mRNA_L-elsbetiae_contig12143.1786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12143.1786.1
Unique NamemRNA_L-elsbetiae_contig12143.1786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12143.1786.1 vs. uniprot
Match: A0A6H5JA04_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA04_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 8.920e-37
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 1 
Query:    1 RSDDLQERLVETRAEKTEVEGRLKQLQDDYDTLSDDQARFSQGRNQELEADLERSAEALRRAVAAGTARACVAQRLLLETESSLVEAEEALADAELRAEGEEL-----------------DRDRQIECLVEELGAAREYAEGVRALLVAAEKDD 411
            RS+DLQERLVETRA K ++EGRLKQ+QDDYDTLS+ QA F+Q R Q+LE+ LER+AE LRRAVAAGTARAC+ Q  L ETE+ L  AEE LADAELRAEGEE                  +R+++IE L+EEL  +R YA+G+RALL  AE ++
Sbjct:  895 RSNDLQERLVETRALKGQLEGRLKQVQDDYDTLSE-QAHFTQSRAQDLESSLERAAEDLRRAVAAGTARACIVQGQLRETEARLCLAEEGLADAELRAEGEEFFKLAQEAISKQAGEVCAEREKRIESLLEELETSRGYADGLRALLSGAEHEE 1047
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12143.1786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA04_9PHAE8.920e-3759.74Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12143contigL-elsbetiae_contig12143:894..1785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue3.1e-32
Seed eggNOG ortholog2880.D8LRJ7
KEGG koko:K04543,ko:K04546,ko:K10400,ko:K10402,ko:K11498
KEGG Pathwayko04014,ko04062,ko04151,ko04371,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04926,ko05032,ko05034,ko05167,ko05200,map04014,map04062,map04151,map04371,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04926,map05032,map05034,map05167,map05200
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0001667,GO:0001700,GO:0002009,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003007,GO:0003008,GO:0003013,GO:0003015,GO:0003365,GO:0003371,GO:0003379,GO:0003380,GO:0003674,GO:0003676,GO:0003677,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005834,GO:0005856,GO:0005871,GO:0005873,GO:0005875,GO:0005886,GO:0006810,GO:0006890,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007155,GO:0007163,GO:0007165,GO:0007186,GO:0007275,GO:0007276,GO:0007369,GO:0007391,GO:0007398,GO:0007399,GO:0007405,GO:0007498,GO:0007507,GO:0007584,GO:0007610,GO:0007635,GO:0007637,GO:0008104,GO:0008150,GO:0008283,GO:0008356,GO:0008574,GO:0009524,GO:0009555,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009898,GO:0009987,GO:0009991,GO:0010470,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016462,GO:0016477,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017145,GO:0019882,GO:0019884,GO:0019886,GO:0019897,GO:0019898,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022610,GO:0023052,GO:0030010,GO:0030154,GO:0030952,GO:0031234,GO:0031667,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033206,GO:0035050,GO:0035295,GO:0036445,GO:0040011,GO:0042074,GO:0042221,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043519,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045165,GO:0045176,GO:0045995,GO:0048002,GO:0048103,GO:0048193,GO:0048229,GO:0048232,GO:0048285,GO:0048383,GO:0048513,GO:0048568,GO:0048598,GO:0048609,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051301,GO:0051321,GO:0051493,GO:0051674,GO:0051704,GO:0051716,GO:0051780,GO:0055046,GO:0055057,GO:0055059,GO:0060004,GO:0060026,GO:0060027,GO:0060429,GO:0061343,GO:0061351,GO:0061640,GO:0065007,GO:0071840,GO:0071944,GO:0072089,GO:0072359,GO:0080175,GO:0097159,GO:0098552,GO:0098562,GO:0098722,GO:0098796,GO:0098797,GO:0140013,GO:1901363,GO:1902410,GO:1902494,GO:1903046,GO:1903047,GO:1905360,GO:1990939,GO:2000026
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04031,ko04131,ko04147,ko04812
Exons2
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815412.7687705-CDS-L-elsbetiae_contig12143:893..9471622815412.7687705-CDS-L-elsbetiae_contig12143:893..947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12143 894..947 +
1691682886.8123617-CDS-L-elsbetiae_contig12143:893..9471691682886.8123617-CDS-L-elsbetiae_contig12143:893..947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12143 894..947 +
1622815412.779688-CDS-L-elsbetiae_contig12143:1407..17851622815412.779688-CDS-L-elsbetiae_contig12143:1407..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12143 1408..1785 +
1691682886.8237157-CDS-L-elsbetiae_contig12143:1407..17851691682886.8237157-CDS-L-elsbetiae_contig12143:1407..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12143 1408..1785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12143.1786.1prot_L-elsbetiae_contig12143.1786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12143 894..1785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12143.1786.1

