mRNA_L-elsbetiae_contig1214.1783.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1214.1783.1
Unique NamemRNA_L-elsbetiae_contig1214.1783.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1214.1783.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 3.620e-63
Identity = 117/201 (58.21%), Postives = 142/201 (70.65%), Query Frame = 2
Query:   11 SGPCCTPRLTFWITVCLGWVVWAFALAASVDDDW--IEDTPVAAGDEDILDGCDQIDDATDFCKQYKAFTAMQFVAVLLVSFAMVVFMATFFRPATGGGCCTVKTVAFIGTGLMAGFALFQMLAFVLVIVIEKDLDD------GTFDAKLGGTFAVAVIACILGVVHAAATYTFARSAGDGLFYRCSHECMAMNNDTNAAV 589
            SGPCCTPRLTFWI+  LGWV+W FA+AAS DD W  I+   + AGDEDILD CD  DD    C  YKAFTAMQF+A ++VS +MV+F    FRPA G  CC+VK++A     LM  FA F+MLAFVL+IVIEK+LD       G  +A LG TF +AV+A +LGVV A +  TFARS+GDG F++C +ECMAMNN  NAA 
Sbjct:   68 SGPCCTPRLTFWISCALGWVIWVFAVAASADDKWAKIDGFDIGAGDEDILDDCDSSDDV---CSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGEFNTGFGFGEADLGATFGLAVVAVVLGVVQAVSVLTFARSSGDGPFFKCLNECMAMNNAPNAAA 265          
BLAST of mRNA_L-elsbetiae_contig1214.1783.1 vs. uniprot
Match: A0A6H5JD07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.510e-5
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = 2
Query:   41 FWITVCLGWV-VWAFALAASVDDDWIEDTPVAAGDEDILDGCDQIDDATDFCKQYKAFTAMQFVAVLLVSFAMVVFMATFFRPATGGGCCTVKTVAFIGTGLMAGFALFQMLAF 379
            +WI + +  +  W FA+AA+ DD WI D   A     + + CD      DFC  YKA TA Q++A ++VS  +V+ +   F PA   G    K    +G  L   FA+F++LAF
Sbjct:    9 YWIVLFVTTIFTWIFAVAAAADDAWIADAYEAG----LGESCD----GYDFCGLYKAATAFQYLATIVVSVVLVMVVVAAFTPAPVTG----KLGLAVGIMLFV-FAVFELLAF 109          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1214.1783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJK8_9PHAE3.620e-6358.21WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A6H5JD07_9PHAE1.510e-535.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1214contigL-elsbetiae_contig1214:106..7362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-05_002920.1
Exons5
Model size2953
Cds size495
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815412.3677118-UTR-L-elsbetiae_contig1214:105..1961622815412.3677118-UTR-L-elsbetiae_contig1214:105..196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 106..196 +
1691682886.5210474-UTR-L-elsbetiae_contig1214:105..1961691682886.5210474-UTR-L-elsbetiae_contig1214:105..196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 106..196 +
