mRNA_L-elsbetiae_contig12123.1776.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12123.1776.1
Unique NamemRNA_L-elsbetiae_contig12123.1776.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: D8LUA8_ECTSI (Iron-sulfur clusters transporter atm1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA8_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 8.710e-107
Identity = 180/242 (74.38%), Postives = 190/242 (78.51%), Query Frame = 1
Query:   22 QVPPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQ----------------------------------------GYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEVCA 627
            +VP GQTVAIVG SGCGKSTI+RLLYRFFDI+SGSIKIAGQDIK VSQ SLRRAVGVVPQDTVLFNDTIGYNIAYGDL A  E+V E ARKAQLD+SIASMPQ                                        GY TVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDT+TETEIMGHLK LGRNRT+IIIAHRLSTVKDADKI+VLDQG+VVEEGNHAE+ A
Sbjct:  463 EVPAGQTVAIVGHSGCGKSTIMRLLYRFFDINSGSIKIAGQDIKEVSQASLRRAVGVVPQDTVLFNDTIGYNIAYGDLCAGTEEVEEAARKAQLDSSIASMPQDGAARYARRQHTRPRYASIPWRHVLDFVSAHVLFLSRPLKGYGTVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTKTETEIMGHLKTLGRNRTSIIIAHRLSTVKDADKIIVLDQGKVVEEGNHAELMA 704          
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: A0A7S1CE28_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CE28_9STRA)

HSP 1 Score: 268 bits (685), Expect = 2.740e-88
Identity = 131/200 (65.50%), Postives = 163/200 (81.50%), Query Frame = 1
Query:   28 PPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEVCA 627
            P G TVA+VG SGCGKST++RLLYRF+D+  GS+KI GQD++ V+  SLRR +GVVPQDTVLF+DTI +NI YGDL A  E+V + AR AQ+  +I  MP GY+T+VGERGL +SGGEKQRVAIARA+LK+APILLCDE TS+LDT TE +IMG L+ L R RTTI+IAHRLSTV+DAD+I+V+  G+VVE G H ++ A
Sbjct:    1 PAGATVAVVGPSGCGKSTLVRLLYRFYDVHGGSVKIDGQDVRDVTMESLRRNIGVVPQDTVLFHDTIMHNIQYGDLDATEEEVYQAARAAQVHDAIMRMPDGYDTIVGERGLKLSGGEKQRVAIARAILKDAPILLCDEATSALDTTTENDIMGSLRQLARGRTTILIAHRLSTVQDADQILVMGDGKVVEAGTHDQLLA 200          
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: W7TLP4_9STRA (Abc transporter b family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLP4_9STRA)

HSP 1 Score: 279 bits (713), Expect = 4.320e-87
Identity = 141/202 (69.80%), Postives = 169/202 (83.66%), Query Frame = 1
Query:   22 QVPPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEVCA 627
            +VP GQTVA+VG SGCGKST++RLLYRF+D+D GSI+I  QDI+ V   SLRRA+GVVPQDT+LFNDTI YNI YG+L A+   V   ARKAQ+  SI  MPQGYET VGERGL +SGGE+QRVAIARA+LK+AP+LLCDE TS+LD  TE EIM H+K LG+ +TT++IAHRLST++DADKIVVLDQGRVVEEG+H E+ A
Sbjct:  408 KVPYGQTVAVVGPSGCGKSTLLRLLYRFYDVDGGSIQINHQDIRDVPLPSLRRALGVVPQDTLLFNDTIYYNIHYGNLLASRAAVETAARKAQIHESILRMPQGYETRVGERGLKLSGGERQRVAIARAILKDAPMLLCDEATSALDAATEGEIMHHVKVLGQGKTTLMIAHRLSTIQDADKIVVLDQGRVVEEGSHQELLA 609          
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: A0A7S3P5P7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5P7_9STRA)

