470 domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.040e-19
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 FDFIDSSYLADTLGIMNVVMAASPLLKPSPHAVLRTDLRRSGHARKRLTRAK 156
            FD IDSSYLA+ LGI+NVVMA SPLLKPSPHAV+RTDLRRSG ARKRLTRAK
Sbjct:  505 FDLIDSSYLANNLGILNVVMATSPLLKPSPHAVVRTDLRRSGPARKRLTRAK 556
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BLAST of mRNA_L-elsbetiae_contig12157.1795.1 vs. uniprot
Match: A0A4V1ISJ4_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1ISJ4_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 5.360e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 FDFIDSSYLADTLGIMNVVMAASPLLKPSPHAVLRTD 111
            FD ID+S L D LG++N+++A  PLLKP  HA+L TD
Sbjct:  374 FDVIDTSNLTDHLGLLNILVATGPLLKPVLHAILHTD 410
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BLAST of mRNA_L-elsbetiae_contig12157.1795.1 vs. uniprot
Match: A0A0C4DWY8_MAGP6 (MYND-type zinc finger protein samB n=1 Tax=Magnaporthiopsis poae (strain ATCC 64411 / 73-15) TaxID=644358 RepID=A0A0C4DWY8_MAGP6)

HSP 1 Score: 48.1 bits (113), Expect = 5.390e-5
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 FDFIDSSYLADTLGIMNVVMAASPLLKPSPHAVLRTDL 114
            FD ID+S LAD+LG +N++ +A PLLKP+P A L T++
Sbjct:  379 FDAIDTSNLADSLGALNILFSAGPLLKPAPWAALSTEM 416
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12157.1795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K075_9PHAE3.040e-1986.54DUF4470 domain-containing protein (Fragment) n=2 T... [more]
A0A4V1ISJ4_9FUNG5.360e-556.76Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
A0A0C4DWY8_MAGP65.390e-555.26MYND-type zinc finger protein samB n=1 Tax=Magnapo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12157contigL-elsbetiae_contig12157:583..738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.3373897-CDS-L-elsbetiae_contig12157:582..7381622815416.3373897-CDS-L-elsbetiae_contig12157:582..738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12157 583..738 -
1691682887.039957-CDS-L-elsbetiae_contig12157:582..7381691682887.039957-CDS-L-elsbetiae_contig12157:582..738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12157 583..738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12157.1795.1prot_L-elsbetiae_contig12157.1795.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12157 583..738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12157.1795.1

>prot_L-elsbetiae_contig12157.1795.1 ID=prot_L-elsbetiae_contig12157.1795.1|Name=mRNA_L-elsbetiae_contig12157.1795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
FDFIDSSYLADTLGIMNVVMAASPLLKPSPHAVLRTDLRRSGHARKRLTR
AK
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mRNA from alignment at L-elsbetiae_contig12157:583..738-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12157.1795.1 ID=mRNA_L-elsbetiae_contig12157.1795.1|Name=mRNA_L-elsbetiae_contig12157.1795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig12157:583..738- (Laminarionema elsbetiae ELsaHSoW15)
TTTGATTTTATCGACTCGTCGTACCTGGCCGACACCCTGGGCATCATGAA
CGTCGTCATGGCGGCCTCCCCGCTGCTCAAGCCGTCGCCGCACGCCGTCC
TACGCACGGACCTGCGTAGGAGCGGCCACGCCCGCAAGCGCCTGACCCGC
GCCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12157:583..738-

>mRNA_L-elsbetiae_contig12157.1795.1 ID=mRNA_L-elsbetiae_contig12157.1795.1|Name=mRNA_L-elsbetiae_contig12157.1795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig12157:583..738- (Laminarionema elsbetiae ELsaHSoW15)
TTTGATTTTATCGACTCGTCGTACCTGGCCGACACCCTGGGCATCATGAA
CGTCGTCATGGCGGCCTCCCCGCTGCTCAAGCCGTCGCCGCACGCCGTCC
TACGCACGGACCTGCGTAGGAGCGGCCACGCCCGCAAGCGCCTGACCCGC
GCCAAGTTTGATTTTATCGACTCGTCGTACCTGGCCGACACCCTGGGCAT
CATGAACGTCGTCATGGCGGCCTCCCCGCTGCTCAAGCCGTCGCCGCACG
CCGTCCTACGCACGGACCTGCGTAGGAGCGGCCACGCCCGCAAGCGCCTG
ACCCGCGCCAAG
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