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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-07_005780.1 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-02_004070.2 |
| Exons | 1 |
| Model size | 1310 |
| Cds size | 513 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815411.0308428-UTR-L-elsbetiae_contig12112:1392..1458 | 1622815411.0308428-UTR-L-elsbetiae_contig12112:1392..1458 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12112 1393..1458 + |
| 1691682885.8182642-UTR-L-elsbetiae_contig12112:1392..1458 | 1691682885.8182642-UTR-L-elsbetiae_contig12112:1392..1458 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12112 1393..1458 + |
| 1622815411.0573943-UTR-L-elsbetiae_contig12112:1971..2702 | 1622815411.0573943-UTR-L-elsbetiae_contig12112:1971..2702 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12112 1972..2702 + |
| 1691682885.8400383-UTR-L-elsbetiae_contig12112:1971..2702 | 1691682885.8400383-UTR-L-elsbetiae_contig12112:1971..2702 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12112 1972..2702 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815411.0444624-CDS-L-elsbetiae_contig12112:1458..1971 | 1622815411.0444624-CDS-L-elsbetiae_contig12112:1458..1971 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12112 1459..1971 + |
| 1691682885.8299496-CDS-L-elsbetiae_contig12112:1458..1971 | 1691682885.8299496-CDS-L-elsbetiae_contig12112:1458..1971 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12112 1459..1971 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12112.1770.1 >prot_L-elsbetiae_contig12112.1770.1 ID=prot_L-elsbetiae_contig12112.1770.1|Name=mRNA_L-elsbetiae_contig12112.1770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
MYDQFDRLDPWVLAISQWWLINQGLMIPHHSWVTSASAFGIDSEKGQAIW
TSIVKPKSFTRDHAYNLFWSGKQNDSIMRASWDAQDAELLDLTYEQALEV
NKRCKLLDVAGEIAAPSRVDLVSSLNLPSVARRHPEAQLAEDSSDDDDAS
PNETNGKGCGARGHGAVGSV* back to topmRNA from alignment at L-elsbetiae_contig12112:1393..2702+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12112.1770.1 ID=mRNA_L-elsbetiae_contig12112.1770.1|Name=mRNA_L-elsbetiae_contig12112.1770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1310bp|location=Sequence derived from alignment at L-elsbetiae_contig12112:1393..2702+ (Laminarionema elsbetiae ELsaHSoW15)
AGATCCAAAGTCGTCGACGTCATAATAGAGATCACCAAGAAGACCTTCTT
CATCTTCCTGAAAGACATGTACGATCAGTTCGACCGCCTGGATCCTTGGG
TTCTGGCCATTTCACAGTGGTGGTTGATCAACCAGGGGTTGATGATTCCC
CACCATTCCTGGGTTACTTCTGCGTCGGCCTTCGGCATCGACTCCGAGAA
AGGACAGGCAATATGGACTTCCATCGTCAAGCCTAAAAGCTTCACCAGAG