HSP 1 Score: 262 bits (669), Expect = 6.650e-85
Identity = 130/200 (65.00%), Postives = 165/200 (82.50%), Query Frame = 1
Query:   25 VPPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKN-APILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEV 621
            +P G+T+AIVG SG GKSTI+RLLYRF++ D+G I + G+ ++  +Q S++RA+ VVPQDTVLF+D+I YNI YG+L A PE V E A++A++  SI   P GY+TVVGERGL +SGGEKQRVAIARA+LKN APILLCDEPTSSLDT+TET +M +LK +G+ RTTIIIAHRLST++D D+IVV+DQGRVVE G H E+
Sbjct:   71 IPQGKTMAIVGSSGSGKSTILRLLYRFYEADAGEILLGGKPLEAWTQASIQRAMAVVPQDTVLFHDSIFYNIHYGNLKATPEQVYEAAKQAEIHESILRFPDGYDTVVGERGLKLSGGEKQRVAIARAILKNNAPILLCDEPTSSLDTETETALMDNLKRVGQGRTTIIIAHRLSTIQDCDEIVVMDQGRVVERGTHDEL 270          
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: A0A836CGR1_9STRA (Iron-sulfur clusters transporter atm1, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGR1_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.000e-84
Identity = 137/202 (67.82%), Postives = 165/202 (81.68%), Query Frame = 1
Query:   22 QVPPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEVCA 627
            +VP G+TVA+VG SGCGKST+IRLLYR +D  SGS+ I GQD+  V  +SLRR + VVPQDTVLF+DTIGYN+ YG+LT   E V E A +A L  +IA MP+GY+TVVGERGLM+SGGEKQRVAIARAMLKNAP+LLCDEPTS+LD++TE  +M  LK+LG  RTT+IIAHRLSTV+DAD+IVVLD G+VVE G H  + A
Sbjct:  478 EVPAGKTVAVVGHSGCGKSTLIRLLYRLYDASSGSVTIDGQDVTKVQLSSLRRHIAVVPQDTVLFHDTIGYNLHYGNLTQPWEKVVEAAEQASLTDAIARMPRGYDTVVGERGLMLSGGEKQRVAIARAMLKNAPVLLCDEPTSALDSRTEVAVMSKLKSLGSGRTTLIIAHRLSTVQDADEIVVLDNGQVVERGAHFALLA 679          
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: A0A7S2N4Z9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4Z9_9STRA)

HSP 1 Score: 266 bits (679), Expect = 2.280e-83
Identity = 127/201 (63.18%), Postives = 166/201 (82.59%), Query Frame = 1
Query:   25 VPPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEVCA 627
            V  GQTVA+VG SGCGKSTI+R+LYRF++ + G+I + G++I+ ++  S+R+A+ VVPQDTVLFN++IGYNI YGDL+A+ EDV   A+KA +  ++ S P GY+TVVGERGL +SGGEKQRVAIARA+L  APILLCDEPTSSLD+ TE +IM +LK +G+NRTT+IIAHRLST++D D I+VL +G+VVE G HAE+ A
Sbjct:  309 VKEGQTVALVGSSGCGKSTILRMLYRFYEPEKGTITLGGRNIQDMTTQSVRKAIAVVPQDTVLFNESIGYNIHYGDLSASWEDVIHAAKKAHIHDTVMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILNKAPILLCDEPTSSLDSHTEADIMNNLKEIGKNRTTVIIAHRLSTIQDCDDIIVLHEGKVVERGMHAELVA 509          
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: A0A6V2Q6L2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2Q6L2_9STRA)

HSP 1 Score: 270 bits (691), Expect = 3.220e-83
Identity = 129/201 (64.18%), Postives = 166/201 (82.59%), Query Frame = 1
Query:   25 VPPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEVCA 627
            V  GQTVA+VG SGCGKST++R+LYRF++ D GSI + G ++K ++  S+R+A+ VVPQDTVLFN+TIGYNI YGDL+A+ EDV   A+KA +  +I S P GY+T+VGERGL +SGGEKQRVAIARA+LK APILLCDEPTSSLD+ TE +IM +LK +G+N TT+IIAHRLST++D D+I+VL++GRVVE G H E+ A
