mRNA_L-elsbetiae_contig12118.1771.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12118.1771.1
Unique NamemRNA_L-elsbetiae_contig12118.1771.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12118.1771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12118contigL-elsbetiae_contig12118:2901..3341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size296
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12118.1771.1prot_L-elsbetiae_contig12118.1771.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12118 2987..3341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815411.1003494-UTR-L-elsbetiae_contig12118:2900..29861622815411.1003494-UTR-L-elsbetiae_contig12118:2900..2986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12118 2901..2986 +
1691682885.8503487-UTR-L-elsbetiae_contig12118:2900..29861691682885.8503487-UTR-L-elsbetiae_contig12118:2900..2986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12118 2901..2986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815411.118072-CDS-L-elsbetiae_contig12118:2986..30631622815411.118072-CDS-L-elsbetiae_contig12118:2986..3063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12118 2987..3063 +
1691682885.8606057-CDS-L-elsbetiae_contig12118:2986..30631691682885.8606057-CDS-L-elsbetiae_contig12118:2986..3063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12118 2987..3063 +
1622815411.1326358-CDS-L-elsbetiae_contig12118:3208..33411622815411.1326358-CDS-L-elsbetiae_contig12118:3208..3341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12118 3209..3341 +
1691682885.8702593-CDS-L-elsbetiae_contig12118:3208..33411691682885.8702593-CDS-L-elsbetiae_contig12118:3208..3341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12118 3209..3341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12118.1771.1

>prot_L-elsbetiae_contig12118.1771.1 ID=prot_L-elsbetiae_contig12118.1771.1|Name=mRNA_L-elsbetiae_contig12118.1771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MLRAVALLALAVKLVGGHQLCFTNDRPTDTEKTELVFCPNEQFGGDVFLQ
YGSCCTDLEEEVIETKFLET
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mRNA from alignment at L-elsbetiae_contig12118:2901..3341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12118.1771.1 ID=mRNA_L-elsbetiae_contig12118.1771.1|Name=mRNA_L-elsbetiae_contig12118.1771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=441bp|location=Sequence derived from alignment at L-elsbetiae_contig12118:2901..3341+ (Laminarionema elsbetiae ELsaHSoW15)
CGACACCTGGGCCTGACCGCAGTTCACTCCCGCAGTGGTGTTGGCAGAGG
ACGCGGTGATCAGTTGAAAAAACAACGCGCAGGGAGATGCTCCGCGCCGT
CGCGTTGCTCGCCCTAGCGGTGAAGTTGGTGGGAGGACATCAACTCTGCT
TCACCAACGATAGGTGCGTTTCGTGGCGGATGTTTCTGTTATCTCGCACG
TGTAAGAGTCTGTTATCTATGTACGGCGCTGCTTCTTATCCTCCTCGACC
CGCTCGCTCACATTCTGTCTAAATCTCCTCGTTGAATCATTTCTGCTCTA
AATCGAAGGCCGACCGACACAGAAAAGACGGAACTTGTTTTTTGTCCGAA
CGAGCAATTTGGAGGCGACGTCTTCCTGCAGTATGGATCGTGTTGCACTG
ACTTGGAGGAAGAAGTGATCGAAACCAAGTTCTTGGAGACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12118:2901..3341+

>mRNA_L-elsbetiae_contig12118.1771.1 ID=mRNA_L-elsbetiae_contig12118.1771.1|Name=mRNA_L-elsbetiae_contig12118.1771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig12118:2901..3341+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCGCGCCGTCGCGTTGCTCGCCCTAGCGGTGAAGTTGGTGGGAGG
ACATCAACTCTGCTTCACCAACGATAGATGCTCCGCGCCGTCGCGTTGCT
CGCCCTAGCGGTGAAGTTGGTGGGAGGACATCAACTCTGCTTCACCAACG
ATAGGCCGACCGACACAGAAAAGACGGAACTTGTTTTTTGTCCGAACGAG
CAATTTGGAGGCGACGTCTTCCTGCAGTATGGATCGTGTTGCACTGACTT
GGAGGAAGAAGTGATCGAAACCAAGTTCTTGGAGACCGCCGACCGACACA
GAAAAGACGGAACTTGTTTTTTGTCCGAACGAGCAATTTGGAGGCGACGT
CTTCCTGCAGTATGGATCGTGTTGCACTGACTTGGAGGAAGAAGTGATCG
AAACCAAGTTCTTGGAGACC
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