mRNA_L-elsbetiae_contig12101.1765.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12101.1765.1
Unique NamemRNA_L-elsbetiae_contig12101.1765.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12101.1765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12101contigL-elsbetiae_contig12101:2115..2726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size295
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815410.5278065-CDS-L-elsbetiae_contig12101:2115..21931622815410.5278065-CDS-L-elsbetiae_contig12101:2115..2193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12101 2116..2193 -
1691682885.5295599-CDS-L-elsbetiae_contig12101:2115..21931691682885.5295599-CDS-L-elsbetiae_contig12101:2115..2193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12101 2116..2193 -
1622815410.541355-CDS-L-elsbetiae_contig12101:2510..27261622815410.541355-CDS-L-elsbetiae_contig12101:2510..2726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12101 2511..2726 -
1691682885.5399253-CDS-L-elsbetiae_contig12101:2510..27261691682885.5399253-CDS-L-elsbetiae_contig12101:2510..2726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12101 2511..2726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12101.1765.1prot_L-elsbetiae_contig12101.1765.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12101 2116..2726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12101.1765.1

>prot_L-elsbetiae_contig12101.1765.1 ID=prot_L-elsbetiae_contig12101.1765.1|Name=mRNA_L-elsbetiae_contig12101.1765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
AAAAGGVPNTLMQNFEASTAANRATAAAAAAAGVSGASGGGMDRVGAASS
ANSVVDDGGGGGSGVRGGAMMAMPTRQQMLLQQQQQQQQLMMMNIPGG
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mRNA from alignment at L-elsbetiae_contig12101:2115..2726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12101.1765.1 ID=mRNA_L-elsbetiae_contig12101.1765.1|Name=mRNA_L-elsbetiae_contig12101.1765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig12101:2115..2726- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCGGCAGCCGGCGGGGTCCCCAACACCCTGATGCAAAATTTTGAGGC
GTCCACGGCCGCAAATCGAGCCACCGCCGCCGCTGCGGCCGCGGCGGGCG
TATCTGGCGCATCTGGTGGCGGGATGGACCGGGTTGGAGCGGCCAGTAGC
GCTAACAGTGTGGTCGACGATGGTGGCGGGGGTGGCTCTGGTGTTCGCGG
CGGGGCCATGATGGCGGTGAGTAGAGTGAGACCGCGTGGGGTGTGTGTCC
TTGGTGTTCTGTGTCCGGGAAGCAAAAGTGCGTCGAAGTAGAAGTGTATT
GCAGCAGTGTAGATGTCTTTACTAAGAGACGTTTCGCAAAACTTCTTTGG
CATGGATGGCATCTGTTCAGCTTTTCTTTCGCCAAACAAACGTTCGGTTC
TCGGCTGGTCCACCCGCAGACGCGGCACGTGCATCACGAGCACAAGGTTT
TTTGGGCATTGATAACCTACTCACGCTGTTGTTTCTCGCCGTGCACCACA
CCCCGTCCCTTTTCCGAACGGCCGACCCCCCAGATGCCAACGCGGCAGCA
GATGCTTTTGCAGCAGCAGCAGCAGCAGCAGCAGCTGATGATGATGAACA
TTCCCGGCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12101:2115..2726-

>mRNA_L-elsbetiae_contig12101.1765.1 ID=mRNA_L-elsbetiae_contig12101.1765.1|Name=mRNA_L-elsbetiae_contig12101.1765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig12101:2115..2726- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCGGCAGCCGGCGGGGTCCCCAACACCCTGATGCAAAATTTTGAGGC
GTCCACGGCCGCAAATCGAGCCACCGCCGCCGCTGCGGCCGCGGCGGGCG
TATCTGGCGCATCTGGTGGCGGGATGGACCGGGTTGGAGCGGCCAGTAGC
GCTAACAGTGTGGTCGACGATGGTGGCGGGGGTGGCTCTGGTGTTCGCGG
CGGGGCCATGATGGCGGCCGCGGCAGCCGGCGGGGTCCCCAACACCCTGA
TGCAAAATTTTGAGGCGTCCACGGCCGCAAATCGAGCCACCGCCGCCGCT
GCGGCCGCGGCGGGCGTATCTGGCGCATCTGGTGGCGGGATGGACCGGGT
TGGAGCGGCCAGTAGCGCTAACAGTGTGGTCGACGATGGTGGCGGGGGTG
GCTCTGGTGTTCGCGGCGGGGCCATGATGGCGATGCCAACGCGGCAGCAG
ATGCTTTTGCAGCAGCAGCAGCAGCAGCAGCAGCTGATGATGATGAACAT
TCCCGGCGGAATGCCAACGCGGCAGCAGATGCTTTTGCAGCAGCAGCAGC
AGCAGCAGCAGCTGATGATGATGAACATTCCCGGCGGA
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