mRNA_L-elsbetiae_contig12143.1787.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12143.1787.1
Unique NamemRNA_L-elsbetiae_contig12143.1787.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12143.1787.1 vs. uniprot
Match: A0A6H5JA04_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA04_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.280e-18
Identity = 83/175 (47.43%), Postives = 101/175 (57.71%), Query Frame = 2 
Query:    2 EHESAMERVQGLEQMVDELVGDEDRLVXXXXXXXXXXXXXXXXXXXXXXXXXSTSAELEAAMSGLERAAEQREAASRAIGDKEAFNSRLQEELVSARSTXXXXXXXXXXXXXXXXXXXXXXXELGATLSGLRDSCFEYQARAMTAERSAEELAADVARLEEEARAALCREDALVA 526
            E+E+ ++RV GLEQ +DE V DEDR  XXXXXXXXXXXX             STSA+L  A + L  AAEQ+ AA  A+ DKE  NS L+E L  A ST                       ELG  L  +RDSCF+YQARAM AE+S E L A++  +EEE  A L RE+AL+A
Sbjct: 1083 EYEAVVDRVCGLEQTLDEFVMDEDRXXXXXXXXXXXXXXLEENEAAITGDLTSTSAQLGVAKADLTSAAEQQVAACNALTDKEKANSNLREALAVAESTATELQAAKDDLHAEVEKIKGEAQELGVKLEEMRDSCFDYQARAMKAEKSLEGLTAELTEVEEEKAACLSREEALIA 1257
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12143.1787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA04_9PHAE2.280e-1847.43Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12143contigL-elsbetiae_contig12143:1896..3044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size729
Cds size729
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815412.7194057-CDS-L-elsbetiae_contig12143:1895..20191622815412.7194057-CDS-L-elsbetiae_contig12143:1895..2019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12143 1896..2019 +
1691682886.7893386-CDS-L-elsbetiae_contig12143:1895..20191691682886.7893386-CDS-L-elsbetiae_contig12143:1895..2019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12143 1896..2019 +
1622815412.7367315-CDS-L-elsbetiae_contig12143:2439..30441622815412.7367315-CDS-L-elsbetiae_contig12143:2439..3044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12143 2440..3044 +
1691682886.8033798-CDS-L-elsbetiae_contig12143:2439..30441691682886.8033798-CDS-L-elsbetiae_contig12143:2439..3044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12143 2440..3044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12143.1787.1prot_L-elsbetiae_contig12143.1787.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12143 1896..3044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12143.1787.1

>prot_L-elsbetiae_contig12143.1787.1 ID=prot_L-elsbetiae_contig12143.1787.1|Name=mRNA_L-elsbetiae_contig12143.1787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
RARERDGEGAGVGADGGRARRGRGQAGGRGLRHAAQDRGDAGERGPDGGR
PGEHVRRTGGRHERPRARRGAAGGRLQSYRRQGGVQLEAAGGARLGEVHR
GRARGRRGQGPSGGRGSAEQVGGAGRDPLRAARLVLRVPGSRDDGREVGG
GARRGRGPPRGRSESGPVPGRRPRRPGGDPREGGSRQGSGGGSEGGGAGG
GAREFRREERGAGLRGGGARGGPAGGRRRRGEAGGGAEGAGGG
back to top

mRNA from alignment at L-elsbetiae_contig12143:1896..3044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12143.1787.1 ID=mRNA_L-elsbetiae_contig12143.1787.1|Name=mRNA_L-elsbetiae_contig12143.1787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1149bp|location=Sequence derived from alignment at L-elsbetiae_contig12143:1896..3044+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGCACGAGAGCGCGATGGAGAGGGTGCAGGGGTTGGAGCAGATGGTGG
ACGAGCTCGTCGGGGACGAGGACAGGCTGGTGGAAGAGGTCTGCGGCATG
CAGCACAAGATCGAGGAGATGCAGGTAGGTGAATGGCATGTACCGTAGTT
TTTTGTGAGCATTTTGTTCGGGTTTGAGTTCGCACCTAAGTGTGTGACGG
GGAGGGCTGCCTTTGTGCCTTTTCATGTCACAGCAAACCTAACCGCTACC
ATGTGCACTATCAGCCATGTAAATAGATGCAAATTAGTGGTTGTGTTGTG
CGTGCGCTAGCCTATGTGAACATGTTTGGCTATCCACGAGCTCCACGCCG
TGCTGTTTCAGCGACTCTCAGGTAGAACGAGCTTCCCCCGGCCGTTTCGC
GTCAAACTTGCTCAAAATCGTATCGCTGTATTGTATTGTAACTACATATG
TGTGTATGTGTCCTCGTCCTTCATGTGCTTGTTCAAAACAAACCGTCCCG
CGCACTTACTTACTTTCACTTGTGTGCCTGTGTTACGCTAACAGGCGAAC
GAGGACCTGATGGCGGCCGACCTGGCGAGCACGTCCGCCGAACTGGAGGC
CGCCATGAGCGGCCTCGAGCGCGCCGCGGAGCAGCGGGAGGCCGCCTCCA
GAGCTATCGGCGACAAGGAGGCGTTCAACTCGAGGCTGCAGGAGGAGCTC
GTCTCGGCGAGGTCCACCGCGGCCGAGCTCGAGGCCGCCGGGGACAAGGC
CCGAGCGGCGGCCGAGGAAGCGCGGAGCAAGTCGGAGGAGCTGGGCGCGA
CCCTCTCCGGGCTGCGCGACTCGTGCTTCGAGTACCAGGCTCGCGCGATG
ACGGCCGAGAGGTCGGCGGAGGAGCTCGCCGCGGACGTGGCCCGCCTCGA
GGAAGAAGCGAGAGCGGCCCTGTGCCGGGAAGACGCCCTCGTCGCCCTGG
AGGAGACCCGCGAGAGGGCGGCTCTCGCCAAGGATCTGGAGGTGGCAGCG
AAGGAGGAGGCGCTGGAGGCGGCGCGCGAGAATTTCGCCGCGAAGAGCGA
GGAGCTGGCCTCCGTGGCGGAGGAGCTCGAGGAGGTCCAGCAGGAGGCCG
CCGCCGACGAGGAGAGGCTGGGGGAGGCGCTGAGGGCGCTGGAGGAGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12143:1896..3044+

