mRNA_L-elsbetiae_contig1213.1778.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1213.1778.1
Unique NamemRNA_L-elsbetiae_contig1213.1778.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1213.1778.1 vs. uniprot
Match: D7G974_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.380e-28
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   31 CADDHGEFFMTNGAIVHYYFSSEDTNKNIGDALSFHNNATWSHYDAVFANGGNPPFMSEESVLISALELQRADVPFFWLSEYDGQGD 291
            C DDHGEFF +NGA+VH+YF++ D +K I DAL+ H+   +S+Y AVFAN GN P +  ++VL +A ELQ A VPFFWLS Y+G+GD
Sbjct:   27 CDDDHGEFFFSNGAVVHFYFANRDEDKRITDALAPHDKEDFSYYTAVFANPGNKPSVEADAVLDAAFELQAAGVPFFWLSTYEGKGD 113
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1213.1778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G974_ECTSI2.380e-2857.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1213contigL-elsbetiae_contig1213:10142..10936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815411.9569836-CDS-L-elsbetiae_contig1213:10141..101681622815411.9569836-CDS-L-elsbetiae_contig1213:10141..10168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1213 10142..10168 +
1691682886.2772756-CDS-L-elsbetiae_contig1213:10141..101681691682886.2772756-CDS-L-elsbetiae_contig1213:10141..10168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1213 10142..10168 +
1622815411.9689493-CDS-L-elsbetiae_contig1213:10672..109361622815411.9689493-CDS-L-elsbetiae_contig1213:10672..10936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1213 10673..10936 +
1691682886.2866037-CDS-L-elsbetiae_contig1213:10672..109361691682886.2866037-CDS-L-elsbetiae_contig1213:10672..10936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1213 10673..10936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1213.1778.1prot_L-elsbetiae_contig1213.1778.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1213 10142..10936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1213.1778.1

>prot_L-elsbetiae_contig1213.1778.1 ID=prot_L-elsbetiae_contig1213.1778.1|Name=mRNA_L-elsbetiae_contig1213.1778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
EEAAGASGQHCADDHGEFFMTNGAIVHYYFSSEDTNKNIGDALSFHNNAT
WSHYDAVFANGGNPPFMSEESVLISALELQRADVPFFWLSEYDGQGD
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mRNA from alignment at L-elsbetiae_contig1213:10142..10936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1213.1778.1 ID=mRNA_L-elsbetiae_contig1213.1778.1|Name=mRNA_L-elsbetiae_contig1213.1778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=795bp|location=Sequence derived from alignment at L-elsbetiae_contig1213:10142..10936+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGAAGCTGCTGGCGCGTCAGGACAGGTACGTTCATGTCCCAACTATCA
GTTTAGTGTATGCCATGATTTGACAAAGTACGGGTACATGACAGGTTTCG
AGCGAAAGCAGTATGCACTTACACGCTGCTCTATGACCTTTGGCGTCGAC
GCCTTTATGTATATCTTGAGGGTAGTGGAACCACGGATAGCACGATACGA
TTTCAACTAGACGTATGTGATCATCATCGGCCCCCTTGCTGTGTTCTCCA
GTACAGAGTATAAAGCCCACAAAAAACGACCAGCGAGCTATAACGGAGTG
TGGGTTTTGCGCCTGTTGTAGTCTTGGGCGGTAAGAACGGAGGGTTAGTG
TGTCTTCAACAGCCCTCCTGGCACGGCTTTGTCACAGGCCGGGCGTAGAC
CGCTCACATTTGCACAACATTTATTAGATCAAAGAGGTGGGCGTATGATA
CGTCTCATCTCACGCTCCATCTTGTTTTGGGAGGTCGCACGTGCTAATCA
CTTCATCCGCCTCGGTTGCAAACGTTTCCAGCACTGTGCGGACGACCACG
GGGAGTTCTTCATGACGAACGGTGCGATAGTGCACTACTACTTCTCTAGC
GAAGACACGAATAAGAACATCGGAGACGCTCTTAGTTTCCACAACAACGC
AACCTGGTCTCACTACGATGCCGTCTTCGCCAACGGCGGTAATCCGCCGT
TCATGTCGGAAGAATCGGTTCTGATTTCTGCTTTGGAGCTTCAACGTGCC
GACGTGCCATTCTTTTGGCTCAGCGAGTACGACGGGCAAGGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1213:10142..10936+

>mRNA_L-elsbetiae_contig1213.1778.1 ID=mRNA_L-elsbetiae_contig1213.1778.1|Name=mRNA_L-elsbetiae_contig1213.1778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig1213:10142..10936+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGAAGCTGCTGGCGCGTCAGGACAGGAAGAAGCTGCTGGCGCGTCAGG
ACAGCACTGTGCGGACGACCACGGGGAGTTCTTCATGACGAACGGTGCGA
TAGTGCACTACTACTTCTCTAGCGAAGACACGAATAAGAACATCGGAGAC
GCTCTTAGTTTCCACAACAACGCAACCTGGTCTCACTACGATGCCGTCTT
CGCCAACGGCGGTAATCCGCCGTTCATGTCGGAAGAATCGGTTCTGATTT
CTGCTTTGGAGCTTCAACGTGCCGACGTGCCATTCTTTTGGCTCAGCGAG
TACGACGGGCAAGGGGACCACTGTGCGGACGACCACGGGGAGTTCTTCAT
GACGAACGGTGCGATAGTGCACTACTACTTCTCTAGCGAAGACACGAATA
AGAACATCGGAGACGCTCTTAGTTTCCACAACAACGCAACCTGGTCTCAC
TACGATGCCGTCTTCGCCAACGGCGGTAATCCGCCGTTCATGTCGGAAGA
ATCGGTTCTGATTTCTGCTTTGGAGCTTCAACGTGCCGACGTGCCATTCT
TTTGGCTCAGCGAGTACGACGGGCAAGGGGAC
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