1622815412.378018-UTR-L-elsbetiae_contig1214:1353..14621622815412.378018-UTR-L-elsbetiae_contig1214:1353..1462Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 1354..1462 +
1691682886.5325167-UTR-L-elsbetiae_contig1214:1353..14621691682886.5325167-UTR-L-elsbetiae_contig1214:1353..1462Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 1354..1462 +
1622815412.3873463-UTR-L-elsbetiae_contig1214:3213..32301622815412.3873463-UTR-L-elsbetiae_contig1214:3213..3230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 3214..3230 +
1691682886.5425456-UTR-L-elsbetiae_contig1214:3213..32301691682886.5425456-UTR-L-elsbetiae_contig1214:3213..3230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 3214..3230 +
1622815412.4255586-UTR-L-elsbetiae_contig1214:5121..73621622815412.4255586-UTR-L-elsbetiae_contig1214:5121..7362Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 5122..7362 +
1691682886.587019-UTR-L-elsbetiae_contig1214:5121..73621691682886.587019-UTR-L-elsbetiae_contig1214:5121..7362Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1214 5122..7362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815412.3966653-CDS-L-elsbetiae_contig1214:3230..34261622815412.3966653-CDS-L-elsbetiae_contig1214:3230..3426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 3231..3426 +
1691682886.551566-CDS-L-elsbetiae_contig1214:3230..34261691682886.551566-CDS-L-elsbetiae_contig1214:3230..3426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 3231..3426 +
1622815412.4084134-CDS-L-elsbetiae_contig1214:4460..46811622815412.4084134-CDS-L-elsbetiae_contig1214:4460..4681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 4461..4681 +
1691682886.5680459-CDS-L-elsbetiae_contig1214:4460..46811691682886.5680459-CDS-L-elsbetiae_contig1214:4460..4681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 4461..4681 +
1622815412.416942-CDS-L-elsbetiae_contig1214:5043..51211622815412.416942-CDS-L-elsbetiae_contig1214:5043..5121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 5044..5121 +
1691682886.578596-CDS-L-elsbetiae_contig1214:5043..51211691682886.578596-CDS-L-elsbetiae_contig1214:5043..5121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1214 5044..5121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1214.1783.1prot_L-elsbetiae_contig1214.1783.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1214 3231..5121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1214.1783.1