Sbjct:  506 VKEGQTVALVGSSGCGKSTLLRMLYRFYEPDKGSITLGGHNMKDLTTESVRKAIAVVPQDTVLFNETIGYNINYGDLSASKEDVITAAKKAHIHDTILSFPNGYDTIVGERGLKLSGGEKQRVAIARAILKKAPILLCDEPTSSLDSHTEADIMNNLKEIGKNTTTLIIAHRLSTIQDCDEIIVLNEGRVVERGTHDELVA 706          
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: A0A6T8JV75_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JV75_9STRA)

HSP 1 Score: 258 bits (659), Expect = 6.570e-83
Identity = 127/199 (63.82%), Postives = 158/199 (79.40%), Query Frame = 1
Query:   25 VPPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEV 621
            V  G+TVAIVG SG GKST+IRLLYRF+D + G I I G+    +S  S+R+ + VVPQDTVLFN+TI YNI YG+L  + EDV   A+ A++  +I   P+GY+TVVGERGL +SGGEKQRVAIARA+LKNAPILLCDEPTSSLD++TE +IM +LK +G+N TTIIIAHRLST++D D+IVV D+GRVVE G H E+
Sbjct:   95 VQEGKTVAIVGSSGSGKSTVIRLLYRFYDAEKGDITIGGKSTHDLSDESIRKQIAVVPQDTVLFNETIAYNIQYGNLDLSQEDVVSAAKAAKIHNTIMRFPKGYDTVVGERGLKLSGGEKQRVAIARAILKNAPILLCDEPTSSLDSETEHDIMSNLKEIGKNMTTIIIAHRLSTIQDCDEIVVCDEGRVVERGTHDEL 293          
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: B7G6F6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G6F6_PHATC)

HSP 1 Score: 265 bits (677), Expect = 1.550e-82
Identity = 128/198 (64.65%), Postives = 166/198 (83.84%), Query Frame = 1
Query:   34 GQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEVCA 627
            G+TVA VG SGCGKSTI+RLLYRF+  D G I + G DI+ +++ SL+RA+ VVPQDTVLF+++I YNI YGDL+A+ ++V E A+KA++  +I S P GYETVVGERGL +SGGEKQRVAIARA+LKNAPILLCDEPTSSLD++TET+IM +LK +G+ RTT+IIAHRLST++D D+I+V+++G VVE G H E+ A
Sbjct:  369 GKTVAFVGSSGCGKSTILRLLYRFYHPDQGLISVGGHDIQDMTKYSLQRAIAVVPQDTVLFHESIAYNIQYGDLSASWDEVIEAAKKAKIHDTIMSFPDGYETVVGERGLKLSGGEKQRVAIARAILKNAPILLCDEPTSSLDSETETDIMSNLKDVGKGRTTLIIAHRLSTIQDCDEIIVMNRGMVVERGTHDELIA 566          
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Match: A0A3B9YSH8_9PROT (Metal ABC transporter permease (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9YSH8_9PROT)

HSP 1 Score: 256 bits (655), Expect = 2.650e-82
Identity = 127/201 (63.18%), Postives = 154/201 (76.62%), Query Frame = 1
Query:   25 VPPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDIKGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQLDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPTSSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVEEGNHAEVCA 627
            VP G+TVAIVG SG GKSTI R+LYRF+DI SG + I GQD++ VSQ S+R  +G+VPQDTVLFNDTI YNI YG + A   D+ E AR AQ++  I  +P G+  +VGERGL +SGGEKQRVAIAR +LKN PIL+ DE TS+LDT TE EI   LK + RNRTT++IAHRLSTV DAD+I+VLD GR+VE G H E+ A
