mRNA_L-elsbetiae_contig12075.1743.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12075.1743.1
Unique NamemRNA_L-elsbetiae_contig12075.1743.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12075.1743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12075contigL-elsbetiae_contig12075:645..4169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFYVE, RhoGEF and PH domain-containing protein
Ec32 orthologEc-28_001300.1
Exons4
Model size1364
Cds size1362
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12075.1743.1prot_L-elsbetiae_contig12075.1743.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12075 645..4169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815407.2534018-CDS-L-elsbetiae_contig12075:644..9031622815407.2534018-CDS-L-elsbetiae_contig12075:644..903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12075 645..903 +
1691682884.0248814-CDS-L-elsbetiae_contig12075:644..9031691682884.0248814-CDS-L-elsbetiae_contig12075:644..903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12075 645..903 +
1622815407.2699552-CDS-L-elsbetiae_contig12075:1517..18281622815407.2699552-CDS-L-elsbetiae_contig12075:1517..1828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12075 1518..1828 +
1691682884.0367699-CDS-L-elsbetiae_contig12075:1517..18281691682884.0367699-CDS-L-elsbetiae_contig12075:1517..1828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12075 1518..1828 +
1622815407.2841115-CDS-L-elsbetiae_contig12075:2309..26401622815407.2841115-CDS-L-elsbetiae_contig12075:2309..2640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12075 2310..2640 +
1691682884.046142-CDS-L-elsbetiae_contig12075:2309..26401691682884.046142-CDS-L-elsbetiae_contig12075:2309..2640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12075 2310..2640 +
1622815407.2967203-CDS-L-elsbetiae_contig12075:3708..41691622815407.2967203-CDS-L-elsbetiae_contig12075:3708..4169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12075 3709..4169 +
1691682884.0566075-CDS-L-elsbetiae_contig12075:3708..41691691682884.0566075-CDS-L-elsbetiae_contig12075:3708..4169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12075 3709..4169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12075.1743.1

>prot_L-elsbetiae_contig12075.1743.1 ID=prot_L-elsbetiae_contig12075.1743.1|Name=mRNA_L-elsbetiae_contig12075.1743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=454bp
SDEAESAAVPAAAAVTGTRGAEADGPVAGEDGASAAAETSASVEASGPLE
ASGSVGFVSEEDVVMSSSGVPSEGADVPPHAVDDAACTPVAGGVDAAPSA
DSAHHEAPAAPPTDDMGGGDAPDVLPRGGASAAAAGVSCVEAEGGDTAGA