>prot_L-elsbetiae_contig1214.1783.1 ID=prot_L-elsbetiae_contig1214.1783.1|Name=mRNA_L-elsbetiae_contig1214.1783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MQFVAVLLVSFAMVVFMATFFRPATGGGCCTVKTVAFIGTGLMAGFALFQ
MLAFVLVIVIEKDLDDGTFDAKLGGTFAVAVIACILGVVHAAATYTFARS
AGDGLFYRCSHECMAMNNDTNAAVGSGGGGAWTNSQQQPVPPAAGATVPP
PAPAAPPEPASAAV*
back to top

mRNA from alignment at L-elsbetiae_contig1214:106..7362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1214.1783.1 ID=mRNA_L-elsbetiae_contig1214.1783.1|Name=mRNA_L-elsbetiae_contig1214.1783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7257bp|location=Sequence derived from alignment at L-elsbetiae_contig1214:106..7362+ (Laminarionema elsbetiae ELsaHSoW15)
GACCAAGCCATCGGGTCCTTGCTGCACGCCGAGACTTACGTTTTGGATTA CCGTCTGCCTGGGCTGGGTGGTGTGGGCTTTCGCTTTGGCGGTGAGAACC ATGGCGCGTGCATCTACCGATGATAACCGCGCACCCCCTACCCCGCACGA AGCGCATTACGGGGAGACAGCAACATATTGCCTCGGCGCACTGAGGCCGA CCATTTCAGATAGAGCAGAAAAAACGACAGTGTAGCACCAACTTTTGAGA ACGATGATGCTCGAAACGCTTTAGTTGGTTGAGTCAACACGTTCAACGCG CCATAAGTCGCAGCCAATCTCGGAGCAGGTTTTCGCGTCTCTTGAGTGAG CTGTGGAAATGTTAATGTTTAGTTTTTATGTTTTCAAGTCATAGGTGACG TTCACAGCCAACCATGGGCCCAAGCTTTTACATGCGTGCTTTGAGTTGTT CGCAAGAGGTGTATGTACGCGGTACAGCAATATTTCTGGTTTGTGTCGGG ATGAAAAAAATACCTCCCATGATATAGTCTAGATATTGAAATCTAGTTTG GATGCCGGTCGCAGAGTGAAGAGGCGATTGTAAAGAGCTGACTCAAGGCT CTGATATTTTATCGAGTGAGAGGCACGCGGCTCTCTGCGGGGGCATAGTG TGCGCACATGTACCCACGTGAGCACAAAACATCGGCGTTACCCCCAAAGA TCCTGTCAATATATCTCGTGCCTAGTACTACAACCTACTACTGTTGTAAC AATCTTTAGTTCGATTTGGTCCGCTTTTTGCAGTGGGCTGATTTGTTTTG GTTCCCACACTCTCTCGCCTGTGTTTCTTTTTTCCCTCGCGCCAGAAGCA GTCCCCTCCTGACACAGGTAGGTACTAATCTGGTGCAGATCTTGAAATTC CCAAGGCAGTACAATAGAAGGCGATAGCTTGGTCGATTCGTGTCTAATCA TTCTCCAGTATTATTTAATTTAATGGGACATATATCACGCCTACATTAGG CCCCACACCCAGAAATGTACTCCTCAAGCCCACCCCGTGTGAAAGTTTAT TTCCACTCAACATATGTGACCAGATCTACAAGGAGTGACAAAGATACCTT TCGCGAATAGCGCACCGCGTGACAAATGTTTTTTGAATTCAAAAAAGGTT TTGTCTTTAACACGGTTGTGGCCCATATAATGTATCACTCACGGTATTTA CGCCTTTGTGACGGAACTGATGTGTGCTGTTGGTCGCATTCTACGCAGGC GTCCGTGGACGATGATTGGATCGAAGACACCCCAGTCGCTGCCGGCGATG AAGACATCCTGGACGGCTGCGACCAGATCGACGACGCGACTGATTTTTGT AAACAATGTGAGAGCACAATTTTGTCGACGCACACGGTGGAGTGTGTGTA CCGCAGTCGTCTCTAAGTTCCCTCCAAGGAGGGGATTTTCTTTTTGTGAA CACAACAATCCCCCCGGGGAGAACTCAGAGAAATCATGCTTCCAGGCCGA AAATGGGATGACGGGGGGGGAGGGGGGTTCTTAGAGGCGAGTACGGTATG