Sbjct:   83 VPAGKTVAIVGPSGAGKSTISRILYRFYDIQSGRVTIDGQDLRDVSQASVREVIGIVPQDTVLFNDTIRYNIRYGRIDATDADIEEAARLAQIEPFIKQLPDGFAAMVGERGLKLSGGEKQRVAIARTLLKNPPILILDEATSALDTHTEREIQSALKVVSRNRTTLVIAHRLSTVVDADEILVLDAGRIVERGRHTELLA 283          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12123.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUA8_ECTSI8.710e-10774.38Iron-sulfur clusters transporter atm1, mitochondri... [more]
A0A7S1CE28_9STRA2.740e-8865.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
W7TLP4_9STRA4.320e-8769.80Abc transporter b family protein n=1 Tax=Nannochlo... [more]
A0A7S3P5P7_9STRA6.650e-8565.00Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A836CGR1_9STRA1.000e-8467.82Iron-sulfur clusters transporter atm1, mitochondri... [more]
A0A7S2N4Z9_9STRA2.280e-8363.18Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V2Q6L2_9STRA3.220e-8364.18Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6T8JV75_9STRA6.570e-8363.82Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7G6F6_PHATC1.550e-8264.65Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A3B9YSH8_9PROT2.650e-8263.18Metal ABC transporter permease (Fragment) n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12123contigL-elsbetiae_contig12123:3229..5719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.2
Seed ortholog evalue8.8e-89
Seed eggNOG ortholog2880.D8LUA8
KEGG koko:K05662
KEGG TC3.A.1.210
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0008150,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031154,GO:0031224,GO:0032502,GO:0032991,GO:0042623,GO:0042626,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071944,GO:0090702,GO:0098533,GO:0098796,GO:0098797,GO:0099120,GO:1902494,GO:1902495,GO:1904949,GO:1990351
EggNOG free text desc.ATP-binding cassette subfamily B
EggNOG OGsCOG5265@1,KOG0057@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons4
Model size627
Cds size627
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12123.1776.1prot_L-elsbetiae_contig12123.1776.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12123 3229..5719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815411.8257554-CDS-L-elsbetiae_contig12123:3228..33531622815411.8257554-CDS-L-elsbetiae_contig12123:3228..3353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12123 3229..3353 +
1691682886.220104-CDS-L-elsbetiae_contig12123:3228..33531691682886.220104-CDS-L-elsbetiae_contig12123:3228..3353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12123 3229..3353 +
1622815411.8403497-CDS-L-elsbetiae_contig12123:3963..41681622815411.8403497-CDS-L-elsbetiae_contig12123:3963..4168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12123 3964..4168 +
1691682886.2315576-CDS-L-elsbetiae_contig12123:3963..41681691682886.2315576-CDS-L-elsbetiae_contig12123:3963..4168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12123 3964..4168 +
1622815411.8532877-CDS-L-elsbetiae_contig12123:5012..51501622815411.8532877-CDS-L-elsbetiae_contig12123:5012..5150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12123 5013..5150 +
