mRNA_L-elsbetiae_contig12110.1769.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12110.1769.1
Unique NamemRNA_L-elsbetiae_contig12110.1769.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: D8LDG7_ECTSI (Putative ATP-dependent helicase YFR038W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG7_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.350e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   16 QISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            QISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR
Sbjct:  716 QISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 762
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: A0A6H5KPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.980e-22
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   16 QISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            QISKKKLERVAVQGGDFGKAG+RTYGEMTVPHLRKLLEDDVEDLAKR
Sbjct:  768 QISKKKLERVAVQGGDFGKAGKRTYGEMTVPHLRKLLEDDVEDLAKR 814
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: I2CQK3_NANGC (Helicase-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQK3_NANGC)

HSP 1 Score: 64.7 bits (156), Expect = 1.750e-12
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 LSHAQISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            +  AQISKKKLER+++ GGDF +AGRR+ G++T   LR+LL DDV+D+ +R
Sbjct:   26 MMEAQISKKKLERLSITGGDFRQAGRRSRGDITTEGLRRLLADDVKDIQRR 76
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: W7TYC6_9STRA (Snf2 domanin containing helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYC6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.650e-11
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 LSHAQISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            +  AQISKKKLER+++ GGDF +AGRR+ G++T   LR+LL DDV+D+ +R
Sbjct:  766 MMEAQISKKKLERLSITGGDFRQAGRRSRGDITTEGLRRLLADDVKDIQRR 816
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: F0Y786_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y786_AURAN)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   16 QISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            QISKKKLER+AVQGGD+ KAGRR+ GE+T   LR LL DDV ++A+R
Sbjct:  636 QISKKKLERMAVQGGDYNKAGRRSRGELTTDGLRSLLNDDV-NIAQR 681
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: A0A7S2NXS4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXS4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.760e-10
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   16 QISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            QISKKKLER+A+ GGDF KAGRR+ GE +   L  LL+DD++DL  R
Sbjct:  115 QISKKKLERMAITGGDFRKAGRRSKGEFSAKDLSTLLQDDIKDLQAR 161
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: A0A448ZNT5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.990e-10
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   16 QISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            Q+SKKKLER+ + GGDF KAGRR+ GEMT   L+ LL+ D++DL  R
Sbjct:  713 QVSKKKLERMTIAGGDFRKAGRRSQGEMTFDKLQNLLQSDIQDLQGR 759
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: A0A7R9U2J9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2J9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.820e-10
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   19 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            +SKKKLER+A+ GGD+ +AGRR+ G++T+  L+KLLEDDV  L KR
Sbjct:  691 VSKKKLERMAIGGGDYRRAGRRSRGQLTLEALKKLLEDDVASLDKR 736
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: A0A7S1UBE1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBE1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.880e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            +SKKKLER+A+ GGD+  AGRR+ GE+T+  L+ LLEDDV  L  R
Sbjct:   55 VSKKKLERMAIGGGDYRSAGRRSRGELTLDALKALLEDDVASLGNR 100
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BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Match: A0A7S0BX46_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX46_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.130e-8
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   16 QISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 156
            QISKKKLER+A+ GGDF KAG R+ G  +   L  LLEDD+EDL  +
Sbjct:  360 QISKKKLERMAIVGGDFRKAGARSKGAFSAKALSSLLEDDIEDLQAK 406
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12110.1769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LDG7_ECTSI2.350e-22100.00Putative ATP-dependent helicase YFR038W n=1 Tax=Ec... [more]
A0A6H5KPB1_9PHAE5.980e-2297.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I2CQK3_NANGC1.750e-1256.86Helicase-like protein (Fragment) n=1 Tax=Nannochlo... [more]
W7TYC6_9STRA7.650e-1156.86Snf2 domanin containing helicase n=3 Tax=Monodopsi... [more]
F0Y786_AURAN1.430e-1068.09Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2NXS4_9STRA2.760e-1061.70Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448ZNT5_9STRA4.990e-1059.57Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7R9U2J9_9STRA6.820e-1060.87Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UBE1_9STRA1.880e-958.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0BX46_9STRA1.130e-859.57Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12110contigL-elsbetiae_contig12110:1181..1336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D8LDG7
KEGG koko:K19001
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815410.9825828-CDS-L-elsbetiae_contig12110:1180..13361622815410.9825828-CDS-L-elsbetiae_contig12110:1180..1336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12110 1181..1336 +
1691682885.8069901-CDS-L-elsbetiae_contig12110:1180..13361691682885.8069901-CDS-L-elsbetiae_contig12110:1180..1336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12110 1181..1336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12110.1769.1prot_L-elsbetiae_contig12110.1769.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12110 1181..1336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12110.1769.1

>prot_L-elsbetiae_contig12110.1769.1 ID=prot_L-elsbetiae_contig12110.1769.1|Name=mRNA_L-elsbetiae_contig12110.1769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
MLSHAQISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLA
KR
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mRNA from alignment at L-elsbetiae_contig12110:1181..1336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12110.1769.1 ID=mRNA_L-elsbetiae_contig12110.1769.1|Name=mRNA_L-elsbetiae_contig12110.1769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig12110:1181..1336+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTCGCACGCTCAGATCTCGAAGAAGAAGCTCGAGAGGGTCGCCGT
CCAGGGGGGCGACTTCGGCAAGGCGGGAAGGCGTACCTACGGCGAAATGA
CGGTACCCCACCTACGGAAGCTGCTGGAGGACGACGTCGAGGACCTCGCC
AAGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12110:1181..1336+

>mRNA_L-elsbetiae_contig12110.1769.1 ID=mRNA_L-elsbetiae_contig12110.1769.1|Name=mRNA_L-elsbetiae_contig12110.1769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig12110:1181..1336+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTCGCACGCTCAGATCTCGAAGAAGAAGCTCGAGAGGGTCGCCGT
CCAGGGGGGCGACTTCGGCAAGGCGGGAAGGCGTACCTACGGCGAAATGA
CGGTACCCCACCTACGGAAGCTGCTGGAGGACGACGTCGAGGACCTCGCC
AAGCGCATGCTTTCGCACGCTCAGATCTCGAAGAAGAAGCTCGAGAGGGT
CGCCGTCCAGGGGGGCGACTTCGGCAAGGCGGGAAGGCGTACCTACGGCG
AAATGACGGTACCCCACCTACGGAAGCTGCTGGAGGACGACGTCGAGGAC
CTCGCCAAGCGC
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