mRNA_L-elsbetiae_contig12073.1742.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12073.1742.1
Unique NamemRNA_L-elsbetiae_contig12073.1742.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: D7FV71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV71_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 5.790e-44
Identity = 99/166 (59.64%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  129 MSLPATSGGSY--KRPLE-------GASAGSPRSNFPRFEPPPPT-----TEAEVNSNGDRDPYGEGSEIFDEAHLPNDTMATVLALQKEFYGDGKNSAPGGSRPSGERTGVVLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVVS 584
            MS P  S G+   KRPLE          + S R+   +FEPPP        +    SN  +D YG+ S+IFD A LPNDTMATVL+LQ+EFYG      P GS   GERTGVVLQ QIYTVLENRTAVD+ELTAMRK+NVLRTFRLGTGREDW +MST HYLRV+S
Sbjct:    1 MSAPRNSDGTSGRKRPLEPPRGDEEAPQSLSRRTPSRQFEPPPSAGDLIRDDGNSKSNDGQDQYGDESDIFDVADLPNDTMATVLSLQREFYG---GQPPTGS--VGERTGVVLQHQIYTVLENRTAVDVELTAMRKENVLRTFRLGTGREDWGIMSTAHYLRVIS 161          
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: U5D8H4_AMBTC (Uncharacterized protein n=4 Tax=Amborella trichopoda TaxID=13333 RepID=U5D8H4_AMBTC)

HSP 1 Score: 62.8 bits (151), Expect = 6.990e-8
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  423 VLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVVSPRSRCSRVQTAKGQCD 632
            VL+ Q+Y+ + +RT VD EL ++RKDNV+R F+L TG++D A+M  E YL  V   S   R++ AKGQ D
Sbjct:   58 VLRSQVYSSVNDRTQVDRELESLRKDNVIRLFKLNTGQDDHAIMFIEDYLNQVE--SAMKRIK-AKGQDD 124          
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: A0A2U1MEB6_ARTAN (Serine-threonine protein kinase n=2 Tax=Anthemideae TaxID=102810 RepID=A0A2U1MEB6_ARTAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.940e-7
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = 3
Query:  318 NDTMATVLALQKEFYGDGKNSAPGGSRPSGERTGV---VLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVVSPRSRCSRVQTAKGQC 629
            NDTM  +  +Q++F             P  ++  V   +L+ Q+Y+ +++RT VD EL ++R+D VLR F+L TG++D A+M  E YL  +    R  +    K QC
Sbjct:   45 NDTMVALRMMQQQF-------------PRNQKVTVEPFILRSQLYSSVKDRTQVDRELESLRRDKVLRVFKLNTGQDDHAVMFMEDYLNQMK---RAVKSMETKKQC 135          
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: A0A6P5E978_ANACO (serine/threonine-protein kinase 19 isoform X1 n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5E978_ANACO)

HSP 1 Score: 60.5 bits (145), Expect = 4.790e-7
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  243 AEVNSNGDRDPYGEGSEIFDEAHLP-NDTMATVLALQKEFYGDGKNSAPGGSRPSGERTGV---VLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVVSPRSRCSRVQTAKGQCDQHD 641
            A+ NSN D DP      +  E +L  +DT+  +  ++ +F             PS E+  +   +LQ Q+Y+ +++RT VD +L +++K+ VLR F+L TG++D A+M  E YL+ ++  S   R +  K    QHD
Sbjct:   21 ADSNSNADSDPR---QALGLENNLTFSDTLVALQMMRSQF-------------PSVEKVTIQPFILQSQLYSSVKDRTQVDRDLESLKKEKVLRVFKLSTGQDDHAIMFMEDYLKQMA--SSVKRFEKEK----QHD 135          
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: A0A2Z7AI59_9LAMI (Serine/threonine-protein kinase 19 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AI59_9LAMI)

HSP 1 Score: 59.3 bits (142), Expect = 1.180e-6
Identity = 33/101 (32.67%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  288 SEIFDEAHLPNDTMATVLALQKEFYGDGKNSAPGGSRPSGERTGV---VLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVV 581
            S  FDE    +DT+  +  ++ +F             P+GE+  V   VL+ Q+Y+ + +RT VD +L ++R+D VLR F+L TG++D A+M  + Y+  +
Sbjct:   33 SSSFDEDFAFSDTLVALQMMRAQF-------------PAGEKVPVRPFVLRSQLYSSVIDRTQVDRDLESLRRDRVLRVFKLNTGQDDHAIMFMDDYVNQI 120          
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: A0A1U8GYA2_CAPAN (serine/threonine-protein kinase 19 isoform X1 n=6 Tax=Capsicum TaxID=4071 RepID=A0A1U8GYA2_CAPAN)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-6
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  318 NDTMATVLALQKEFYGDGKNSAPGGSRPSGERTGVVLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVVSPRSRCSRVQTAKGQC 629
            +DT+  +  ++ +F    K S P            +L+ Q+Y+ +++RT VD EL ++R++ VLRTF+L TG++D A+M  + Y   +   S+    Q  +G C
Sbjct:   44 SDTLVALRMMRAQFPRIEKVSIPP----------FILRSQLYSSVKDRTQVDRELESLRREGVLRTFKLNTGQDDHAIMFLDDYFSQIERISKRLEAQKLEGLC 137          
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: M1CE84_SOLTU (Serine/threonine-protein kinase n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1CE84_SOLTU)

