mRNA_L-elsbetiae_contig1215.1789.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1215.1789.1
Unique NamemRNA_L-elsbetiae_contig1215.1789.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: A0A6G0WDL0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDL0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.770e-37
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 3
Query:   21 YDHFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELP 311
            Y H  HE+VR+YGALTLAQGW+V+KTR VGDGLIR+  C+A+CL + LQA+A+LRAQ++SPESH++LN +     + L   YGY  +FKTIK FELP
Sbjct:   43 YSHLVHEMVRLYGALTLAQGWLVWKTRLVGDGLIRKTFCQAYCLCFSLQAIAMLRAQISSPESHSVLNWINILVLAGLGGAYGYFLFFKTIKAFELP 139          
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: A0A836CB09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB09_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.090e-37
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 3
Query:    3 TLFGQSYDHFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELPGARGQS 329
            TL+G    H  HE+VRMYGALTLAQGW+   TR  GD  ++RA+ EA+ ++YGLQ +AL RAQ  SP+SHT LN+ G A F++L+AFY Y RW +TIK+FELP  + +S
Sbjct:   47 TLYGGELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELPTEQVKS 155          
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: A0A397DN74_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DN74_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.450e-36
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 3
Query:    3 TLFGQSYDHFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELP 311
             L G  Y H  HE+VR+YGALTLAQGW+V+KTR VGDGL+R+  C+A+CL + LQA+AL+RAQ++SPESH++LN +     + L   YGY   FKTIK FELP
Sbjct:   37 VLGGSEYGHLVHEVVRLYGALTLAQGWLVWKTRLVGDGLVRKTFCQAYCLCFTLQALALVRAQVSSPESHSVLNWINIIVLAGLGTAYGYFIVFKTIKAFELP 139          
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: A0A067D0E8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D0E8_SAPPC)

HSP 1 Score: 129 bits (323), Expect = 4.940e-36
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   21 YDHFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELPGARG 323
            Y H  HE+VR+YGALTLAQGW+V+KTR VGD LIR+  C+A+CL + LQ++A+ RAQ+ASPESH+LLN +     + L A YGY   FKT K FELP  +G
Sbjct:   43 YGHLVHEMVRLYGALTLAQGWLVWKTRLVGDALIRKTFCQAYCLCFSLQSLAMFRAQVASPESHSLLNWINILVLAGLGAAYGYFLAFKTAKAFELPSMKG 143          
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: A0A024TE78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE78_9STRA)

HSP 1 Score: 129 bits (323), Expect = 7.240e-36
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 3
Query:    3 TLFGQSYDHFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELP 311
             L    Y H  HE+VR+YGALTLAQGW+V+KTR VGD LIR+  C+A+CL + LQA AL+RAQ++SPESH++LN V     + L A YGY   FKTIKVFELP
Sbjct:   56 ALGASEYGHLVHEVVRLYGALTLAQGWLVWKTRLVGDALIRKTFCQAYCLCFLLQAAALVRAQVSSPESHSVLNWVNIIVLAALGAAYGYFVVFKTIKVFELP 158          
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: A0A485KNP7_9STRA (Aste57867_9606 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNP7_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.220e-35
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   21 YDHFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELP 311
            Y H  HE+VR+YGALTLAQGW+V+ TR VGDGLIR+  C+A+CL + LQA+A+LRAQ++SPESH++LN +     + L   YGY   FKTIK FELP
Sbjct:   46 YSHLAHEMVRLYGALTLAQGWLVWNTRLVGDGLIRKTFCQAYCLCFSLQALAMLRAQVSSPESHSVLNWLNIFILAGLGIAYGYFLAFKTIKAFELP 142          
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: K3XC85_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XC85_GLOUD)

HSP 1 Score: 124 bits (311), Expect = 3.470e-34
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 3
Query:   27 HFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELPGARGQSL 332
            HF HE VR+YGALTLAQGW+V++TR V D LIRR  C+A+C+ + LQA+AL+RAQL++PE+H+ L+ +       L   YGY   FKTIK FELPGA+ + L
Sbjct:   45 HFAHEFVRLYGALTLAQGWLVWRTRLVSDALIRRTFCQAYCICFSLQALALVRAQLSAPENHSSLHWLNILVLGGLGGAYGYFLVFKTIKAFELPGAQSKGL 146          
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: G4YMX6_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YMX6_PHYSP)

HSP 1 Score: 124 bits (311), Expect = 3.470e-34
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   27 HFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELPG 314
            H  HE VR+YGALTLAQGW+V++TR V D LIRR  C+A+C+ + LQAVALLRAQLASPESH++L+ V       L   YGY   FKTIK FELPG
Sbjct:   46 HLAHEFVRLYGALTLAQGWMVWRTRLVSDALIRRTFCQAYCICFLLQAVALLRAQLASPESHSMLHWVNILLLGGLGCAYGYFLVFKTIKAFELPG 141          
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: A0A1V9ZH25_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZH25_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.780e-34
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   21 YDHFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELPGARGQS 329
            Y H  HE+VR+YGALT AQGW+V+KTR V D ++R+  C+A+CL + LQ++A+LRAQ++SPESH++LN +     + L A YGY   FKT+K FELP  +  S
Sbjct:   43 YGHLVHEMVRLYGALTAAQGWLVWKTRLVSDPIVRKTFCQAYCLCFSLQSLAMLRAQVSSPESHSMLNWINILVLAGLGAAYGYFLLFKTVKAFELPSMKSTS 145          
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Match: W2G8X2_PHYPR (Uncharacterized protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=W2G8X2_PHYPR)

