mRNA_L-elsbetiae_contig1214.1785.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: D8LMI8_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4 isoform 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMI8_ECTSI) HSP 1 Score: 375 bits (964), Expect = 1.460e-108 Identity = 268/632 (42.41%), Postives = 327/632 (51.74%), Query Frame = 3 Query: 1026 LPNGWRKSKTKKGETLYVNDIEKITSWDPPVAIPPVATXXXXXXXPRHGSEGRPDHG----------RRPSTRSSXXXXXXXXAYDDGSRGSSKDNG-----EKSGRA--RRRPSNGSAG--VGIIDTSQRLQKSEKSSXXXR--HRSSSARDEHQEEPGSPLPQGWSMAFAKSGRPFYRNDHDQSTTWDRPTEASTRRPAARGXXXXXXXXXXXXXXXXXXXXXXXXDNSDRPAKATPSAPNGAS---DSPLPAGWSKAATKSGERYYRNDHDRTTTWDRPTGVAN---SLAVAGGEGGSRXXXXXXXXXXXXXXXXXXXXXXXARSSGREQPQEEEQPLPPGWSQAVAPDGKTFYQNHRDKSTSWDRPVAAPAAADPRYDAARPKTSRRNSTSGLRDGPPPPLPARTARGSKCVYQQXXXXXXXXXATALGAPAPGVFDPTMFGMPPGTQLPPQIQQAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGQSSPTGMSMGMPGVF-GGAPPKTALGKGMNFLMKRMTEPPTVKPPPKGYVGLDGGSFTNVGGLSASALKAPKKKKPQK----DEPSSVGDKAGNMFVKGLNKGINSGLGMVGAGDYYKVSMKKKKKGGLKFGGKAK-LGGS 2822 LP+GWR++ TK G Y N+ E +++WDPP + HGS G G R +S DDG++ S +G K+G R + +AG G+++ K R + S A+ E PLP GWS A+ K+G +YRN HD++TTWDRP + A G +S R + P A S + PLP GWSKA TK+GE YYRN HD+TTTWDRP V + +GG GG + A++SG + Q QPLPPGWS+A+APDGKTFY+NH DK+TSWDRPV A AD A+ PK +R + G PPPLP R A + APAP FDPTMFGMPPGTQLPPQIQQAM XXX PG P M MPG GG+P T LGKG++F+MKR+T P VKP P+GYVGLDGGSFTN GG + LKAPK +KP+K +EPSS+GDKAG FVKGLNKGINSGLGMVGAGDYYKV+MKKKKKGGL+FGGK K +GGS Sbjct: 275 LPDGWRRAHTKTGRLYYRNERENLSTWDPPTSA----------EGSSHGSVGSSSRGSADDVGRGRDRDRRDQSKTRPSTSTTNVDDGAQTSHLPHGGSKAYTKTGEVYYRNKHDKITAGDRPGLVEQPNGADAGGKDKNRGRGGEKKSVAQTSGSAEKEQPLPPGWSKAYTKTGEVYYRNKHDKTTTWDRPVLVEEPKGADAGGKDK---------------------SSGRGGEKKPPAETSGSAEKEQPLPPGWSKAYTKTGEVYYRNMHDKTTTWDRPVLVEEPNGGMDKSGGRGGEKKSP--------------------AQASGSAETQ---QPLPPGWSEAIAPDGKTFYRNHVDKTTSWDRPVLA--QADNTAAASGPKPRQRERAGDAKKGAPPPLPPRRASVGNTEVPHAQQPAAVPASPTAPAPAPAAFDPTMFGMPPGTQLPPQIQQAMMAQQQAXXXGQQRGQQ------------PGARMPM---MAMPGAAAGGSPAMTGLGKGLDFMMKRLTTRPVVKPRPQGYVGLDGGSFTNAGGFTEGDLKAPKIQKPKKPKKEEEPSSIGDKAGKAFVKGLNKGINSGLGMVGAGDYYKVNMKKKKKGGLRFGGKVKKMGGS 835
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: A0A6H5K7T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T1_9PHAE) HSP 1 Score: 326 bits (835), Expect = 2.660e-90 Identity = 266/699 (38.05%), Postives = 324/699 (46.35%), Query Frame = 3 Query: 1026 LPNGWRKSKTKKGETLYVNDIEKITSWDPPVAIPPVATXXXXXXXPRHGSEGRPDHGR------------------RPSTRSSXXXXXXXXAYDDGSRGSSKDNG-----EKSGRARRRPSNGSAGVG----IIDTSQRLQKS--EKSSXXXRHRSSSARDEHQEEPGSPLPQGWSMAFAKSGRPFYRNDHDQSTTWDRPT-------------------EASTRRPA-----ARGXXXXXXXXXXXXXXXXXXXXXXXXDNS---DRPAKATPSAPNGAS--------------------------DSPLPAGWSKAATKSGERYYRNDHDRTTTWDRPT-------GVANSLAVAGGEGGSRXXXXXXXXXXXXXXXXXXXXXXXARSSGREQPQEEEQPLPPGWSQAVAPDGKTFYQNHRDKSTSWDRPVAAPAAAD-PRYDAAR----PKTSRRNSTSGLRDGPPPPLPARTAR-GSKCVYQQXXXXXXXXXATALGAPAPGVFDPTMFGMPPGTQLPPQIQQAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGQSSPTGMSMGMPGVF-GGAPPKTALGKGMNFLMKRMTEPPTVKPPPKGYVGLDGGSFTNVGGLSASALKAPKKKKPQ----KDEPSSVGDKAGNMFVKGLNKGINSGLGMVGAGDYYKVSMKKKKKGGLKFGGKAKLGGS 