mRNA_L-elsbetiae_contig1213.1779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1213.1779.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE) HSP 1 Score: 255 bits (652), Expect = 7.480e-75 Identity = 147/350 (42.00%), Postives = 198/350 (56.57%), Query Frame = 3
Query: 288 RSCTKDELLPHSTSS-SSISPEWSDPNAA--EDPYGCDCSFYRARYFCRSREAGQGYRQWLPRAVSEGICNSVTRSQLLE--TPFPPMFKVLIYGNSHLRQVVEALMCIVSDKVRAKRVYYSEVLNPG---VYKVRGDVPCRFSSD----KDWATLVHHHCV---PEEAAGASGQRCADDHGEFFMTNGAIVHYYFSGGDENKNIGDALGFHNNATWSHYDAVFANSGNRPFMSEESVLISALELHRAGVPFFWLSEYDGQGDINGWEVSS-VSRFHESGARYVDIRSMTHGLRSFTKGAMESVGQDHEKKVEDDRFEKYVGGDPHFCLPGPPDEMALLLLKLMWAVHQE 1289
R CT DELLP S S++S EWS + PYGCDC+F +ARYFC + +G Y +W+PRAV+ G C S TR ++ PFPP KVL YGNSH+RQ +EA++C+ V +KR+ + N +V GD PCR S KD TL++ C+ +NGA+VH+YF+ DE+K I DAL H+ S+Y AVFAN GN+P + ++VL +A+EL AGVPFFWLS Y+G+GD W + F ESGA++V + + GL S T+ +E V DPHFC+PGPPDE+ +LLLKL+WA+H E
Sbjct: 120 RYCTVDELLPLKKSPHSALSSEWSQGQGGVWKPPYGCDCAFSKARYFCPNLGSGV-YPRWVPRAVTRGDCRSATREEMSSRGAPFPPDSKVLFYGNSHMRQTLEAILCLFQKDVVSKRLRFVSATNANETAYLEVPGDTPCRACSVWTFFKD--TLLNSGCIGXXXXXXXXXXXXXXXXXXXXXXXSNGAVVHFYFANHDEDKRITDALAPHHKEDLSYYTAVFANPGNKPSVEADAVLDAAVELQAAGVPFFWLSTYEGKGDPQRWNSRQRETDFWESGAKFVRVFDIVQGLHSLTRKVVERT----------------VENDPHFCMPGPPDEVGILLLKLLWALHHE 450
BLAST of mRNA_L-elsbetiae_contig1213.1779.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE) HSP 1 Score: 208 bits (529), Expect = 2.190e-56 Identity = 126/347 (36.31%), Postives = 171/347 (49.28%), Query Frame = 3
Query: 288 RSCTKDELLP-HSTSSSS-------ISPEWSDPNAAEDPYGCDCSFYRARYFCRSREAGQGYRQWLPRAVSEGICNSVTRSQLLETPFPPMFKVLIYGNSHLRQVVEALMCIVSDKVRAKR---VYYSEVLNPGVYKVRGDVPCR--FSSDKDWATLVHHHCVPEEAAGASGQRCADDHGEFFMTNGAIVHYYFSGGDENKNIGDALGFHNNATWSHYDAVFANSGNRPFMSEESVLISALELHRAGVPFFWLSEYDGQGDINGWEVSSVSRFHESGARYVDIRSMTHGLRSFTKGAMESVGQDHEKKVEDDRFEKYVGGDPHFCLPGPPDEMALLLLKLMWAVHQE 1289
R+CT D+L+P H +S W + P+ C C +A YFC + G GY +W + G C RS L P PP F+VL YGNSHLRQVVE ++C S +R++ V L P V D+ CR +S K L+ H C+ EEA + C D+ F NGA +HY+F+ +ENK DAL + +S YD V N GN P M VL A L GV FW S Y+G+GD+ W + F +SGAR+V + M L+ TKG +E +PHFC+PGPP+E+ +LLL++ WAV+ E
Sbjct: 91 RACTVDDLVPPHGNYEDGGGDGGYDLSGMWDKSSMVAPPFDCTCRTLKASYFCPNLGTG-GYPKW----NTSGACERRERSALQNEPLPPAFRVLFYGNSHLRQVVEGIVCAYSTSIRSRCLRVVVGGGSLAPEDALVDEDLQCRGCVNSHKQRNMLLEHECISEEAKKEACS-CDDNESVFEFDNGAAIHYHFAHKEENKRFEDALKYRG-TEYSFYDVVVGNLGNDPRMEVSEVLRVANLLKEEGVTLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGEN------------------NPHFCMPGPPNEIGILLLEMAWAVYAE 412
BLAST of mRNA_L-elsbetiae_contig1213.1779.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI) HSP 1 Score: 204 bits (520), Expect = 1.390e-55 Identity = 124/329 (37.69%), Postives = 163/329 (49.54%), Query Frame = 3