TATTTATGCGGTAGGCAATACATATACATATACATACTAGTGCTACAACG CGCAGCTGTGGGCCACATGACAGACAAGCTCGAGAAGCGAACTCTGTGAG GACCTGCGAGTCAGGGTTTCTCTTCTGCAATAGGGCACGCGGGCAGGCTA CACGCTAACGTGGCGGCTCTTGGAAATCTCCACGCAGATCGTTTATGGTA CAGATCGATTTTGACTTTTGAGCATTCTGAGTGGACCCTTTGACATCTCG CATTTGTTTTCCATACAACAACGTATTGCAATGCATACTCTCAAATGCAG CGAGTTCTTCGTGTGCAGTTGCTCGAGAGGCTTTACGAAACCGAGCTCGA GAATCTGCTAAACCTGCGGGGGGGAGGGGCTCAGGTCGCATTCAGTAGGG GGGAAACTGGTGTTGGCACGTATGCGTTGTACTTGTCCGCGTTTTAAGGG TATACTTGTACTTCTACAAGGCACAGCGGTATGTTTTCATACATACGTAT CATCACAATGCCTGAGGCGCGACACGTGGAGTGATGCATAGGATGGGATG TATACACGACTTGTGCATAAATGTATGGGGTATACGAAATCGTCGTCGCC GCAGTCGTTGCTGGTGCCGCTCTTTGCGAACAAAGCCTTCGGAAACGATG TAGCTTATTTATGTATCACTGTTGAGTCCGGCTGCCGATGGCGATCGGCT GCCTTTCGTTCAGGGACAAATACGGAGATCGCGCTGTGTGCGGCTAAATC CAGGGATATGCCACTGTACTGCAACACATGGCATTGTTGCGTGGGTCACT CGAGTTTTTCACACCACGTATAGAAGCCGAGATCAAACCATTAGGCCAGT CAGCGCTGGCTGGTCTAACAGTTTCATTTTGGCTTCTTTATTGTACATAG CACTACGCACCCCGCAACAATAGTACAAGCCTCCGTGGGCGTACACAATT TCGTTTGCGGGCAAGGCTGCCAAGGAGAGTATGCTAAATGCTCGATCAAG GTCACTAACGCAGACGCATTGGAAAGGGCTTGGGGCTTTGTCTTTTCCGA TCGCGGGCCGCACTCGCGATGCACGTGCGTAAATAATAGATGCCTGTGCC AACACACGACCTGGTGCTTGCACCTCGCCCTCAACGCGGCTAAAGTGAAT TGCAGTACATTTATTATTTTTTCCCTCCCATTATTGGCTTGTACGTCGTC TGCCCCACTGGCCCCCTTCCTCAACTACAACTAGCTAGACGACCCAACCG GGGTCACACCGGTAGGGGGGGGTGGATCCCTTCCTGCGGTGCCTGCCTGT TGTGTTTTTATCGCGAGCAGGGTTCATTCAGCACTCCCCGCCCTCGTCAT GAAGTCGAAGTAATATTTACTAACGAAATCGCTTTCGAAGTTTCCAGGAA CGAATGTGAGAAAAAAAAACTCGCCTCACCGGGGCTCGAGCCCATTACCT GGTTCTTAGAAGGTTGCGTGGATACCAACTAGACCACCGGGGCGACCGGT ATATACCCCTCCCTGCAACTGTTGTTTCGCTCGGCCGCGTGCTGCTGCCG CGTCGCAGACAAAGCTTTCACGGCCATGCAGTTCGTGGCGGTCCTGCTGG TATCCTTCGCGATGGTCGTGTTCATGGCGACGTTCTTCCGACCCGCGACG GGGGGCGGCTGCTGCACCGTCAAAACCGTGGCCTTCATCGGCACCGGCCT CATGGCCGGCTTCGCGCTGTTCCAGATGCTGGCGTTCGTACTGGTGATCG TCATCGAAAAAGATCTTGATGGTGAGCGGGCTGTGCAGAGGCGCTGGCGT GAAGAACCCGATCTGGATTTGCTGCTGCAGTCGGCTTTTGGCCGTGCTTT GTAGTATGTATTTTTGTGCGCGTGTAAACGTTTTTCGCGTTTTTAAGGGT GTAACGATGTACTTCATGCGTGTGTGTAGGAGTGTTTTTACCCTTGTTCT CTTTGACCCATGCGTATTTGCTGCAATTGTTTCACGTTTCGCCCATCCGG TTTCCAGTTAGTTTGTGCTGCGCGCTTGAGATGCAAGATATATGATGCCC CCCCGTTTTGTGTAGCTTGGGGTTGTAGAAGGTGCTGATCTGAGATCGGA AGTTTCTAGGCTGCAACAACGACAACACTTCGGTTTTCGGGTCTGGTAAC ACTTTGCTCAACCGTTATTTGACGGGCGAAGTCGCTATTCCGTGAGCTAG TCCTAGCAGGGTCGCTGATTCCCCTCAGACTGAACCGTTCCGTGGCGACG AGTCACGGGCAGGCGGACGAAAGTGAAACAAGAAGGGCGTCACTGCCGAG GGGATGTAGTACCAAACACTTTGGGGAAGCGGGTATGTAGAGGGTCTTAC