mRNA_L-elsbetiae_contig1208.1747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1208.1747.1
Unique NamemRNA_L-elsbetiae_contig1208.1747.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1208.1747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1208contigL-elsbetiae_contig1208:13380..14024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size646
Cds size588
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815407.357686-UTR-L-elsbetiae_contig1208:13379..134361622815407.357686-UTR-L-elsbetiae_contig1208:13379..13436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1208 13380..13436 +
1691682884.0798314-UTR-L-elsbetiae_contig1208:13379..134361691682884.0798314-UTR-L-elsbetiae_contig1208:13379..13436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1208 13380..13436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815407.3681297-CDS-L-elsbetiae_contig1208:13436..140241622815407.3681297-CDS-L-elsbetiae_contig1208:13436..14024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1208 13437..14024 +
1691682884.0895085-CDS-L-elsbetiae_contig1208:13436..140241691682884.0895085-CDS-L-elsbetiae_contig1208:13436..14024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1208 13437..14024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1208.1747.1prot_L-elsbetiae_contig1208.1747.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1208 13437..14024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1208.1747.1

>prot_L-elsbetiae_contig1208.1747.1 ID=prot_L-elsbetiae_contig1208.1747.1|Name=mRNA_L-elsbetiae_contig1208.1747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
MRREIAGRWCFLGSAPSFKAMCCVLVLWHLQFISYFAPKSREGVRRFGSI
PGGGDRLGRTLDRIYCTPDAWIYSACGGKRCRSAIFSRRGACFHRGQAKY
YLHRTSRAALRKQQYTAAVVRMPLVNTHGVGMYKPEASLSWVSCRCCWTI
FETSTCVSKPPTKTPGKKQKLHISAHQKFPCCSSNSVSQSSPQGRA
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mRNA from alignment at L-elsbetiae_contig1208:13380..14024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1208.1747.1 ID=mRNA_L-elsbetiae_contig1208.1747.1|Name=mRNA_L-elsbetiae_contig1208.1747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=645bp|location=Sequence derived from alignment at L-elsbetiae_contig1208:13380..14024+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGAGGATACCCAACTGGTTCGTCCGTAAGTTGTTTGTTTCAGGAGGAG
GCGAGCGATGCGGCGAGAGATCGCTGGGCGGTGGTGCTTTCTGGGGAGTG
CCCCTTCCTTTAAGGCCATGTGCTGTGTACTCGTTCTCTGGCACCTACAG
TTTATTTCCTATTTTGCGCCCAAATCCCGAGAGGGGGTCCGCAGATTCGG
TAGCATACCTGGGGGGGGAGACAGACTTGGACGAACGCTGGATCGCATCT
ATTGTACACCTGACGCTTGGATATATTCGGCATGTGGTGGGAAGCGGTGT
CGATCAGCAATTTTCTCTCGCAGGGGAGCTTGTTTCCATCGAGGGCAAGC
CAAGTATTACCTACATCGCACGTCGAGGGCAGCCTTACGGAAACAGCAGT
ATACTGCTGCTGTAGTGCGCATGCCGTTAGTCAACACACACGGCGTTGGT
ATGTACAAACCTGAAGCCTCTCTGTCTTGGGTGTCGTGCCGCTGCTGTTG
GACTATTTTTGAGACGAGCACATGTGTGTCGAAACCCCCCACCAAGACTC
CAGGGAAAAAACAAAAGCTGCACATATCCGCCCATCAAAAGTTTCCCTGT
TGTAGCAGCAACAGTGTCTCGCAATCGTCACCTCAGGGCAGAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1208:13380..14024+

>mRNA_L-elsbetiae_contig1208.1747.1 ID=mRNA_L-elsbetiae_contig1208.1747.1|Name=mRNA_L-elsbetiae_contig1208.1747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig1208:13380..14024+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCGAGAGATCGCTGGGCGGTGGTGCTTTCTGGGGAGTGCCCCTTC
CTTTAAGGCCATGTGCTGTGTACTCGTTCTCTGGCACCTACAGTTTATTT
CCTATTTTGCGCCCAAATCCCGAGAGGGGGTCCGCAGATTCGGTAGCATA
CCTGGGGGGGGAGACAGACTTGGACGAACGCTGGATCGCATCTATTGTAC
ACCTGACGCTTGGATATATTCGGCATGTGGTGGGAAGCGGTGTCGATCAG
CAATTTTCTCTCGCAGGGGAGCTTGTTTCCATCGAGGGCAAGCCAAGTAT
TACCTACATCGCACGTCGAGGGCAGCCTTACGGAAACAGCAGTATACTGC
TGCTGTAGTGCGCATGCCGTTAGTCAACACACACGGCGTTGGTATGTACA
AACCTGAAGCCTCTCTGTCTTGGGTGTCGTGCCGCTGCTGTTGGACTATT
TTTGAGACGAGCACATGTGTGTCGAAACCCCCCACCAAGACTCCAGGGAA
AAAACAAAAGCTGCACATATCCGCCCATCAAAAGTTTCCCTGTTGTAGCA
GCAACAGTGTCTCGCAATCGTCACCTCAGGGCAGAGCCATGCGGCGAGAG
ATCGCTGGGCGGTGGTGCTTTCTGGGGAGTGCCCCTTCCTTTAAGGCCAT
GTGCTGTGTACTCGTTCTCTGGCACCTACAGTTTATTTCCTATTTTGCGC
CCAAATCCCGAGAGGGGGTCCGCAGATTCGGTAGCATACCTGGGGGGGGA
GACAGACTTGGACGAACGCTGGATCGCATCTATTGTACACCTGACGCTTG
GATATATTCGGCATGTGGTGGGAAGCGGTGTCGATCAGCAATTTTCTCTC
GCAGGGGAGCTTGTTTCCATCGAGGGCAAGCCAAGTATTACCTACATCGC
ACGTCGAGGGCAGCCTTACGGAAACAGCAGTATACTGCTGCTGTAGTGCG
CATGCCGTTAGTCAACACACACGGCGTTGGTATGTACAAACCTGAAGCCT
CTCTGTCTTGGGTGTCGTGCCGCTGCTGTTGGACTATTTTTGAGACGAGC
ACATGTGTGTCGAAACCCCCCACCAAGACTCCAGGGAAAAAACAAAAGCT
GCACATATCCGCCCATCAAAAGTTTCCCTGTTGTAGCAGCAACAGTGTCT
CGCAATCGTCACCTCAGGGCAGAGCC
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