mRNA_L-elsbetiae_contig12095.1756.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12095.1756.1
Unique NamemRNA_L-elsbetiae_contig12095.1756.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12095.1756.1 vs. uniprot
Match: A0A6H5LE14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE14_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.160e-31
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:  337 ETRRNRHQSVLFLGMTRVAEYDVKGGLAKGMTRFGLVEGMVREDVNESNMNPLRYTARVLAMEALGHDVRCVSKVTTPGEPD 582
            E RR R  +VLFLGMTRVAEYD +GGL KGM RF LVE MVR+DVNE+NMNPLR TARVLAMEALGH+VRC+SKV+TPGE D
Sbjct: 1088 EARRKRRLNVLFLGMTRVAEYDSRGGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVSTPGESD 1169
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BLAST of mRNA_L-elsbetiae_contig12095.1756.1 vs. uniprot
Match: D7G392_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G392_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.170e-31
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:  337 ETRRNRHQSVLFLGMTRVAEYDVKGGLAKGMTRFGLVEGMVREDVNESNMNPLRYTARVLAMEALGHDVRCVSKVTTPGEPD 582
            E RR R  +VLFLGMTRVAEYD +GGL KGM RF LVE MVR+DVNE+NMNPLR TARVLAMEALGH+VRC+SKV+TPGE D
Sbjct: 1089 EARRKRRLNVLFLGMTRVAEYDSRGGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVSTPGESD 1170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12095.1756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LE14_9PHAE1.160e-3178.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G392_ECTSI1.170e-3178.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12095contigL-elsbetiae_contig12095:1287..3076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size588
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12095.1756.1prot_L-elsbetiae_contig12095.1756.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12095 1287..3049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.3936825-CDS-L-elsbetiae_contig12095:1286..13771622815408.3936825-CDS-L-elsbetiae_contig12095:1286..1377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12095 1287..1377 -
1691682884.5852127-CDS-L-elsbetiae_contig12095:1286..13771691682884.5852127-CDS-L-elsbetiae_contig12095:1286..1377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12095 1287..1377 -
1622815408.4136102-CDS-L-elsbetiae_contig12095:1871..20441622815408.4136102-CDS-L-elsbetiae_contig12095:1871..2044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12095 1872..2044 -
1691682884.601555-CDS-L-elsbetiae_contig12095:1871..20441691682884.601555-CDS-L-elsbetiae_contig12095:1871..2044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12095 1872..2044 -
1622815408.4268806-CDS-L-elsbetiae_contig12095:2752..30491622815408.4268806-CDS-L-elsbetiae_contig12095:2752..3049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12095 2753..3049 -
1691682884.6109068-CDS-L-elsbetiae_contig12095:2752..30491691682884.6109068-CDS-L-elsbetiae_contig12095:2752..3049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12095 2753..3049 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.438459-UTR-L-elsbetiae_contig12095:3049..30761622815408.438459-UTR-L-elsbetiae_contig12095:3049..3076Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12095 3050..3076 -
1691682884.618573-UTR-L-elsbetiae_contig12095:3049..30761691682884.618573-UTR-L-elsbetiae_contig12095:3049..3076Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12095 3050..3076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12095.1756.1

>prot_L-elsbetiae_contig12095.1756.1 ID=prot_L-elsbetiae_contig12095.1756.1|Name=mRNA_L-elsbetiae_contig12095.1756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MMKRREKRAADRGHGRSLRCTEDNGPDGPSPNGFGRLRPDLTNTPAGTAT
NMQQATEKKRKRAFEKVHHKRDKLELGSAELERIAIQKRQEILSLLSIKE
EIVETRRNRHQSVLFLGMTRVAEYDVKGGLAKGMTRFGLVEGMVREDVNE