2822 LP+GWR++ TK G Y N+ + + +WDPP + P HGS G G RPST + DDG++ S +G K+G R + G +++ + +KS R + A+ E PLP GWS A+ K+G +Y N HD+STTWDRP T+ PA A+ D + DRP PNGA + PLP GWSKA TK+GE YYRN +D+TTTWDRP G + GG GG + A++SG + Q QPL PGWS+A APDGKTFY NH DKSTSWDRPV A A + PR AA PK +R +++G PPPLP R A G+ + FDPTMFGMPPGTQLPPQIQQAM XXXX PG P M MPG GG+P T LGKG++F+MKRMT P VKP P+GYVGL+GGSFTNVGG + LK PK K ++EPSS+GD AG FVKGLNKGINSGLG+VGAGDYYKV M KKK GGL+FGGKA +GGS Sbjct: 273 LPDGWRRAYTKTGRLYYRNERQNLNTWDPPSSA----------EGPNHGSVGSSSRGSADGVGRNXXXXXXXXXXTRPSTSMTN--------VDDGAQTSPLHHGGSKAYTKTGEGYHRNKHDKTTAGDRPVLVEEPNGVDAGGMDKSRVRGREKKWLAQTSGSAEKEQPLPPGWSKAYTKTGEIYYHNKHDKSTTWDRPVLVEEPNGADAGGMDKSRVRGGETKPPAQTSGSAKKEQHLPPGWSKAYTKTGEVYYRNKYDKTTTWDRPVLVE--EPNGADAGGKNKSRGRGGETKPPAQTSGSAEKEQPLPPGWSKAYTKTGEVYYRNKNDKTTTWDRPVVVEGPNGGDTGGMDKGGGRGGEKKSP--------------------AQASGSAETQ---QPLAPGWSEATAPDGKTFYLNHADKSTSWDRPVLAQANNNAPREAAAAAASGPKARQRERAGDVKNGAPPPLPPRRAFVGNNTEASDAQQPAAVPASATXXXXXXAAFDPTMFGMPPGTQLPPQIQQAMMAQQQXXXXGQQRGQQ------------PGARMPM---MAMPGAAAGGSPVMTRLGKGLDFMMKRMTTRPVVKPRPQGYVGLNGGSFTNVGGFTEGDLKVPKIKXXXXXXXEEEPSSIGDMAGTAFVKGLNKGINSGLGLVGAGDYYKVKMTKKK-GGLQFGGKAMMGGS 912
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: D8LMG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG8_ECTSI) HSP 1 Score: 106 bits (265), Expect = 1.110e-23 Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 3 Query: 2442 MGMPGVF-GGAPPKTALGKGMNFLMKRMTEPPTVKPPPKGYVGLDGGSFTNVGGLSASALKAPKKKKPQKDEPSS-VGDKAGNMFVKG 2699 M MPG GG+P T LGKG++F+MKR+T P VKP P+GYVGLDGGSFTNVGG + LKAPK +KP+K+E SS +GDKAG FVKG Sbjct: 4 MAMPGAAAGGSPAMTELGKGLDFMMKRLTTRPVVKPRPQGYVGLDGGSFTNVGGFTEGGLKAPKIQKPKKEEESSSIGDKAGKAFVKG 91
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: D8LJ33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ33_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 3.200e-13 Identity = 109/442 (24.66%), Postives = 157/442 (35.52%), Query Frame = 3 Query: 807 LPEGWEAKERDGRTVYVNHVAKQTQWEKP-----------TMPGASSHDDLNDTNVEPSAAPAGYAAKVDGPIRRRSSSRNSEDLPNGWRKSKTKKGETLYVNDIEKITSWDPPVAIPPVATXXXXXXXPRHGSEGRPDHGRRPSTRSSXXXXXXXXAYDDGSRGSSKDNGEKSGRARRRPSNGSAGVGIIDTSQRLQKSEKSSXXXRHRSSSARDEHQEEPGSPLPQGWSMAFAKSGRPFYRNDHDQSTTWDRP--------------TEASTRRPAARGXXXXXXXXXXXXXXXXXXXXXXXXDNSDRPAKATPSAPNGASDSPLPAGWSKAATKSGERYYRNDHDRTTTWDRPTGVANSLAVAGGEGGSRXXXXXXXXXXXXXXXXXXXXXXXARSSGREQPQEEEQPLPPGWSQAVAPDGKTFYQNHRDKSTSWDRPV 2057 LP GWEAK + VY+NHV K TQWEKP T P A + + +P A P +R S ++E LP GW + G LY++ + K T++ P ++G D RR ++ SXXXXXXXX +G EP PLP W+ G+ FY N ++T+W+RP + ++ RR A + + + + + ++PLP