HSP 1 Score: 123 bits (308), Expect = 9.620e-34
Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   27 HFQHELVRMYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLASPESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELPG 314
            H  HE VR+YGALTLAQGW+V++TR V D LIRR  C+A+C+ + LQAVALLRAQ+ASPESH++L+ +       L   YGY   FKTIK FELPG
Sbjct:   45 HMAHEFVRLYGALTLAQGWMVWRTRLVSDALIRRTFCQAYCICFLLQAVALLRAQIASPESHSMLHWINILLLGGLGCAYGYFLVFKTIKAFELPG 140          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1215.1789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6G0WDL0_9STRA1.770e-3760.82Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A836CB09_9STRA6.090e-3755.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A397DN74_9STRA1.450e-3658.25Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A067D0E8_SAPPC4.940e-3658.42Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024TE78_9STRA7.240e-3660.19Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KNP7_9STRA5.220e-3559.79Aste57867_9606 protein n=1 Tax=Aphanomyces stellat... [more]
K3XC85_GLOUD3.470e-3455.88Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
G4YMX6_PHYSP3.470e-3462.50Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A1V9ZH25_9STRA6.780e-3452.43Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W2G8X2_PHYPR9.620e-3460.42Uncharacterized protein n=15 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1215contigL-elsbetiae_contig1215:13521..15369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1e-23
Seed eggNOG ortholog157072.XP_008879518.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2AWIT@1,2RZYW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size343
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1215.1789.1prot_L-elsbetiae_contig1215.1789.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1215 13526..15319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815412.9008842-UTR-L-elsbetiae_contig1215:13520..135251622815412.9008842-UTR-L-elsbetiae_contig1215:13520..13525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1215 13521..13525 -
1691682886.8881993-UTR-L-elsbetiae_contig1215:13520..135251691682886.8881993-UTR-L-elsbetiae_contig1215:13520..13525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1215 13521..13525 -
1622815416.0461645-UTR-L-elsbetiae_contig1215:15319..153691622815416.0461645-UTR-L-elsbetiae_contig1215:15319..15369Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1215 15320..15369 -
1691682886.9257815-UTR-L-elsbetiae_contig1215:15319..153691691682886.9257815-UTR-L-elsbetiae_contig1215:15319..15369Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1215 15320..15369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.0187118-CDS-L-elsbetiae_contig1215:13525..137861622815416.0187118-CDS-L-elsbetiae_contig1215:13525..13786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1215 13526..13786 -
1691682886.8992445-CDS-L-elsbetiae_contig1215:13525..137861691682886.8992445-CDS-L-elsbetiae_contig1215:13525..13786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1215 13526..13786 -
1622815416.0337272-CDS-L-elsbetiae_contig1215:15292..153191622815416.0337272-CDS-L-elsbetiae_contig1215:15292..15319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1215 15293..15319 -
1691682886.908449-CDS-L-elsbetiae_contig1215:15292..153191691682886.908449-CDS-L-elsbetiae_contig1215:15292..15319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1215 15293..15319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1215.1789.1