GAVAADADADVDDDADAGAEADAAVGSLRASSGGVEQDGEVSDASGAALP
EVPQDATLPGASVVPPPPALESSGSLPAVPGDSPVPVPGTRSTADDGAAA
GASPAPGGSRPVDDGGDAAATAVIGGGLPGAVPPAGGGGVGGGVPSANAP
GGAGLELLTVPPAVKDGGTPVTSVPAVANGVGGLLQAAAAAAAAALDNDL
MPPADSVGDDAVVAPTPAAASQPAASGQEPLAGGREEPPPPLAVLAAAAA
AAAAADLETTSAVPATGAEVPPSDVAATAGADAPPAGADVPSVDPAVLLP
AGDD
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mRNA from alignment at L-elsbetiae_contig12075:645..4169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12075.1743.1 ID=mRNA_L-elsbetiae_contig12075.1743.1|Name=mRNA_L-elsbetiae_contig12075.1743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3525bp|location=Sequence derived from alignment at L-elsbetiae_contig12075:645..4169+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGACGAGGCCGAAAGCGCAGCAGTGCCGGCGGCGGCGGCGGTGACCGG
GACAAGAGGTGCCGAGGCCGATGGGCCCGTTGCTGGTGAGGACGGGGCGA
GCGCTGCCGCGGAGACCAGCGCCTCCGTGGAAGCCAGCGGCCCCTTAGAG
GCCAGCGGCTCTGTCGGCTTTGTGTCGGAGGAAGACGTGGTGATGTCTAG
CTCCGGTGTGCCGTCCGAAGGTGCGGACGTGCCGCCGCACGCGGTGGATG
ATGCAGCCTGTGAGTTACGCTGCTAGTAAAAGTCAGCTAGAAATGTTTTA
AGGAAGTTGCGTCGAGGATGAGAGCTGGGTTCAGAAAAACACCGGCCGGC
GTAATGAGTTGAGAGGCCGCGCCCCAGGTGTGCCTTGCCGCTGCCTCGCT
CCATTTTTTCTTTCTCTTTTCTTCTTCACATTTATTTCCAGTGTTCGGTG
GGCTCCCTGTCACAAGGACATCTTGCCAGAGTACTGAACCGTGGTCACAC
AGAAGGTTTCCTTTCCCCAAGGCCCCCACTCCCCTCTTCTGCAGTGCTTG
CCTAAGATTTTTGTCGCGAGAAGGGTTCAGCCGTCACTTTCCCTCGTCGA
CGGTGAGGTCTAAGTGCGTGTACACACGCTAAGCGCTATCCACTGACAGG
GACGGAAGCGAGAGAAAAACCTCACTACGCAAGAAAAAGTCGCTTCCGCT
GAGATTCGAACTCACGACCTGCCTGCTAGAAAGTGTTCGGGGGTGCCAAC
TAGACTAACGCGAATGGTGCATGCCCGGGTGCATTGCGAGTTCGAAGCTG
TCCATGATTATCCTATCTCTCTCACTCTCTTTCTCCGTGTGCCCCGTGTA
TCACCCACCGCCTCGCCTCGAAGGCACACCCGTCGCAGGTGGTGTCGACG
CCGCGCCTTCGGCGGACTCAGCCCATCACGAGGCCCCCGCCGCCCCGCCC
ACGGACGACATGGGCGGCGGAGACGCACCCGACGTCCTCCCCCGTGGCGG
CGCGAGCGCGGCGGCGGCGGGTGTGAGTTGTGTGGAAGCGGAAGGCGGTG
ACACTGCCGGTGCCGGCGCCGTGGCCGCTGATGCTGACGCTGATGTTGAT
GATGATGCTGATGCTGGTGCTGAAGCTGACGCTGCTGTCGGTTCTTTGAG
GGCCTCGTCGGGCGGCGTGGAACAGGACGGCGAGGTGAGGCAGGCCTGGG
CCGGTCCGCGGGGGTTGCGTAGTTTGATGGATGTTCTGGAGGTGTGCGTC
GGGCTTGCCCCCTTGGCTCTGGTCCCCCATCTTGGGGCAACAACAGGCCG
GTGTTTTTGATTAATTCAGCACAGGGTCGGTCGACGTTGAGAGCAGCGTG
CGCGCTTTTTTTGTTTTAACCGTGTGGGGGGGGGGAGGGGGCGTGATGTA
CGCATGTGTTTGGCACCGCTCGCTGTTGCTGTCTGCTTGCTGCGCCGTTA
CATCCACCCCAAGTTCCGCTGGCCTGGCGGAGGCGCTCCGGAAGGACTCC
ATGCATACCCCAGGGATGTACAAACTCGTATTTTCTGCTGTATGCAGCAC
GCTATTGTGAGGCCCACCAGCATGTTCCCCCAACCGTTTTTTTTTTTCTC
GCCCGACGGACGGTTGCTCCTCCGCACATCCCGCGGCCGCACCCCTTCGC
ACCGTGCTGCCGTAGGTCTCGGATGCCAGCGGTGCCGCCTTGCCCGAGGT