1691682886.2404468-CDS-L-elsbetiae_contig12123:5012..51501691682886.2404468-CDS-L-elsbetiae_contig12123:5012..5150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12123 5013..5150 +
1622815411.8660402-CDS-L-elsbetiae_contig12123:5560..57191622815411.8660402-CDS-L-elsbetiae_contig12123:5560..5719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12123 5561..5719 +
1691682886.2509391-CDS-L-elsbetiae_contig12123:5560..57191691682886.2509391-CDS-L-elsbetiae_contig12123:5560..5719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12123 5561..5719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12123.1776.1

>prot_L-elsbetiae_contig12123.1776.1 ID=prot_L-elsbetiae_contig12123.1776.1|Name=mRNA_L-elsbetiae_contig12123.1776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
MVFYVVSQVPPGQTVAIVGQSGCGKSTIIRLLYRFFDIDSGSIKIAGQDI
KGVSQTSLRRAVGVVPQDTVLFNDTIGYNIAYGDLTAAPEDVTEVARKAQ
LDASIASMPQGYETVVGERGLMISGGEKQRVAIARAMLKNAPILLCDEPT
SSLDTQTETEIMGHLKALGRNRTTIIIAHRLSTVKDADKIVVLDQGRVVE
EGNHAEVCA
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mRNA from alignment at L-elsbetiae_contig12123:3229..5719+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12123.1776.1 ID=mRNA_L-elsbetiae_contig12123.1776.1|Name=mRNA_L-elsbetiae_contig12123.1776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2491bp|location=Sequence derived from alignment at L-elsbetiae_contig12123:3229..5719+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTTTTACGTTGTTTCACAGGTGCCGCCGGGACAAACGGTCGCGAT CGTGGGACAAAGCGGCTGCGGCAAGTCCACCATCATCCGCCTCCTCTACC GGTTCTTCGACATCGACTCCGGGAGGTGGGGGAAAACACGAGCCTAGATA CGGCGCGGGTGTGGAGATAAAAAAAAAAATCCCGCACCACCTTCATGCCC ACGACGTGCGGCACACGCCAAAGCTGTTTTTTTTTTCTCTTGTCTCTTGG GGGCGTCTTCGCCCTCCTCCCTGTCCGAAAAACCTCCAGCACCTCGTGCA AGTCACCTGGTGCTCGAGGGCACACGCAATGCTCTGAGAGTGGCGTGAAC GACCGACGGCAAGGGTGCATATTGTTTTGGGGTGCTGCGGGTAAAGAGGG CCGGCCGGATATCTGTACGGCGCGTAAAATTTAATTTTGCTCGCCACAGT AGTGGCGGTCGAGTAACAGTTTTCATGCTGGATGTTCGCCAACTATTCAG TTTCCCTCCCTATCGCCACCATCTGCGGTAACCTGCGGCCGGCCGGTTAT GTGAAGCGCCTCTAGGTGCTGCTGCGTACCCTGCCTTTGACAGATGATCT AAGAGAAGCCGGCTTTGCCTTTAAAACCCAAACAGGGGTTTTGGGGCACA CCTTTCCCCCATCACGCCTCCCCCTTTCCGCGACCTGAGACAAAAAAAAA CGAACACCGCGTGCGTCCTGTGTATGTACGCGCAGCATTAAGATCGCCGG CCAAGACATCAAGGGGGTGTCGCAGACGAGCCTCCGTCGAGCGGTGGGGG TGGTTCCGCAGGACACGGTGCTCTTCAACGACACGATCGGCTACAACATC GCGTATGGCGACTTGACCGCCGCGCCCGAGGACGTGACGGAGGTCGCGAG GAAGGCACAGCTGGACGCGTCCATCGCCAGCATGCCGCAGGTCCGGGGGG GGGGGGTCAGCAGATAGGGCAGTAGATGTTGGGTTGCCTGGCATGCGGTA CGGCAGTACATACACACGAAAAGCGTCGTGTGGTGAACGTTGTTGTTTTT TTTCTTTTATTACCGCTCTCTTTTGCTCACTGCCAGCCCAATGCATCATC AAGGTGTCGATGGGCTTGGGACACAACGTGTGGGGTTTTTTGCGTCTGCT GATTGTTTCTTTGGTGCGCGGGTGCGTGTTGCGGCACGACGGCGCGGCCG AAAAGCCAGCAGCATGCGAACCCCGGGTTGCGCAGGTCGCTTTTTATGTA AGGTAGCCAAAACGTGTTGTGGGCTGTGTGCATTGTTGCTGATACTCCCA TCGCTTTTGTTGTTCCAGTTGCTGTTGCGTCTGCTGCGGTTTCGTGAAGT