>prot_L-elsbetiae_contig1215.1789.1 ID=prot_L-elsbetiae_contig1215.1789.1|Name=mRNA_L-elsbetiae_contig1215.1789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MYGALTLAQGWVVFKTRTVGDGLIRRAICEAFCLAYGLQAVALLRAQLAS
PESHTLLNLVGCAAFSTLAAFYGYCRWFKTIKVFELPGARGQSLA*
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mRNA from alignment at L-elsbetiae_contig1215:13521..15369-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1215.1789.1 ID=mRNA_L-elsbetiae_contig1215.1789.1|Name=mRNA_L-elsbetiae_contig1215.1789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1849bp|location=Sequence derived from alignment at L-elsbetiae_contig1215:13521..15369- (Laminarionema elsbetiae ELsaHSoW15)
AGACGCTCTTCGGGCAGAGCTACGACCACTTCCAGCACGAGCTGGTCAGG ATGTACGGCGCCCTCACTCTCGCGCAGGTTTGCGGAGATATATTTGGTTG GGTTCGGCGTTGTTTTATTATTTAGAGAATATGTACATACGTGTTCTCGC GACAAAAATCTTAAGGGGGGCAAGCGCCGCAGAAGGGGGGGGGGTGGAGA CCTCGGAGAAGGGAACCTTTCTGTGTGACCACGGTTCAGTACTCTGGCAA GATGCATGCCCTCGTGATAAGGAGCCCGTCGAGCACTGGAAAATAAAATA AAACGAAAAAGTGGGATGTATCCCTCCCCGTCTTGTTGGTGGTGCTCTCT GTCCACCGAATGGTTACTCACACTGTTGTAGCTCTATTTCGGGGGGTGCC TATCGATTCCGAAGCCTTTGAAAGCATTTCCATGACAAATAAGCGCATGG GAAACCTCGGACGGGATGTTTCATCGTTCATTCAACTGCTTTCGGCCGGA AAAATCAAAACAGGTTCTCGTGCCGCCTTCTGTTGTGCCGGGGACCGACT GATGCCTTGCAGCAATACGCATGCCCTGCCTGACCCACGAGCATGGCCAG CGTGCAAGCCAGTCGCTCTGTCGTTGCCTCGTTTCCCAGCCCACGGCAGT TCCAACCGCAAGTTCCAACCCCAAGTTCCAACCCCAAGTTCCAACCACGG AGTCTAGTCTCTAATGTGGGGAGATCGTTTCTTTGTTTCTTTGCTTTCCC TGATTTATTTATTTTCAAAAAAACAATGAGAACCCTTTTCTGACCAGACG GAACCACTTCCAACCGCAAATGCACACCATGGACAAAGATTCGCAGCTAC GTATGTATGTACGGCAACCGAGACCTTCAGCAGTATCTACCACCTCGGGA ATTTCCGATGGGGTGCGGATGAGTGCTGTGTTTTTGGCCTCTGGTGGCAT GGCGGTGTTCTTTGTGAAGTTCCCAGCGGTCGGGACGTTCCGCGCCCGCT TTGGTGCCTCTCTGCTGGTGGTTGTGCTGCTTGCGATGGACTCTTGCGGC AGAGCCCGCGTGCCGTTGTTCCTCTCGCATGATGCCGCGGTGCCGCTGCT GCCTGCCCGTCCGTGTACGCGCGGCGCGTGCGTATGTGCCAACTGCTGTT AGTATTGTTGCTTACACACTTCGGTATGTTGTTATCGGCGTACGACGGCG GTGCTTTCCACTGGCTTTACCAGCAGGTTAGATACCAGCAGTTATATGTA TACGTCGGTGAGAGTAGGTCGGAAACTATTATACTCTTGCGTCAGCAACC CCCTCTCTCCTCCCCCCCCCCTCCTCCGAGGGGGGCCGCGGAGGATATTG GAAGGAGGTGTTCAGCCTCCGGGCTCAAGAAAAGCATACATCTCGCACCA CATACTGCGACGAAGAAGAGCGTGCGTGTGTTTCGTCTGCGTGTGTTTTT GCGTCTTATTCACATCGACCGCGCTCGCTCACCGACTGACCGAAAGTCAC ATTTTGAAAGATAAGCAGATAATCAAAAATGGAACCTGTTTTTTCTTCGC GCGCGCAACGTTGTTATGTTTTTGCGTGCGCAGGGGTGGGTAGTTTTCAA GACCAGGACGGTTGGAGATGGCCTCATCCGGAGGGCCATCTGCGAGGCCT TCTGCCTCGCCTATGGCCTGCAGGCGGTGGCGTTGTTGAGGGCGCAGCTG GCCTCCCCGGAGAGCCACACCCTGCTCAACTTGGTGGGGTGCGCGGCGTT CTCGACGCTGGCCGCCTTTTACGGGTACTGCCGGTGGTTCAAGACCATCA AGGTGTTCGAGCTGCCCGGTGCCCGTGGGCAATCGCTCGCATGACGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1215:13521..15369-

>mRNA_L-elsbetiae_contig1215.1789.1 ID=mRNA_L-elsbetiae_contig1215.1789.1|Name=mRNA_L-elsbetiae_contig1215.1789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig1215:13521..15369- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGGCGCCCTCACTCTCGCGCAGATGTACGGCGCCCTCACTCTCGC
GCAGGGGTGGGTAGTTTTCAAGACCAGGACGGTTGGAGATGGCCTCATCC
GGAGGGCCATCTGCGAGGCCTTCTGCCTCGCCTATGGCCTGCAGGCGGTG
GCGTTGTTGAGGGCGCAGCTGGCCTCCCCGGAGAGCCACACCCTGCTCAA
CTTGGTGGGGTGCGCGGCGTTCTCGACGCTGGCCGCCTTTTACGGGTACT
GCCGGTGGTTCAAGACCATCAAGGTGTTCGAGCTGCCCGGTGCCCGTGGG
CAATCGCTCGCATGAGGGTGGGTAGTTTTCAAGACCAGGACGGTTGGAGA
TGGCCTCATCCGGAGGGCCATCTGCGAGGCCTTCTGCCTCGCCTATGGCC
TGCAGGCGGTGGCGTTGTTGAGGGCGCAGCTGGCCTCCCCGGAGAGCCAC
ACCCTGCTCAACTTGGTGGGGTGCGCGGCGTTCTCGACGCTGGCCGCCTT
TTACGGGTACTGCCGGTGGTTCAAGACCATCAAGGTGTTCGAGCTGCCCG
GTGCCCGTGGGCAATCGCTCGCATGA
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