GWS++ T GE +Y N ++ TTW RP G+ ++VA A S G Q PLP GW+ V G+ +Y NH DK+TSW+RP Sbjct: 9 LPPGWEAKRAGDQWVYLNHVTKTTQWEKPIVAKPIPPPVVTNPVARAQARIGSPAEQPRDRVIASGASDAPPPDQRGMSEDTESLPAGWERQFVD-GRVLYIDHVNKATTYTKP-------------------TKGADDGRRRSASGMSXXXXXXXXXXXXXXXXXXXXDGGG-----------------------------------------------EP--PLPDEWTAEKTADGKVFYINHKHKTTSWERPEXXXXXXXXXXAAFSSSNGRRQPAGPQHGSVNSARSTGSNDAKRAPFGSNNRGSFGSNRSAGSAGSSGETPLPPGWSESKTAGGEIFYVNHKEKKTTWVRPKGIPQ-ISVAE----EHPPQPRWGEEETTSFAPAYSSSGSAASGGLGGVQ----PLPVGWTSKVMATGEVYYVNHVDKTTSWERPT 372
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: D8LMG9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG9_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 2.190e-10 Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 3 Query: 1950 EEEQPLPPGWSQAVAPDGKTFYQNHRDKSTSWDRPVAAPAAADPRYDAARPKTSRRNSTSGLRDGPPPPLPARTARGSKCV 2192 E +QPLPPGWS+A+AP+GK +Y+NH D +TSWDRPV A A + AA + PPL R A KCV Sbjct: 22 ETQQPLPPGWSEAIAPEGKAYYRNHADNTTSWDRPVLAQADNNALIKAAAVAAASGPKPRQRERACLPPLRPRRASVGKCV 102
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: UPI001486E513 (transcriptional coactivator YAP1 isoform X1 n=2 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI001486E513) HSP 1 Score: 72.8 bits (177), Expect = 2.660e-9 Identity = 51/161 (31.68%), Postives = 71/161 (44.10%), Query Frame = 3 Query: 1701 DSPLPAGWSKAATKSGERYYRNDHDRTTTWDRPT-GVANSLAVAGGEGGSRXXXXXXXXXXXXXXXXXXXXXXXARSSGREQPQEEEQPLPPGWSQAVAPDGKTFYQNHRDKSTSWDRPVAAPAAADPRYDAARPKTSRRNSTSGLRDGPPPPLPARTARG 2180 D PLPAGW A T SG+RY+ N +D+TTTW P + + L V +SG PLP GW QA+ PDG+ +Y NH++K+TSW DPR D R ++ ++ PPPL ++ +G Sbjct: 155 DVPLPAGWEMAKTSSGQRYFLNHNDQTTTWQDPRKAMLSQLNVPA------------------PASPAVPQTLMNSASG---------PLPEGWEQAMTPDGEVYYINHKNKTTSW---------LDPRLDPRFAMNQRITQSAPVKQ--PPPLAPQSPQG 277
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: A0A401NPS9_SCYTO (Uncharacterized protein (Fragment) n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401NPS9_SCYTO) HSP 1 Score: 72.4 bits (176), Expect = 3.420e-9 Identity = 47/132 (35.61%), Postives = 57/132 (43.18%), Query Frame = 3 Query: 1701 DSPLPAGWSKAATKSGERYYRNDHDRTTTWD---RPTGVANSLAVAGGEGGSRXXXXXXXXXXXXXXXXXXXXXXXARSSGREQPQEEEQPLPPGWSQAVAPDGKTFYQNHRDKSTSWDRPVAAPAAADPRY 2087 D PLP GW A T SG+RYY N ++TTTW +P V NS A SSG PLP GW Q + PDG+ +Y NH++K+TSW P DPRY Sbjct: 159 DVPLPPGWEMAKTPSGQRYYLNHIEQTTTWQDPRKPMSVLNSTTPAS-------------------PVSLQQSLMNTTSSG---------PLPDGWEQGITPDGEIYYINHKNKTTSWLDP-----RLDPRY 257
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: A0A401SWT8_CHIPU (Uncharacterized protein n=4 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SWT8_CHIPU) HSP 1 Score: 72.4 bits (176), Expect = 3.430e-9 Identity = 47/132 (35.61%), Postives = 57/132 (43.18%), Query Frame = 3 Query: 1701 DSPLPAGWSKAATKSGERYYRNDHDRTTTWD---RPTGVANSLAVAGGEGGSRXXXXXXXXXXXXXXXXXXXXXXXARSSGREQPQEEEQPLPPGWSQAVAPDGKTFYQNHRDKSTSWDRPVAAPAAADPRY 2087 D PLP GW A T SG+RYY N ++TTTW +P V NS A SSG PLP GW Q + PDG+ +Y NH++K+TSW P DPRY Sbjct: 163 DVPLPPGWEMAKTPSGQRYYLNHIEQTTTWQDPRKPMSVLNSTTPAS-------------------TVSLQQNLMNTTSSG---------PLPDGWEQGITPDGEIYYINHKNKTTSWLDP-----RLDPRY 261