TGGCGACGCGTTCTCAAAAACACTGATGGAGTGCACCGCGGGTAATATAT TTTGCTGGAGTAACAGATCCTGATACCTCTGGCACTCTTCTGCATTTGTG GTGTGAATTAATTATCCCCCATTTACGACGCCAACTGTTTTTCCAGGGCG GTGATTTGGACCTTATTTATTCATGCACCCCCTGCACCATTTACAACTCT TCAATCCATGCTTACTGTCACCAAGTTAATGGGGTCAGTTCATGGGGTTC TTAAGTAGGAATTGGGATTGCGCGGGGGTCCAAAAAATCGGGAATTTTCT CACATGCAGACAGTAAGTATCCCCCAAAGCCAGGTTAGCGAAACAGCCGG TCCATAGACGCGATAGGTTTTAAAGAGTAAAAAAATCGGACATGTGGCCA CCTCTAACGTTTGTAAACGCTGGCCCTGCTCAACTCTTCACGCGTCGTTC GGCAGATGGCACGTTTGATGCCAAGCTCGGAGGTACGTTCGCCGTGGCAG TCATCGCCTGCATCCTGGGCGTGGTGCACGCCGCGGCGACCTATACGTTC GCTCGCAGCGCGGGGGACGGGCTGTTCTACAGGTGCTCCCACGAGTGCAT GGCCATGAACAACGATACCAACGCCGCCGTCGGCAGCGGTGGCGGTGGCG CGTGGACCAACAGCCAGCAACAGCCGGTGCGTTGAAGCTTTTCCCTGTGC GGCAAAAGATTAGGCACCAACGATGATACAGATACATAGCTTGAAGGGAG AGCTGTGAACAAGCATTCGGCCTCTACATAAGTGGAAAATAACTTATGCC TCTAATAGGTGAAAAATAAGTTATGCCTCTGCATGGAAAATAAGTTATTA TTTGTCGATGCCGTATGGAGCGTGGTTTGCCCCACAAACCCTGACTTGGA CGGCCGAACTTTTTGTTCGCACCAACATCTTGAAAGCGTCGAGGACATGT TTCAAAGCCCCCCTCCTCCCTAAACCTAATCCTAACCCGAACACCCCCAC ACGCCCACCCTTGTGCCTCCCCTTCCCTTTTCCCGCAGGTTCCGCCTGCG GCAGGCGCCACGGTGCCCCCACCAGCACCGGCGGCGCCCCCGGAACCGGC GAGTGCGGCTGTGTAACTCCTCAAGTATGTCCTCGAAGGCCAGTCTCGGG GGGGCGCTTGAAGGCCCCAGCGCCACCAGTAGATAACAACACCAGAACGT CTACGAGAGCTTTTGGGTGCTAAGATATAGTCCAGAGTATATATACTTCG TATGTATTTTCCCCTCTCCCAAGATTCCAAAAATGTTCCGCGGACCAATC GAACCGGAGAAGATGCGGTTGGAAAAGATCATCCGCTCTTGTAAACACTT GCGTGTTCGGGGTCTGAAGTTGGCTTTTAGGTGGGAGAAATGTTTGGAAG GCGACGGCCACATGATCAACGGCTCTGTGTCTTGTGGTTCTTTTGGTTCG ATGCAGGCCCGCCCCGCTGGGTCCAGCCAGCTTAGTGCCCTTAACCAACC CATAGAGCTCTATGGTTGCTTGTATTCCGTAGAGCTACGGTGTGTTGCAC CCACGCTTGTTTGTTTTTTTTCATACCGGAGCCAGGTTTAAACGCGTTTA CGTACATACATGGGTACTGCCGTTGGGGTCAGATCCATCCGCATCGAGGA CGGATCTCCCAGGCTCAAAGTACCTTCTTTACTAGATTGTCGACCGGACG ATGGATGGGTTTTGTGTTCACGGAAAGGTATTGGGGTGAGTTCCGAAGGA GCTAATTGTCTAAGACCTAAGGCAGGAAACCTCCCGGCACAACCCACTCA CCTTTTCACCTGACTGCTTTTAGGTGTGTATACGGCCCCGTTATTCCCTT TTTTTCTTCTTCTCCGGTCTTTCTTGGTTGCTCCCAGGGCACACCGGCGA ATGAAGTGAAAGAGTAGGCAGCGCAGAAACTGACTTGATGTTGCAGATTG GACGAGGTTGTTAGGATCTACCTCTTCGTAGAAAAAGTACAGAAGTGTTT CGACATAAATTCCTTCGCTAAAAAGGATCTAGATGGGTGTTGTTTTTTGC TGCGTTTTGACGAAGGAAATAGATATGTTGTTGTTCTCTTCACATTAAAA ACCCTTTCGATCTCTCCATCCAATACCTCCGTACGTCCGTACTAATCAAA CACTCGACGCGGTCGATTCCTGTGGTCACAGGCTAACTTACACTCTGTAT GTAGTCCCTTTTATTCCCCAAGTTCAGATTCTAGTATGTATGCCAACAAC GCCTGGTTAGCGTTTTGCCTGTATTCGTATTTAGGCCTCACGCGGCTCTT