SNMNPLRYTARVLAMEALGHDVRCVSKVTTPGEPDSD
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mRNA from alignment at L-elsbetiae_contig12095:1287..3076-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12095.1756.1 ID=mRNA_L-elsbetiae_contig12095.1756.1|Name=mRNA_L-elsbetiae_contig12095.1756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1790bp|location=Sequence derived from alignment at L-elsbetiae_contig12095:1287..3076- (Laminarionema elsbetiae ELsaHSoW15)
GAGAGCAGAGATGGCACGACCGTGACAATGATGAAAAGGAGGGAGAAGAG
GGCCGCGGATCGGGGGCACGGCCGGTCCTTGCGGTGCACGGAGGACAACG
GCCCTGACGGTCCGTCGCCGAACGGGTTTGGGCGGCTCCGGCCCGACCTG
ACGAACACCCCGGCGGGAACGGCCACCAACATGCAGCAGGCTACGGAGAA
GAAGCGGAAGAGGGCCTTCGAGAAGGTGCATCATAAGCGCGATAAGCTGG
AGCTGGGGAGCGCTGAGCTGGAGAGAATCGCGATCCAGAAGCGACAGGAA
ATTCTGAGCCTTCTCTCCATCAAGGTGTTTACGAAGTACCTTTTTAATTT
CGAGTAAATTGTCGTCTTTCGTAGGTAGTGTTTACTGCATACTATGGCCT
TGTGCGCCTAAGATTGTAGGCTACAGAGAGCAGAGCTATTTGCCGTTTTC
TTTTTTTCTTTTTCACCATACATACGTTGGCTGTAGCCGACAACCGTACA
TTGGTTAATAGTGAACGGGGGGGAAACGTAGTTCTGTAGTCGAATGGAGA
TTCGTGGCTGCATGGTTCAGTAGGATACATGTTCTTTTACCGGAATATTA
CCTCTTCGGCCTTGTGTATCCTTGCCCGGTGGATCTGCGTATGTATGTCC
TTTTCGGATCTTCTGGTGGCTCTAGCACTTCTGTGACCACGGGCCATGAG
TTGCTAGATTTTTTGGAATTAGCAACCTCGATCATACGAGCTAATGTGAA
GAAACAACAACAACAACAACATCGTGTTATTTTGTGAGCGCTGCCGTGAC
TTTGGAAAGCTGTGACGGTGGCACTTCCTTCAAACGAAAGAAGCAGAGCA
ACCAACACCAAGAAGCCTATCCACGTACACGATCCCCATCGCGACGAACC
TCTTGAAAGCAATGCAAGCAAGCATCCATCCAATCGTGCAGATCCCGAAA
AATATGCCAACAAGACAACAGCGACAACGGAACAAACACTCTACCACACC
CCTTTTCGCTGAACGCGCCGCCGGCGGAGCAGGAAGAGATCGTCGAGACG
AGGCGGAATCGCCACCAGAGCGTGCTCTTTCTAGGCATGACGAGAGTGGC
CGAGTACGACGTCAAGGGCGGTTTAGCTAAGGGCATGACACGCTTCGGCC
TCGTGGAGGGGATGGTGCGCGAAGATGTGAACGAGTCCAACATGAACCCC
TTGAGGTGGGTGGGGTTGTCGTGTGGTAGGATTGGCGTCCGAGTGCGGCA
GAAGGTAGCTTCTTGAAGAATTGCCCCGCCAAAAGACCCCTTTTGTGTGT
CCCACCAATGCAGAGGGAGCCAAAAACGCAGAAGCAAAACACGAGAGTAC
AAATTATTGTAGCATAATATCACTGATGTGTTCTTTGGAGACTGAATACA
TACATATGCCCCCTGCTTGTATTTTCGCAGAGGGCCGCATACCGGCATAG
GGACGTCCTGCCTTGTGTTCGGCTTGCGCATTGCATCTTGAGCTCATCTT
AGTGGCCTCAAGTGTGTGCCCTACACCGCTGTAATGTGACCATGGTCCCC
CATGGATGTTTTGGACTGGGCCGAGAGAGAGAGAGAGAGCTCAAAAATTG
ACAAACAGAATACAAACAAAATATTGATATCAAGACTAACCAATAAAAAT
AAACAAGAATTATTTCGTGTAATGATACTAAGACAAAAATTAATGACAGG
TACACCGCGAGAGTGCTGGCGATGGAGGCTCTCGGACACGATGTTCGCTG
CGTCAGCAAAGTAACGACGCCGGGGGAACCGGACAGCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12095:1287..3076-

>mRNA_L-elsbetiae_contig12095.1756.1 ID=mRNA_L-elsbetiae_contig12095.1756.1|Name=mRNA_L-elsbetiae_contig12095.1756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig12095:1287..3076- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAAAAGGAGGGAGAAGAGGGCCGCGGATCGGGGGCACGGCCGGTC
CTTGCGGTGCACGGAGGACAACGGCCCTGACGGTCCGTCGCCGAACGGGT
TTGGGCGGCTCCGGCCCGACCTGACGAACACCCCGGCGGGAACGGCCACC
AACATGCAGCAGGCTACGGAGAAGAAGCGGAAGAGGGCCTTCGAGAAGGT
GCATCATAAGCGCGATAAGCTGGAGCTGGGGAGCGCTGAGCTGGAGAGAA
TCGCGATCCAGAAGCGACAGGAAATTCTGAGCCTTCTCTCCATCAAGATG
ATGAAAAGGAGGGAGAAGAGGGCCGCGGATCGGGGGCACGGCCGGTCCTT
GCGGTGCACGGAGGACAACGGCCCTGACGGTCCGTCGCCGAACGGGTTTG
GGCGGCTCCGGCCCGACCTGACGAACACCCCGGCGGGAACGGCCACCAAC
ATGCAGCAGGCTACGGAGAAGAAGCGGAAGAGGGCCTTCGAGAAGGTGCA
TCATAAGCGCGATAAGCTGGAGCTGGGGAGCGCTGAGCTGGAGAGAATCG
CGATCCAGAAGCGACAGGAAATTCTGAGCCTTCTCTCCATCAAGGAAGAG
ATCGTCGAGACGAGGCGGAATCGCCACCAGAGCGTGCTCTTTCTAGGCAT
GACGAGAGTGGCCGAGTACGACGTCAAGGGCGGTTTAGCTAAGGGCATGA
CACGCTTCGGCCTCGTGGAGGGGATGGTGCGCGAAGATGTGAACGAGTCC
AACATGAACCCCTTGAGGAAGAGATCGTCGAGACGAGGCGGAATCGCCAC
CAGAGCGTGCTCTTTCTAGGCATGACGAGAGTGGCCGAGTACGACGTCAA
GGGCGGTTTAGCTAAGGGCATGACACGCTTCGGCCTCGTGGAGGGGATGG
TGCGCGAAGATGTGAACGAGTCCAACATGAACCCCTTGAGGTACACCGCG
AGAGTGCTGGCGATGGAGGCTCTCGGACACGATGTTCGCTGCGTCAGCAA
AGTAACGACGCCGGGGGAACCGGACAGCGACGTACACCGCGAGAGTGCTG
GCGATGGAGGCTCTCGGACACGATGTTCGCTGCGTCAGCAAAGTAACGAC
GCCGGGGGAACCGGACAGCGAC
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