CCCTCAAGACGCAACGTTGCCGGGTGCTTCGGTGGTACCGCCGCCGCCGG
CGCTCGAATCAAGCGGCTCGCTGCCTGCTGTCCCGGGGGACTCACCCGTG
CCTGTGCCCGGCACGAGGTCAACGGCCGACGATGGTGCAGCAGCCGGTGC
CTCCCCCGCTCCCGGCGGCTCTCGTCCCGTGGACGACGGCGGGGATGCAG
CGGCGACGGCTGTCATCGGCGGAGGCCTTCCAGGAGCGGTGCCTCCTGCC
GGCGGCGGCGGCGTCGGCGGCGGCGTGCCGTCAGCGAATGCGCCTGGTGA
GTCAAGCCGCTCCTTTTCAGACGCGTGTGTGTATTTACCTAGGTGGGTGT
GCTGTGCAGATTCACGTCGCAAGAGTGGTGTGCGATACCTATAGATACAT
ATACGAATTGATATCTGGGAACTTCTGTTCCGAAATCTGAATCAGTAGGC
TATCGGCCTCCAATAGCCCAAAAACGCGTCAGTATGACAGCAGCTGTTTT
GAGCATGGCTGCACATGCCAGGAGACTGGACAGCTTTTGTACCTGATGAG
CCAGACCGGCACAGCTCTGTTTGGTTCAAGGGAGCGGCAGCACAGAAAAG
AAGCAGTTGTTTGTATGCACAGCAGCTGCTGCTTCGGTGCTCATAACACA
GCAGCTAGCTGCTGTTTTTTTCAGTTGTAAAATTAGGGAGTACTTCTGCT
GCCTTCGCCTGTTTGCTTTGGTCTTGCATCACCCCCTGCCGCTGTGCTCT
CATGAGCTCGCTCCGAGAGGGCGATCTTGTATGAGTATACGTTTATTTGG
CCTGAAGATGCGATGCGGGAAAGTCGCCACCCTACGTACGGCCGGAGCGA
GGACAGAGCGGGGTGCGAGAGAACACGATGTTATTGGGAGAGAGTTTGGG
CGGCGTTCATTCCGCGTTCTAAGGCGGCAGCCAGCAGCCAGAAGCCAGAA
GCATCGCGTGAAGCCGGGAATGAAGGGCGCTTGTTTTGTACCTGGGAGTC
TTTTTTGGGGTTGAACGGCAATGGCTTGAGCTTTCTCGCTGTTGTTTCTG
TCTTTCCAAGGCCTGGTCGCGTCCGTTCACTTGCTGACGTGCTCCCGCCC
ACCCAAAGTCACGTTACAGCAAGCAGTGCCTAGATGTTGAGAAACCGCTG
TCGGTTTCGAAGGCGTGGATTGAAGGCTGGCGAGTCGCGGGCTGGGGCAA
GAACTGACACCGCCGTTGATACCTCATCCGTTTTGGTCTCCCGTCTGTCT
CCCCATCTTTCTCTCTCTCTCTCTCCACCTTTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTACCTCATTCCTTGTTTTCTCCGAATTGCGATAT
ACATGCCGACGTAGGGGGCGCCGGCCTCGAGCTGCTCACGGTGCCTCCCG
CCGTCAAGGATGGCGGGACGCCAGTAACCAGCGTACCTGCCGTAGCGAAC
GGCGTGGGTGGGCTGCTTCAAGCGGCGGCGGCGGCGGCGGCGGCGGCTCT
TGACAACGATCTGATGCCGCCGGCAGACTCCGTGGGCGACGATGCGGTGG
TAGCGCCCACTCCCGCCGCTGCATCACAGCCTGCAGCCAGCGGGCAAGAG
CCTCTTGCGGGGGGCAGAGAGGAGCCGCCACCGCCGTTGGCAGTGCTGGC
GGCAGCGGCGGCGGCAGCGGCAGCGGCCGACCTCGAAACGACGAGCGCCG
TGCCAGCGACCGGCGCTGAAGTGCCACCCTCAGACGTCGCCGCCACCGCC
GGTGCAGACGCGCCCCCGGCAGGCGCCGATGTGCCGTCCGTCGACCCCGC
CGTACTGCTACCTGCTGGAGACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12075:645..4169+

>mRNA_L-elsbetiae_contig12075.1743.1 ID=mRNA_L-elsbetiae_contig12075.1743.1|Name=mRNA_L-elsbetiae_contig12075.1743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2724bp|location=Sequence derived from alignment at L-elsbetiae_contig12075:645..4169+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGACGAGGCCGAAAGCGCAGCAGTGCCGGCGGCGGCGGCGGTGACCGG
GACAAGAGGTGCCGAGGCCGATGGGCCCGTTGCTGGTGAGGACGGGGCGA
GCGCTGCCGCGGAGACCAGCGCCTCCGTGGAAGCCAGCGGCCCCTTAGAG
GCCAGCGGCTCTGTCGGCTTTGTGTCGGAGGAAGACGTGGTGATGTCTAG
CTCCGGTGTGCCGTCCGAAGGTGCGGACGTGCCGCCGCACGCGGTGGATG
ATGCAGCCTTCCGACGAGGCCGAAAGCGCAGCAGTGCCGGCGGCGGCGGC