>mRNA_L-elsbetiae_contig12143.1787.1 ID=mRNA_L-elsbetiae_contig12143.1787.1|Name=mRNA_L-elsbetiae_contig12143.1787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig12143:1896..3044+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGCACGAGAGCGCGATGGAGAGGGTGCAGGGGTTGGAGCAGATGGTGG
ACGAGCTCGTCGGGGACGAGGACAGGCTGGTGGAAGAGGTCTGCGGCATG
CAGCACAAGATCGAGGAGATGCAGCGAGCACGAGAGCGCGATGGAGAGGG
TGCAGGGGTTGGAGCAGATGGTGGACGAGCTCGTCGGGGACGAGGACAGG
CTGGTGGAAGAGGTCTGCGGCATGCAGCACAAGATCGAGGAGATGCAGGC
GAACGAGGACCTGATGGCGGCCGACCTGGCGAGCACGTCCGCCGAACTGG
AGGCCGCCATGAGCGGCCTCGAGCGCGCCGCGGAGCAGCGGGAGGCCGCC
TCCAGAGCTATCGGCGACAAGGAGGCGTTCAACTCGAGGCTGCAGGAGGA
GCTCGTCTCGGCGAGGTCCACCGCGGCCGAGCTCGAGGCCGCCGGGGACA
AGGCCCGAGCGGCGGCCGAGGAAGCGCGGAGCAAGTCGGAGGAGCTGGGC
GCGACCCTCTCCGGGCTGCGCGACTCGTGCTTCGAGTACCAGGCTCGCGC
GATGACGGCCGAGAGGTCGGCGGAGGAGCTCGCCGCGGACGTGGCCCGCC
TCGAGGAAGAAGCGAGAGCGGCCCTGTGCCGGGAAGACGCCCTCGTCGCC
CTGGAGGAGACCCGCGAGAGGGCGGCTCTCGCCAAGGATCTGGAGGTGGC
AGCGAAGGAGGAGGCGCTGGAGGCGGCGCGCGAGAATTTCGCCGCGAAGA
GCGAGGAGCTGGCCTCCGTGGCGGAGGAGCTCGAGGAGGTCCAGCAGGAG
GCCGCCGCCGACGAGGAGAGGCTGGGGGAGGCGCTGAGGGCGCTGGAGGA
GGGGCGAACGAGGACCTGATGGCGGCCGACCTGGCGAGCACGTCCGCCGA
ACTGGAGGCCGCCATGAGCGGCCTCGAGCGCGCCGCGGAGCAGCGGGAGG
CCGCCTCCAGAGCTATCGGCGACAAGGAGGCGTTCAACTCGAGGCTGCAG
GAGGAGCTCGTCTCGGCGAGGTCCACCGCGGCCGAGCTCGAGGCCGCCGG
GGACAAGGCCCGAGCGGCGGCCGAGGAAGCGCGGAGCAAGTCGGAGGAGC
TGGGCGCGACCCTCTCCGGGCTGCGCGACTCGTGCTTCGAGTACCAGGCT
CGCGCGATGACGGCCGAGAGGTCGGCGGAGGAGCTCGCCGCGGACGTGGC
CCGCCTCGAGGAAGAAGCGAGAGCGGCCCTGTGCCGGGAAGACGCCCTCG
TCGCCCTGGAGGAGACCCGCGAGAGGGCGGCTCTCGCCAAGGATCTGGAG
GTGGCAGCGAAGGAGGAGGCGCTGGAGGCGGCGCGCGAGAATTTCGCCGC
GAAGAGCGAGGAGCTGGCCTCCGTGGCGGAGGAGCTCGAGGAGGTCCAGC
AGGAGGCCGCCGCCGACGAGGAGAGGCTGGGGGAGGCGCTGAGGGCGCTG
GAGGAGGG
back to top