ACCACGCCTACAACCTGTTCTGGTCCGGAAAGCAGAACGACTCCATCATG
CGCGCCAGTTGGGATGCCCAGGACGCGGAGCTCCTCGATCTCACGTACGA
GCAGGCCCTTGAGGTCAACAAACGCTGCAAGCTCCTCGACGTTGCTGGCG
AGATCGCCGCCCCATCCCGAGTCGATCTCGTCAGCAGCCTCAACCTGCCG
TCGGTAGCACGCCGTCACCCTGAAGCTCAACTCGCCGAAGACAGCAGCGA
TGATGACGACGCATCTCCGAACGAAACCAACGGTAAAGGGTGCGGAGCTC
GTGGTCACGGCGCCGTCGGCAGCGTGTAACCTGACGGGAGCTACACTGCA
TCTGACGAGCTTCCGTCCATCACCTACCCTTCCTGTCGCGAATCAAGCTG
CAAACGATCGAGTCCTGCCCTCGACCCTTGTGCCGGTCCTTGCAAAGGGT
TTCTGCACTACACCTGCGGTCACAGAGGACTGAACGCCAAAATGTGCACT
TCGTGCTACACTCCGTGGACATCCAATCGGACATCGATTAATGCAAAACT
AATTTGTTTTATTAGAACATCAATCTGTATTGCTATTATCAACCTTTAGC
AATCGTAATTATCGATTTTGGCAGGAACTTGCGGGATTCGGCTTTTTTTA
ACTATTATGTACATTTTCGATTAGTATTTCTTCTATATTATTTTGTAGAC
GTAAACTTTGTCGCTTGCTTGTGCTATTATAAATGTGCGTTTTTTGGAGG
CACTGTGCACGTGTCGACGCTTTTGTCCCCACCTTTTCTTTTTGTAGTTG
TTTCCGAAGAATTGGGCGTTTTGTTCTTTACAAAAAAGTACGTATTTTGG
ACTCGTGCTACTTAATATAACATGCTGCATGCTTGAGACTTCTTAGTCCC
TATATTTTTTGTTTTCTGTTGCCTCAGAAAAAAAAGGGACTTCTTTGTCC
CTTCAATATTTGGACGTTCTCGTCGGCACAAAAATTACATTGCTCTGAGT
ACATATGTATATTGGACGCGTTTTACTGTATATTATATGCGGACGATTTC
GTCCCTCTAA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12112:1393..2702+ >mRNA_L-elsbetiae_contig12112.1770.1 ID=mRNA_L-elsbetiae_contig12112.1770.1|Name=mRNA_L-elsbetiae_contig12112.1770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig12112:1393..2702+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGATCAGTTCGACCGCCTGGATCCTTGGGTTCTGGCCATTTCACA
GTGGTGGTTGATCAACCAGGGGTTGATGATTCCCCACCATTCCTGGGTTA
CTTCTGCGTCGGCCTTCGGCATCGACTCCGAGAAAGGACAGGCAATATGG
ACTTCCATCGTCAAGCCTAAAAGCTTCACCAGAGACCACGCCTACAACCT
GTTCTGGTCCGGAAAGCAGAACGACTCCATCATGCGCGCCAGTTGGGATG
CCCAGGACGCGGAGCTCCTCGATCTCACGTACGAGCAGGCCCTTGAGGTC
AACAAACGCTGCAAGCTCCTCGACGTTGCTGGCGAGATCGCCGCCCCATC
CCGAGTCGATCTCGTCAGCAGCCTCAACCTGCCGTCGGTAGCACGCCGTC
ACCCTGAAGCTCAACTCGCCGAAGACAGCAGCGATGATGACGACGCATCT
CCGAACGAAACCAACGGTAAAGGGTGCGGAGCTCGTGGTCACGGCGCCGT
CGGCAGCGTGTAAATGTACGATCAGTTCGACCGCCTGGATCCTTGGGTTC
TGGCCATTTCACAGTGGTGGTTGATCAACCAGGGGTTGATGATTCCCCAC
CATTCCTGGGTTACTTCTGCGTCGGCCTTCGGCATCGACTCCGAGAAAGG
ACAGGCAATATGGACTTCCATCGTCAAGCCTAAAAGCTTCACCAGAGACC
ACGCCTACAACCTGTTCTGGTCCGGAAAGCAGAACGACTCCATCATGCGC
GCCAGTTGGGATGCCCAGGACGCGGAGCTCCTCGATCTCACGTACGAGCA
GGCCCTTGAGGTCAACAAACGCTGCAAGCTCCTCGACGTTGCTGGCGAGA
TCGCCGCCCCATCCCGAGTCGATCTCGTCAGCAGCCTCAACCTGCCGTCG
GTAGCACGCCGTCACCCTGAAGCTCAACTCGCCGAAGACAGCAGCGATGA
TGACGACGCATCTCCGAACGAAACCAACGGTAAAGGGTGCGGAGCTCGTG
GTCACGGCGCCGTCGGCAGCGTGTAA back to top
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