Query: 339 ISPEWSDPNAAEDPYGCDCS-------FYRARYFCRSREAGQGYRQWLPRAVSEGICNSVTRSQLLETPFPPMFKVLIYGNSHLRQVVEALMCIVSDKVRAKR---VYYSEVLNPGVYKVRGDVPCRFS--SDKDWATLVHHHCVPEEAAGASGQRCADDHGEFFMTNGAIVHYYFSGGDENKNIGDALGFHNNATWSHYDAVFANSGNRPFMSEESVLISALELHRAGVPFFWLSEYDGQGDINGWEVSSVSRFHESGARYVDIRSMTHGLRSFTKGAMESVGQDHEKKVEDDRFEKYVGGDPHFCLPGPPDEMALLLLKLMWAVHQE 1289
+S W + P+ C CS A YFC + G GY +W + G C RS L P PP F+VL YGNSHLRQVVE ++C S +R++ V E L V D+ CR S K TL+ H C+ E+A RC DD F NGA +HY+F+ +ENK DAL + +S YDAV N GN P M VL A L GVP FW S Y+G+GD+ W + F +SGAR+V + M L+ TKG +E +PHFC+PGPP+E+ +LLL++ WAV+ E
Sbjct: 113 LSGMWDKSSMVAPPFDCTCSGSGRAGRALNASYFCPNLGTG-GYPKW----STSGGCERRERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGESLAQEDTLVDEDLQCRSCVYSRKLRRTLLEHECISEDAK-EEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALQYRG-TEYSSYDAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVKSLKYLTKGVVEGEN------------------NPHFCMPGPPNEIGILLLEMAWAVYAE 416
BLAST of mRNA_L-elsbetiae_contig1213.1779.1 vs. uniprot
Match: A0A6H5LBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA5_9PHAE) HSP 1 Score: 194 bits (493), Expect = 1.280e-54 Identity = 105/233 (45.06%), Postives = 137/233 (58.80%), Query Frame = 3
Query: 591 MCIVSDKVRAKRVYYSEVLNPGVYKVRGDVPCRFSSDKDWATLVHHHCVPEEAAGASGQRCADDHGEFFMTNGAIVHYYFSGGDENKNIGDALGFHNNATWSHYDAVFANSGNRPFMSEESVLISALELHRAGVPFFWLSEYDGQGDINGWEVSSVSRFHESGARYVDIRSMTHGLRSFTKGAMESVGQDHEKKVEDDRFEKYVGGDPHFCLPGPPDEMALLLLKLMWAVHQE 1289
MCI +KV AKRV Y + N + G+ CR + D V + C+ ++ RC DDH E+ NGA+VHYYF+G D K+I DAL H N + SHYDAVFAN GN P M+ + V +A EL VPF WLS YDG G ++ W + +F +SGAR+V++ M GL +FTKGA+E DR DPHFCLPGPPDE+ LLLK++WA++QE
Sbjct: 1 MCIHWNKVVAKRVTYQQPGNGVDRWIHGNAQCRACTGFD-QQQVDYGCLDQDVRD-DACRCDDDHAEYLFQNGAVVHYYFAGTDPKKSIKDALLPHGNVSLSHYDAVFANDGNWPKMAVDDVCEAAFELQALSVPFLWLSTYDGHGSVDLWNDAQKEKFSQSGARFVNVGHMLFGLSNFTKGAVE------------DRV------DPHFCLPGPPDELGFLLLKIIWALYQE 213
BLAST of mRNA_L-elsbetiae_contig1213.1779.1 vs. uniprot
Match: A0A6H5L5J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J2_9PHAE) HSP 1 Score: 193 bits (491), Expect = 2.500e-54 Identity = 103/233 (44.21%), Postives = 137/233 (58.80%), Query Frame = 3
Query: 591 MCIVSDKVRAKRVYYSEVLNPGVYKVRGDVPCRFSSDKDWATLVHHHCVPEEAAGASGQRCADDHGEFFMTNGAIVHYYFSGGDENKNIGDALGFHNNATWSHYDAVFANSGNRPFMSEESVLISALELHRAGVPFFWLSEYDGQGDINGWEVSSVSRFHESGARYVDIRSMTHGLRSFTKGAMESVGQDHEKKVEDDRFEKYVGGDPHFCLPGPPDEMALLLLKLMWAVHQE 1289
MCI +KV AKR Y + N + G+ CR + V++ C+ ++ RC DDH EF NGA+VHYYF+ D NK+I DAL H N + S+YDAV AN+GN P M+ + V +ALEL VPF WLS Y G+G ++ W + +F +SGAR+V++ M GL +FTKGA+E G DPHFCLPGPPDE+ LLLLK++WA+HQE
Sbjct: 1 MCIYWNKVVAKRATYQQPGNGVDRWIHGNAQCRACTGLQ-QQQVNYGCLDQDVRD-DACRCDDDHAEFLFQNGAVVHYYFASTDPNKSIKDALLPHGNVSLSYYDAVVANNGNGPEMAVDVVCEAALELQALSVPFLWLSTYVGRGSVDLWNDAQQEQFTQSGARFVNVGHMMFGLSNFTKGAVEG------------------GNDPHFCLPGPPDELGLLLLKIIWAIHQE 213
BLAST of mRNA_L-elsbetiae_contig1213.1779.1 vs. uniprot
