mRNA_L-elsbetiae_contig12150.1790.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12150.1790.1
Unique NamemRNA_L-elsbetiae_contig12150.1790.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12150.1790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12150contigL-elsbetiae_contig12150:648..1439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.0790102-CDS-L-elsbetiae_contig12150:647..9161622815416.0790102-CDS-L-elsbetiae_contig12150:647..916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12150 648..916 -
1691682886.938069-CDS-L-elsbetiae_contig12150:647..9161691682886.938069-CDS-L-elsbetiae_contig12150:647..916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12150 648..916 -
1622815416.0926666-CDS-L-elsbetiae_contig12150:1402..14391622815416.0926666-CDS-L-elsbetiae_contig12150:1402..1439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12150 1403..1439 -
1691682886.948749-CDS-L-elsbetiae_contig12150:1402..14391691682886.948749-CDS-L-elsbetiae_contig12150:1402..1439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12150 1403..1439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12150.1790.1prot_L-elsbetiae_contig12150.1790.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12150 648..1439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12150.1790.1

>prot_L-elsbetiae_contig12150.1790.1 ID=prot_L-elsbetiae_contig12150.1790.1|Name=mRNA_L-elsbetiae_contig12150.1790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
RHGNLLHAGGHRSAVAARTTPRHHSESGIAHASSSTTSARANRRDAERGV
TPPVSVLTLRAADAWRGRAFPRENKLFLSKKQQETRKDLLVDQQTGAGNG
R*
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mRNA from alignment at L-elsbetiae_contig12150:648..1439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12150.1790.1 ID=mRNA_L-elsbetiae_contig12150.1790.1|Name=mRNA_L-elsbetiae_contig12150.1790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig12150:648..1439- (Laminarionema elsbetiae ELsaHSoW15)
CGCCACGGGAACCTTCTGCACGCAGGAGGACATCGAAGTAAGAAGCTTTT
GCTATGTGTCAACCGAGAGTTTTGGCAGAAAGTGCGCCCTGCATTTTATT
GACTGGGTGTTAGTCTAGTCTAGGAGACAGGCAATGATGATGTGTCACTG
GCGTGCTGTTGTTTCCTCCCTTGGTTTCGAGAGAGGAGAGGGCAAAGAAA
AAACGAGTGCTGATGCTGCACTCCTAAGGACCTTATCAGCAGTAGGCACT
CTCGAAGCTGTGCAGGTGGGTGGGTTATCGTTGCGTTGTGGGTTCGAGAG
CGGCGACACACGGCGGCTTTGGGTTTTTGAATTTGGCTCTGGACTCCGGC
AGGCGTAAATATGTGCAGAACCGGGAAAGTGGTGTCTTAGTTAACAACCG
CGCCAGCTGACCTAGCCCGGATGGTGCTCAAGAGGAGATGACTCAGCTGA
GTGCGGTTCAACAACTCGTGCACGCGCAACCCTTCTCCCCATTTGTGTCC
ACATATGTATATTTACACCCCAGGTGCTGTGGCTGCGCGGACCACCCCCC
GACACCACAGCGAGAGCGGTATAGCACACGCATCATCGAGCACCACGAGC
GCACGCGCGAACCGGCGAGACGCGGAGCGAGGAGTGACCCCCCCTGTGTC
TGTGTTAACGCTACGCGCCGCAGACGCGTGGCGTGGGCGCGCCTTCCCAC
GAGAAAACAAGCTTTTCCTTTCAAAAAAACAACAAGAAACGCGGAAAGAC
TTGCTGGTGGACCAACAAACAGGAGCCGGAAACGGGCGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12150:648..1439-

>mRNA_L-elsbetiae_contig12150.1790.1 ID=mRNA_L-elsbetiae_contig12150.1790.1|Name=mRNA_L-elsbetiae_contig12150.1790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig12150:648..1439- (Laminarionema elsbetiae ELsaHSoW15)
CGCCACGGGAACCTTCTGCACGCAGGAGGACATCGAACGCCACGGGAACC
TTCTGCACGCAGGAGGACATCGAAGTGCTGTGGCTGCGCGGACCACCCCC
CGACACCACAGCGAGAGCGGTATAGCACACGCATCATCGAGCACCACGAG
CGCACGCGCGAACCGGCGAGACGCGGAGCGAGGAGTGACCCCCCCTGTGT
CTGTGTTAACGCTACGCGCCGCAGACGCGTGGCGTGGGCGCGCCTTCCCA
CGAGAAAACAAGCTTTTCCTTTCAAAAAAACAACAAGAAACGCGGAAAGA
CTTGCTGGTGGACCAACAAACAGGAGCCGGAAACGGGCGCTGAGTGCTGT
GGCTGCGCGGACCACCCCCCGACACCACAGCGAGAGCGGTATAGCACACG
CATCATCGAGCACCACGAGCGCACGCGCGAACCGGCGAGACGCGGAGCGA
GGAGTGACCCCCCCTGTGTCTGTGTTAACGCTACGCGCCGCAGACGCGTG
GCGTGGGCGCGCCTTCCCACGAGAAAACAAGCTTTTCCTTTCAAAAAAAC
AACAAGAAACGCGGAAAGACTTGCTGGTGGACCAACAAACAGGAGCCGGA
AACGGGCGCTGA
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