ATTCTGCTTGATTTGTGTTTTTTTTTGTGTGCGAAACATCGTGGATTCCT TCTTCTTGTGTCTTTGATTCACTTGGGACGTCCGTATTTTTCACTTACAT ACATACAACCAAACCAAACGCTGTTTAGGGGATGATAGGTTTTATGCCCC CCTTTTGTAGCTGTAGCAGAAGCGGCTTGCCTTTGGGTGCACAAGCGTCT CATCCTGCAGTACCCAATGGAGCAATCTCGTGTGTGGCACTCCCTAGCCC CGTTTTCACCTCTCATTGCTTGTTTCTAGCCCGTTTTCACCTCTCACTGC TTGTTTCCTCTTCTACATACCGCCGTCGTATCGTGCATTTTCTCGTACTC GCACGCCACTCCCTTGCGCATCCTTTATTTTTCACTTTTTGTTTGTTTTG TGACAAATCTTGTACCTACCGACCGCAAAAAAAGGGCTACGAGACAGTCG TGGGTGAGCGCGGCCTCATGATCTCCGGCGGAGAGAAGCAGCGCGTGGCG ATTGCGCGCGCCATGCTGAAGAACGCCCCGATCCTCCTCTGCGACGAGCC CACCTCATCCCTCGACACCCAGGTGTGGTGCGGTGCGGTGCGGTGCGGTT AGTTTGCAAGCGAACGGCGAGCTATCGGGGGGGGGGGGGGGGGGGGGGGT TAGTAAACATAATAATGGCAGGCGGTAGTTTGGTGGTCGCGGTCTGTATC TGGGTTCTAGTATCTCCTCCCCGCCCCATTCCCCCCCCCCCAAGCTCGGC TTGCTTTGTAGGTATACACCCCGAAAATAGGAGACAGCATCCATGTGGCC TCTTGAGAACGCTCTAGGGTACCGCAACGTATAGCCTCTCTCTCTCCCTC CCTCCCTCTCTCTCTCTCTCTCTCCACCCGCACTCCTTCAATCCTTCAAA TCATCTGCGCACCGTCTGTCCCCCCCGATTGTTGTCGCGTGTTTTTGTTC TTATTGTTTTTATTTCGAAAAAACAAACAAAGACGGAGACAGAAATCATG GGCCACCTCAAGGCCCTCGGCCGCAACCGCACGACCATCATCATCGCGCA CCGGCTGTCGACCGTCAAGGACGCCGATAAGATCGTCGTTCTCGACCAGG GGAGAGTGGTGGAGGAGGGGAACCATGCCGAGGTATGCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12123:3229..5719+

>mRNA_L-elsbetiae_contig12123.1776.1 ID=mRNA_L-elsbetiae_contig12123.1776.1|Name=mRNA_L-elsbetiae_contig12123.1776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig12123:3229..5719+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTTTTACGTTGTTTCACAGGTGCCGCCGGGACAAACGGTCGCGAT
CGTGGGACAAAGCGGCTGCGGCAAGTCCACCATCATCCGCCTCCTCTACC
GGTTCTTCGACATCGACTCCGGGAGATGGTGTTTTACGTTGTTTCACAGG
TGCCGCCGGGACAAACGGTCGCGATCGTGGGACAAAGCGGCTGCGGCAAG
TCCACCATCATCCGCCTCCTCTACCGGTTCTTCGACATCGACTCCGGGAG
CATTAAGATCGCCGGCCAAGACATCAAGGGGGTGTCGCAGACGAGCCTCC
GTCGAGCGGTGGGGGTGGTTCCGCAGGACACGGTGCTCTTCAACGACACG
ATCGGCTACAACATCGCGTATGGCGACTTGACCGCCGCGCCCGAGGACGT
GACGGAGGTCGCGAGGAAGGCACAGCTGGACGCGTCCATCGCCAGCATGC
CGCAGCATTAAGATCGCCGGCCAAGACATCAAGGGGGTGTCGCAGACGAG
CCTCCGTCGAGCGGTGGGGGTGGTTCCGCAGGACACGGTGCTCTTCAACG
ACACGATCGGCTACAACATCGCGTATGGCGACTTGACCGCCGCGCCCGAG
GACGTGACGGAGGTCGCGAGGAAGGCACAGCTGGACGCGTCCATCGCCAG
CATGCCGCAGGGCTACGAGACAGTCGTGGGTGAGCGCGGCCTCATGATCT
CCGGCGGAGAGAAGCAGCGCGTGGCGATTGCGCGCGCCATGCTGAAGAAC
GCCCCGATCCTCCTCTGCGACGAGCCCACCTCATCCCTCGACACCCAGGG
CTACGAGACAGTCGTGGGTGAGCGCGGCCTCATGATCTCCGGCGGAGAGA
AGCAGCGCGTGGCGATTGCGCGCGCCATGCTGAAGAACGCCCCGATCCTC
CTCTGCGACGAGCCCACCTCATCCCTCGACACCCAGACGGAGACAGAAAT
CATGGGCCACCTCAAGGCCCTCGGCCGCAACCGCACGACCATCATCATCG
CGCACCGGCTGTCGACCGTCAAGGACGCCGATAAGATCGTCGTTCTCGAC
CAGGGGAGAGTGGTGGAGGAGGGGAACCATGCCGAGGTATGCGCGACGGA
GACAGAAATCATGGGCCACCTCAAGGCCCTCGGCCGCAACCGCACGACCA
TCATCATCGCGCACCGGCTGTCGACCGTCAAGGACGCCGATAAGATCGTC
GTTCTCGACCAGGGGAGAGTGGTGGAGGAGGGGAACCATGCCGAGGTATG
CGCG
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