GGTGACCGGGACAAGAGGTGCCGAGGCCGATGGGCCCGTTGCTGGTGAGG
ACGGGGCGAGCGCTGCCGCGGAGACCAGCGCCTCCGTGGAAGCCAGCGGC
CCCTTAGAGGCCAGCGGCTCTGTCGGCTTTGTGTCGGAGGAAGACGTGGT
GATGTCTAGCTCCGGTGTGCCGTCCGAAGGTGCGGACGTGCCGCCGCACG
CGGTGGATGATGCAGCCTGCACACCCGTCGCAGGTGGTGTCGACGCCGCG
CCTTCGGCGGACTCAGCCCATCACGAGGCCCCCGCCGCCCCGCCCACGGA
CGACATGGGCGGCGGAGACGCACCCGACGTCCTCCCCCGTGGCGGCGCGA
GCGCGGCGGCGGCGGGTGTGAGTTGTGTGGAAGCGGAAGGCGGTGACACT
GCCGGTGCCGGCGCCGTGGCCGCTGATGCTGACGCTGATGTTGATGATGA
TGCTGATGCTGGTGCTGAAGCTGACGCTGCTGTCGGTTCTTTGAGGGCCT
CGTCGGGCGGCGTGGAACAGGACGGCGAGGCACACCCGTCGCAGGTGGTG
TCGACGCCGCGCCTTCGGCGGACTCAGCCCATCACGAGGCCCCCGCCGCC
CCGCCCACGGACGACATGGGCGGCGGAGACGCACCCGACGTCCTCCCCCG
TGGCGGCGCGAGCGCGGCGGCGGCGGGTGTGAGTTGTGTGGAAGCGGAAG
GCGGTGACACTGCCGGTGCCGGCGCCGTGGCCGCTGATGCTGACGCTGAT
GTTGATGATGATGCTGATGCTGGTGCTGAAGCTGACGCTGCTGTCGGTTC
TTTGAGGGCCTCGTCGGGCGGCGTGGAACAGGACGGCGAGGTCTCGGATG
CCAGCGGTGCCGCCTTGCCCGAGGTCCCTCAAGACGCAACGTTGCCGGGT
GCTTCGGTGGTACCGCCGCCGCCGGCGCTCGAATCAAGCGGCTCGCTGCC
TGCTGTCCCGGGGGACTCACCCGTGCCTGTGCCCGGCACGAGGTCAACGG
CCGACGATGGTGCAGCAGCCGGTGCCTCCCCCGCTCCCGGCGGCTCTCGT
CCCGTGGACGACGGCGGGGATGCAGCGGCGACGGCTGTCATCGGCGGAGG
CCTTCCAGGAGCGGTGCCTCCTGCCGGCGGCGGCGGCGTCGGCGGCGGCG
TGCCGTCAGCGAATGCGCCTGGTCTCGGATGCCAGCGGTGCCGCCTTGCC
CGAGGTCCCTCAAGACGCAACGTTGCCGGGTGCTTCGGTGGTACCGCCGC
CGCCGGCGCTCGAATCAAGCGGCTCGCTGCCTGCTGTCCCGGGGGACTCA
CCCGTGCCTGTGCCCGGCACGAGGTCAACGGCCGACGATGGTGCAGCAGC
CGGTGCCTCCCCCGCTCCCGGCGGCTCTCGTCCCGTGGACGACGGCGGGG
ATGCAGCGGCGACGGCTGTCATCGGCGGAGGCCTTCCAGGAGCGGTGCCT
CCTGCCGGCGGCGGCGGCGTCGGCGGCGGCGTGCCGTCAGCGAATGCGCC
TGGGGGCGCCGGCCTCGAGCTGCTCACGGTGCCTCCCGCCGTCAAGGATG
GCGGGACGCCAGTAACCAGCGTACCTGCCGTAGCGAACGGCGTGGGTGGG
CTGCTTCAAGCGGCGGCGGCGGCGGCGGCGGCGGCTCTTGACAACGATCT
GATGCCGCCGGCAGACTCCGTGGGCGACGATGCGGTGGTAGCGCCCACTC
CCGCCGCTGCATCACAGCCTGCAGCCAGCGGGCAAGAGCCTCTTGCGGGG
GGCAGAGAGGAGCCGCCACCGCCGTTGGCAGTGCTGGCGGCAGCGGCGGC
GGCAGCGGCAGCGGCCGACCTCGAAACGACGAGCGCCGTGCCAGCGACCG
GCGCTGAAGTGCCACCCTCAGACGTCGCCGCCACCGCCGGTGCAGACGCG
CCCCCGGCAGGCGCCGATGTGCCGTCCGTCGACCCCGCCGTACTGCTACC
TGCTGGAGACGACGGGGCGCCGGCCTCGAGCTGCTCACGGTGCCTCCCGC
CGTCAAGGATGGCGGGACGCCAGTAACCAGCGTACCTGCCGTAGCGAACG
GCGTGGGTGGGCTGCTTCAAGCGGCGGCGGCGGCGGCGGCGGCGGCTCTT
GACAACGATCTGATGCCGCCGGCAGACTCCGTGGGCGACGATGCGGTGGT
AGCGCCCACTCCCGCCGCTGCATCACAGCCTGCAGCCAGCGGGCAAGAGC
CTCTTGCGGGGGGCAGAGAGGAGCCGCCACCGCCGTTGGCAGTGCTGGCG
GCAGCGGCGGCGGCAGCGGCAGCGGCCGACCTCGAAACGACGAGCGCCGT
GCCAGCGACCGGCGCTGAAGTGCCACCCTCAGACGTCGCCGCCACCGCCG
GTGCAGACGCGCCCCCGGCAGGCGCCGATGTGCCGTCCGTCGACCCCGCC
GTACTGCTACCTGCTGGAGACGAC
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