Match: D7G974_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI) HSP 1 Score: 173 bits (438), Expect = 4.640e-47 Identity = 86/175 (49.14%), Postives = 113/175 (64.57%), Query Frame = 3
Query: 768 RCADDHGEFFMTNGAIVHYYFSGGDENKNIGDALGFHNNATWSHYDAVFANSGNRPFMSEESVLISALELHRAGVPFFWLSEYDGQGDINGWEVSS-VSRFHESGARYVDIRSMTHGLRSFTKGAMESVGQDHEKKVEDDRFEKYVGGDPHFCLPGPPDEMALLLLKLMWAVHQE 1289
RC DDHGEFF +NGA+VH+YF+ DE+K I DAL H+ +S+Y AVFAN GN+P + ++VL +A EL AGVPFFWLS Y+G+GD W + F SGA++V + M GL T+ + E+ VED DPHFC+PGPPDE+ +LLLKL+WA+H E
Sbjct: 26 RCDDDHGEFFFSNGAVVHFYFANRDEDKRITDALAPHDKEDFSYYTAVFANPGNKPSVEADAVLDAAFELQAAGVPFFWLSTYEGKGDPQRWNSPQRETDFPGSGAKFVRVVDMVQGLHRLTRKVV-------ERTVED---------DPHFCMPGPPDEVGILLLKLLWALHHE 184
BLAST of mRNA_L-elsbetiae_contig1213.1779.1 vs. uniprot
Match: A0A6V1L833_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1L833_HETAK) HSP 1 Score: 85.1 bits (209), Expect = 4.800e-14 Identity = 85/313 (27.16%), Postives = 133/313 (42.49%), Query Frame = 3
Query: 387 CDCSFYRARYFCRSREAGQGYRQWLPRAVSEGICNSVTRSQLLETPFPPMFKVLIYGNSHLRQVVEALMCIVSDKVRAKRVYYSEVLNPGVYKVRGDVP--------CRFSSDKDWATLVHH--HCVPEEAAGASGQ--RCADDHGEFFMTNGAIVHYYFSGGDENKNIGDALGFHNNATWSHYDAVFANS--GNRPFMSEESVLISALE-LHRAGVPFFW--LSEYDGQGDINGWEVSSVSRFHESGARYVDIRSMTHGLRSFTKGAMESVGQDHEKKVEDDRFEKYVGGDPHFCLPGPPDEMALLLLKLMW 1274
C C + RY C ++ Q Y +LP A+ +G+C T L E P P K L++GNS+LRQ++EA++C+ SD + +K V E G+ + RG P CR W H + P+ + C D+ + NGA +H+ +S I L N+ ++D + N NR +E V++ L FW L+E D + + + S + F ++ RS VG K ++ D GD HFCLPG PD++A+ LL ++
Sbjct: 110 CSCPHAKGRYHCHGKDL-QAY--FLPTAIEKGLCRWHTVEYLKENPLPAGSKTLLFGNSYLRQLMEAVLCMFSDSIASKEVVLQE---EGITRQRGKYPMVEVGQTECRGGP---WEFNAQHFLYDCPDSQKNQTPNVTECYDNLMKVSFKNGAELHFIYSFESTIPYIPKQLPGVNSL--QYFDVIMTNGVYANR-MKAETFVMVKEKNGLDGKSPRLFWAGLNENDYENAKDLFLASKIEVFKA----HIINRSQ----------CSRRVG----KILQQD------AGDRHFCLPGVPDDVAISLLHFIY 386 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1213.1779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1213.1779.1 >prot_L-elsbetiae_contig1213.1779.1 ID=prot_L-elsbetiae_contig1213.1779.1|Name=mRNA_L-elsbetiae_contig1213.1779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=377bp MGGMLLLLLCAAWLALSSGAGVNISFAEEPSVANRSCTKDELLPHSTSSSback to top mRNA from alignment at L-elsbetiae_contig1213:13687..22604+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1213.1779.1 ID=mRNA_L-elsbetiae_contig1213.1779.1|Name=mRNA_L-elsbetiae_contig1213.1779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8918bp|location=Sequence derived from alignment at L-elsbetiae_contig1213:13687..22604+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1213:13687..22604+ >mRNA_L-elsbetiae_contig1213.1779.1 ID=mRNA_L-elsbetiae_contig1213.1779.1|Name=mRNA_L-elsbetiae_contig1213.1779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2262bp|location=Sequence derived from alignment at L-elsbetiae_contig1213:13687..22604+ (Laminarionema elsbetiae ELsaHSoW15)back to top |