TGGTTTACTCCTGCCGAGTGGTTTGACGTGCGTTAATGTTTTCATCCCTG GTGTTGCAGTTTCGTAAGTCGTTTGACTTGACTGATTCCGAGGTGGTCGG TAGCGCGCCGTTGGGGCAGGCGCATCTAGACTATATATGTATAATAGCAT GCATTATTTTGTTGTGGACATCCCGTGCTGGATGTTTTTGTCTTCAGCCA GTCATCGTCAAAATAATCTATTTTTTTAAGTGCACACCCTTTCTTTCCCT CCCCCGAGACTAGTGACAGGTGTAGCGTAGGCGTCGTTGACCGAGGTCTG AGAGGCCCCTAGATCAGCTTGTGTTGTTGTGTATTCCCATCTTTTGGCGG GGTGCATCGGCGCATGGCAAAGTAGTTCTTGGGACCACTGCCCGTTGAGA TGGGTATGTATGCCTGGCCAAAAGAGGACTTGGATGCAGGTATGTTTTGT GTTGGGGAGCTTATCTGCATCCAGCGCATCGAAAGGTGGGCTGGGGAGCT TATCTGAAAGAGTTTGGATTCGCCCCTCAGAGGGGGCGAAGACGAGAAGA CCGCTCGTAGCTTTCGCGATGCGGATAACCAATAACCACCGCGGACGGGG CATATATATATTGATCGGGAGGCTATAATTCCTTCGTTTGTAGGAAAGGC ATCCATTATTGTGCTTGAGAACAAATCAGGAAGCATTTGCGAGGAAGGGT TCAATAGCAGGGGAGATGGCATATAAGAAGGGGGGAGCTTAATTTTGTCA CTGGTGATAACGGTGGAGGAAACTACTGTTGTACATACTAGGTGAATCAG GGCATATCAAATGTGTGCACTCATTGTTCAAGTATTTTGCTCGCTTGAAT GCGCGCGTGAGTATGCGTGGGCATGTATGCGCATTGCCCCGCTTACTACG CTACAAACAAAGGTCTGTTATTATTATTTCGTTTGCCTATTTATTAACAA AGGTCTGTTATTATTATTTCGTTTGCCTATTGACAACAGATGTTTTCAAT CAAAAACTCGCCCCAATGTATTATCACATGCATCGTCCATTTGTGCTTGA AATCGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1214:106..7362+

>mRNA_L-elsbetiae_contig1214.1783.1 ID=mRNA_L-elsbetiae_contig1214.1783.1|Name=mRNA_L-elsbetiae_contig1214.1783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig1214:106..7362+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGTTCGTGGCGGTCCTGCTGGTATCCTTCGCGATGGTCGTGTTCAT
GGCGACGTTCTTCCGACCCGCGACGGGGGGCGGCTGCTGCACCGTCAAAA
CCGTGGCCTTCATCGGCACCGGCCTCATGGCCGGCTTCGCGCTGTTCCAG
ATGCTGGCGTTCGTACTGGTGATCGTCATCGAAAAAGATCTTGATGATGC
AGTTCGTGGCGGTCCTGCTGGTATCCTTCGCGATGGTCGTGTTCATGGCG
ACGTTCTTCCGACCCGCGACGGGGGGCGGCTGCTGCACCGTCAAAACCGT
GGCCTTCATCGGCACCGGCCTCATGGCCGGCTTCGCGCTGTTCCAGATGC
TGGCGTTCGTACTGGTGATCGTCATCGAAAAAGATCTTGATGATGGCACG
TTTGATGCCAAGCTCGGAGGTACGTTCGCCGTGGCAGTCATCGCCTGCAT
CCTGGGCGTGGTGCACGCCGCGGCGACCTATACGTTCGCTCGCAGCGCGG
GGGACGGGCTGTTCTACAGGTGCTCCCACGAGTGCATGGCCATGAACAAC
GATACCAACGCCGCCGTCGGCAGCGGTGGCGGTGGCGCGTGGACCAACAG
CCAGCAACAGCCGATGGCACGTTTGATGCCAAGCTCGGAGGTACGTTCGC
CGTGGCAGTCATCGCCTGCATCCTGGGCGTGGTGCACGCCGCGGCGACCT
ATACGTTCGCTCGCAGCGCGGGGGACGGGCTGTTCTACAGGTGCTCCCAC
GAGTGCATGGCCATGAACAACGATACCAACGCCGCCGTCGGCAGCGGTGG
CGGTGGCGCGTGGACCAACAGCCAGCAACAGCCGGTTCCGCCTGCGGCAG
GCGCCACGGTGCCCCCACCAGCACCGGCGGCGCCCCCGGAACCGGCGAGT
GCGGCTGTGTAAGTTCCGCCTGCGGCAGGCGCCACGGTGCCCCCACCAGC
ACCGGCGGCGCCCCCGGAACCGGCGAGTGCGGCTGTGTAA
back to top