mRNA_L-elsbetiae_contig12098.1758.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12098.1758.1
Unique NamemRNA_L-elsbetiae_contig12098.1758.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12098.1758.1 vs. uniprot
Match: A0A6H5KA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA62_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.230e-20
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:  244 FNIRRKALRIGRQLEGIKD-MMFIGENDISGVRRVLGQALKDGTSPFAILGTLQAAFKGRYNAXXXXXXARGHTEHDFDLAILVMRIG 504
             N++R+A RIGR+L+  K  MMF G+ DI GVRRVL QALKDG SP A+LGTL+AAF+GRY A       R HT+ D DLA+LV+R+G
Sbjct:    2 LNLKRQASRIGRKLQEYKKVMMFHGDIDIPGVRRVLAQALKDGKSPIAMLGTLEAAFQGRYRA-------RAHTQDDLDLAMLVLRVG 82
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12098.1758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA62_9PHAE5.230e-2059.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12098contigL-elsbetiae_contig12098:1884..2718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size506
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12098.1758.1prot_L-elsbetiae_contig12098.1758.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12098 1884..2219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.5730824-CDS-L-elsbetiae_contig12098:1883..22191622815408.5730824-CDS-L-elsbetiae_contig12098:1883..2219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12098 1884..2219 -
1691682884.664746-CDS-L-elsbetiae_contig12098:1883..22191691682884.664746-CDS-L-elsbetiae_contig12098:1883..2219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12098 1884..2219 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.583135-UTR-L-elsbetiae_contig12098:2219..22851622815408.583135-UTR-L-elsbetiae_contig12098:2219..2285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12098 2220..2285 -
1691682884.6750977-UTR-L-elsbetiae_contig12098:2219..22851691682884.6750977-UTR-L-elsbetiae_contig12098:2219..2285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12098 2220..2285 -
1622815408.5932112-UTR-L-elsbetiae_contig12098:2614..27181622815408.5932112-UTR-L-elsbetiae_contig12098:2614..2718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12098 2615..2718 -
1691682884.6841764-UTR-L-elsbetiae_contig12098:2614..27181691682884.6841764-UTR-L-elsbetiae_contig12098:2614..2718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12098 2615..2718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12098.1758.1

>prot_L-elsbetiae_contig12098.1758.1 ID=prot_L-elsbetiae_contig12098.1758.1|Name=mRNA_L-elsbetiae_contig12098.1758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MTIEPNGGASAGCLCRSPRHPSGHVQHPEEGVADRQATRGDQGHDVHRRE
RHIWCAAGLGTGVEGRHVAIRDLGYAAGRLQRQVQRLQRQVQRTRTHRTR
LRSGHPGDAHWG
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mRNA from alignment at L-elsbetiae_contig12098:1884..2718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12098.1758.1 ID=mRNA_L-elsbetiae_contig12098.1758.1|Name=mRNA_L-elsbetiae_contig12098.1758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=835bp|location=Sequence derived from alignment at L-elsbetiae_contig12098:1884..2718- (Laminarionema elsbetiae ELsaHSoW15)
GAGCGTTGTAGGAGAACTGACGATGGGGTGCATGGAGACTGTTGCGCGCG
ACGGAGAGACCTGCATCCCATGCCAAGCGCTCAAGGACAACAAGGTTCTC
AAAGGTGAACGACTTCATGATCTTCGTGCGTGTGTGCGTGTGTGCGTGTG
TGTTGGTTAACATCTACGCGGTCGACCGTCGTACGATGTTGTTCCACGCG
TGATTGCGAATGGAACTTGATGGAACCTCTGTTTTGTTGCATCGTCAAGA
ATCCCCTTCGCTTGTTTCACTTTTTATTTTCACCTCGATCAAGTTGATCA
AGGCACAAACGCTTGCTGTCTGCTCCTTCACACGCCTGTTGTGGTATGCA
CAGCATCGGGTTCAGCGTCTACCTGTCCATAAATTGTAACTCACACCGTC
TTGGCTTTGCTCAAAACACTTTGCGTCTTGCAGACATCGTCGACAGAGCT
GGCCGCTCGATGTCGAGTGCGATAGGGCGCAGCCTGAACTTTTGAGTACA
TGACAATTGAGCCAAATGGAGGAGCGAGCGCGGGCTGCCTCTGCCGCAGT
CCACGCCACCCGTCTGGACACGTTCAACATCCGGAGGAAGGCGTTGCGGA
TCGGCAGGCAACTCGAGGGGATCAAGGACATGATGTTCATCGGCGAGAAC
GACATATCTGGTGTGCGGCGGGTCTTGGGACAGGCGTTGAAGGACGGCAC
GTCGCCATTCGCGATCTTGGGTACGCTGCAGGCCGCCTTCAAAGGCAGGT
ACAACGCCTTCAAAGGCAGGTACAACGCACGCGGACACACCGAACACGAC
TTCGATCTGGCCATCCTGGTGATGCGCATTGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12098:1884..2718-

>mRNA_L-elsbetiae_contig12098.1758.1 ID=mRNA_L-elsbetiae_contig12098.1758.1|Name=mRNA_L-elsbetiae_contig12098.1758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig12098:1884..2718- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAATTGAGCCAAATGGAGGAGCGAGCGCGGGCTGCCTCTGCCGCAG
TCCACGCCACCCGTCTGGACACGTTCAACATCCGGAGGAAGGCGTTGCGG
ATCGGCAGGCAACTCGAGGGGATCAAGGACATGATGTTCATCGGCGAGAA
CGACATATCTGGTGTGCGGCGGGTCTTGGGACAGGCGTTGAAGGACGGCA
CGTCGCCATTCGCGATCTTGGGTACGCTGCAGGCCGCCTTCAAAGGCAGG
TACAACGCCTTCAAAGGCAGGTACAACGCACGCGGACACACCGAACACGA
CTTCGATCTGGCCATCCTGGTGATGCGCATTGGGGGATGACAATTGAGCC
AAATGGAGGAGCGAGCGCGGGCTGCCTCTGCCGCAGTCCACGCCACCCGT
CTGGACACGTTCAACATCCGGAGGAAGGCGTTGCGGATCGGCAGGCAACT
CGAGGGGATCAAGGACATGATGTTCATCGGCGAGAACGACATATCTGGTG
TGCGGCGGGTCTTGGGACAGGCGTTGAAGGACGGCACGTCGCCATTCGCG
ATCTTGGGTACGCTGCAGGCCGCCTTCAAAGGCAGGTACAACGCCTTCAA
AGGCAGGTACAACGCACGCGGACACACCGAACACGACTTCGATCTGGCCA
TCCTGGTGATGCGCATTGGGGG
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