>prot_L-elsbetiae_contig12143.1786.1 ID=prot_L-elsbetiae_contig12143.1786.1|Name=mRNA_L-elsbetiae_contig12143.1786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
RSDDLQERLVETRAEKTEVEGRLKQLQDDYDTLSDDQARFSQGRNQELEA
DLERSAEALRRAVAAGTARACVAQRLLLETESSLVEAEEALADAELRAEG
EELDRDRQIECLVEELGAAREYAEGVRALLVAAEKDDDDRVGGG
back to top

mRNA from alignment at L-elsbetiae_contig12143:894..1785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12143.1786.1 ID=mRNA_L-elsbetiae_contig12143.1786.1|Name=mRNA_L-elsbetiae_contig12143.1786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=892bp|location=Sequence derived from alignment at L-elsbetiae_contig12143:894..1785+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGCGATGACCTTCAGGAACGCCTGGTGGAAACCCGCGCGGAGAAGAC
GGAGGTATGATACATACACACACACCCGAATGACCAATAGGGCCATTACT
TTGCGTTGTTCTTATCTCCGGCCGAAATGGACAATGGACATCGTCGCCGC
CACCCTGTTTCAATGGCTTCAGGTCGATAAATCAGTGCGTTGAGATGCCG
TCTTTGTCCTTGCTCGCTGTTGAACAAAGCAAAGATCGGCTGGTGACGAT
GCTAATGTGCAATGTGCTAAATACTATTCTTCTTCTGCTTTGGCGTTCCG
TCCCTTCTCGAGCGTTGCTGCCGCCATCTCCGGATATATGTACCTCCTGC
CTGCCTGCCTGCCGGCTGTCGTCGGGTACCACTTTTCACACAGCTCCAAA
AAAAACTTCGCCACCTATCTCAGCGCTTTTTTTCCCGTTTATTTCTATAC
AGTACTTCGTCTCGCTCGCTGAATCGAACTATTGTTAATGTCGTGCTGTT
GTCAATAACAAAAGGTGGAGGGCCGGCTGAAGCAGCTGCAGGACGACTAC
GACACGCTCTCGGACGACCAGGCGAGGTTCAGCCAGGGCCGCAACCAAGA
GCTCGAGGCCGACCTCGAGCGCTCCGCCGAGGCCCTCCGCCGCGCCGTCG
CCGCTGGCACCGCCCGGGCCTGCGTTGCGCAGCGCCTGCTCCTGGAGACC
GAGTCGAGCCTCGTGGAGGCGGAGGAGGCGCTGGCCGATGCCGAGCTGCG
CGCGGAGGGCGAAGAGTTGGACCGGGACCGGCAGATCGAGTGCCTTGTGG
AGGAGCTGGGAGCGGCTCGGGAGTACGCGGAGGGGGTTCGGGCCTTGCTC
GTGGCAGCGGAGAAGGACGATGACGACCGGGTTGGCGGGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12143:894..1785+

>mRNA_L-elsbetiae_contig12143.1786.1 ID=mRNA_L-elsbetiae_contig12143.1786.1|Name=mRNA_L-elsbetiae_contig12143.1786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig12143:894..1785+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGCGATGACCTTCAGGAACGCCTGGTGGAAACCCGCGCGGAGAAGAC
GGAGCGCAGCGATGACCTTCAGGAACGCCTGGTGGAAACCCGCGCGGAGA
AGACGGAGGTGGAGGGCCGGCTGAAGCAGCTGCAGGACGACTACGACACG
CTCTCGGACGACCAGGCGAGGTTCAGCCAGGGCCGCAACCAAGAGCTCGA
GGCCGACCTCGAGCGCTCCGCCGAGGCCCTCCGCCGCGCCGTCGCCGCTG
GCACCGCCCGGGCCTGCGTTGCGCAGCGCCTGCTCCTGGAGACCGAGTCG
AGCCTCGTGGAGGCGGAGGAGGCGCTGGCCGATGCCGAGCTGCGCGCGGA
GGGCGAAGAGTTGGACCGGGACCGGCAGATCGAGTGCCTTGTGGAGGAGC
TGGGAGCGGCTCGGGAGTACGCGGAGGGGGTTCGGGCCTTGCTCGTGGCA
GCGGAGAAGGACGATGACGACCGGGTTGGCGGGGGCGTGGAGGGCCGGCT
GAAGCAGCTGCAGGACGACTACGACACGCTCTCGGACGACCAGGCGAGGT
TCAGCCAGGGCCGCAACCAAGAGCTCGAGGCCGACCTCGAGCGCTCCGCC
GAGGCCCTCCGCCGCGCCGTCGCCGCTGGCACCGCCCGGGCCTGCGTTGC
GCAGCGCCTGCTCCTGGAGACCGAGTCGAGCCTCGTGGAGGCGGAGGAGG
CGCTGGCCGATGCCGAGCTGCGCGCGGAGGGCGAAGAGTTGGACCGGGAC
CGGCAGATCGAGTGCCTTGTGGAGGAGCTGGGAGCGGCTCGGGAGTACGC
GGAGGGGGTTCGGGCCTTGCTCGTGGCAGCGGAGAAGGACGATGACGACC
GGGTTGGCGGGGGC
back to top