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: UPI0003D7076E (transcriptional coactivator YAP1 isoform X6 n=2 Tax=Mus TaxID=10088 RepID=UPI0003D7076E) HSP 1 Score: 72.0 bits (175), Expect = 4.430e-9 Identity = 51/161 (31.68%), Postives = 68/161 (42.24%), Query Frame = 3 Query: 1701 DSPLPAGWSKAATKSGERYYRNDHDRTTTWDRPT-GVANSLAVAGGEGGSRXXXXXXXXXXXXXXXXXXXXXXXARSSGREQPQEEEQPLPPGWSQAVAPDGKTFYQNHRDKSTSWDRPVAAPAAADPRYDAARPKTSRRNSTSGLRDGPPPPLPARTARG 2180 D PLPAGW A T SG+RY+ N +D+TTTW P + + L V +SG PLP GW QA+ DG+ +Y NH++K+TSW DPR D K + T PPPL ++ +G Sbjct: 155 DVPLPAGWEMAKTSSGQRYFLNHNDQTTTWQDPRKAMLSQLNVPA------------------PASPAVPQTLMNSASG---------PLPDGWEQAMTQDGEVYYINHKNKTTSW---------LDPRLDPRFGKAMNQRITQSAPVKQPPPLAPQSPQG 279
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Match: UPI00140339E8 (transcriptional coactivator YAP1 isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI00140339E8) HSP 1 Score: 71.2 bits (173), Expect = 7.500e-9 Identity = 46/132 (34.85%), Postives = 57/132 (43.18%), Query Frame = 3 Query: 1701 DSPLPAGWSKAATKSGERYYRNDHDRTTTWD---RPTGVANSLAVAGGEGGSRXXXXXXXXXXXXXXXXXXXXXXXARSSGREQPQEEEQPLPPGWSQAVAPDGKTFYQNHRDKSTSWDRPVAAPAAADPRY 2087 D PLP GW A T SG+RYY N ++TTTW +P V NS A +SG PLP GW Q + PDG+ +Y NH++K+TSW P DPRY Sbjct: 144 DVPLPPGWEMAKTPSGQRYYLNHIEQTTTWQDPRKPMSVINSATSAS-------------------PVPMQQNVMNTTASG---------PLPDGWEQGITPDGEIYYINHKNKTTSWLDP-----RLDPRY 242 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1214.1785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1214.1785.1 >prot_L-elsbetiae_contig1214.1785.1 ID=prot_L-elsbetiae_contig1214.1785.1|Name=mRNA_L-elsbetiae_contig1214.1785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=725bp MFKRALKKRTEVLPEGWEAKERDGRTVYVNHVAKQTQWEKPTMPGASSHDback to top mRNA from alignment at L-elsbetiae_contig1214:11216..27585+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1214.1785.1 ID=mRNA_L-elsbetiae_contig1214.1785.1|Name=mRNA_L-elsbetiae_contig1214.1785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=16370bp|location=Sequence derived from alignment at L-elsbetiae_contig1214:11216..27585+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1214:11216..27585+ >mRNA_L-elsbetiae_contig1214.1785.1 ID=mRNA_L-elsbetiae_contig1214.1785.1|Name=mRNA_L-elsbetiae_contig1214.1785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4350bp|location=Sequence derived from alignment at L-elsbetiae_contig1214:11216..27585+ (Laminarionema elsbetiae ELsaHSoW15)back to top |