HSP 1 Score: 57.4 bits (137), Expect = 1.400e-6
Identity = 26/67 (38.81%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  423 VLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVVSPRSRCSRVQTAKG 623
            +L+ Q+Y+ +++RT VD EL ++R++ VLRTF+L TG++D A+M  + YL  +   S+    Q  +G
Sbjct:   66 ILRSQLYSSVKDRTQVDRELESLRREGVLRTFKLSTGQDDHAIMFLDDYLSQIERVSKRLETQKQEG 132          
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: A0A452XJ25_AEGTS (Uncharacterized protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A452XJ25_AEGTS)

HSP 1 Score: 56.6 bits (135), Expect = 1.410e-6
Identity = 24/53 (45.28%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  423 VLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVV 581
            +LQ Q+Y+ +++RT VD +L +++KD VLR F+L TG++D A+M  + YL+ V
Sbjct:   71 ILQSQLYSSVKDRTQVDRDLESLKKDRVLRVFKLNTGQDDHAIMFMDDYLKQV 123          
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: A0A8M8V355_SESIN (uncharacterized protein LOC105163428 isoform X3 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A8M8V355_SESIN)

HSP 1 Score: 58.2 bits (139), Expect = 2.050e-6
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  423 VLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVV 581
            VLQ Q+Y+ +++RT VD EL ++R+D +LR F+L TG++D A+M TE YL  +
Sbjct:   70 VLQSQLYSSIKDRTQVDRELESLRRDKLLRMFKLTTGQDDHAVMFTEDYLNQI 122          
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Match: A0A251TVS1_HELAN (Putative serine-threonine protein kinase n=4 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TVS1_HELAN)

HSP 1 Score: 58.5 bits (140), Expect = 2.150e-6
Identity = 36/121 (29.75%), Postives = 63/121 (52.07%), Query Frame = 3
Query:  228 PPTTEAEVNSNGDRDPYGEGSEIFDEAHLPNDTMATVLALQKEFYGDGKNSAPGGSRPSGERTGV---VLQQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRVV 581
            P T+     S  +  P    S   ++  + +DTM  +  ++ +F             P  ++  V   +LQ Q+Y+ +++RT VD EL ++R++ VLR F+L TG++D ALM  E YL+ +
Sbjct:    8 PSTSRKRSRSEDNSAPESNQSHSLEDNLIFSDTMVALQMMRAQF-------------PRIDKVSVEPFILQSQLYSSVKDRTQVDRELESLRREKVLRVFKLNTGQDDHALMFMEDYLKQM 115          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12073.1742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV71_ECTSI5.790e-4459.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
U5D8H4_AMBTC6.990e-848.57Uncharacterized protein n=4 Tax=Amborella trichopo... [more]
A0A2U1MEB6_ARTAN1.940e-733.64Serine-threonine protein kinase n=2 Tax=Anthemidea... [more]
A0A6P5E978_ANACO4.790e-732.12serine/threonine-protein kinase 19 isoform X1 n=4 ... [more]
A0A2Z7AI59_9LAMI1.180e-632.67Serine/threonine-protein kinase 19 n=1 Tax=Dorcoce... [more]
A0A1U8GYA2_CAPAN1.190e-630.77serine/threonine-protein kinase 19 isoform X1 n=6 ... [more]
M1CE84_SOLTU1.400e-638.81Serine/threonine-protein kinase n=1 Tax=Solanum tu... [more]
A0A452XJ25_AEGTS1.410e-645.28Uncharacterized protein n=3 Tax=Triticinae TaxID=1... [more]
A0A8M8V355_SESIN2.050e-649.06uncharacterized protein LOC105163428 isoform X3 n=... [more]
A0A251TVS1_HELAN2.150e-629.75Putative serine-threonine protein kinase n=4 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12073contigL-elsbetiae_contig12073:4744..5739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue4.2e-39
Seed eggNOG ortholog2880.D7FV71
Preferred nameSTK19
KEGG koko:K08880
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0031974,GO:0031981,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs296WV@1,2RDW5@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Ec32 ortholog descriptionSerine-threonine protein kinase 19
Ec32 orthologEc-12_007320.1
Exons2
Model size828
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12073.1742.1prot_L-elsbetiae_contig12073.1742.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12073 4872..5576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815407.0935032-UTR-L-elsbetiae_contig12073:4743..48711622815407.0935032-UTR-L-elsbetiae_contig12073:4743..4871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12073 4744..4871 +
1691682883.9773207-UTR-L-elsbetiae_contig12073:4743..48711691682883.9773207-UTR-L-elsbetiae_contig12073:4743..4871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12073 4744..4871 +
1622815407.1643448-UTR-L-elsbetiae_contig12073:5576..57391622815407.1643448-UTR-L-elsbetiae_contig12073:5576..5739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12073 5577..5739 +
1691682884.014567-UTR-L-elsbetiae_contig12073:5576..57391691682884.014567-UTR-L-elsbetiae_contig12073:5576..5739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12073 5577..5739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815407.1077886-CDS-L-elsbetiae_contig12073:4871..51821622815407.1077886-CDS-L-elsbetiae_contig12073:4871..5182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12073 4872..5182 +
1691682883.9894981-CDS-L-elsbetiae_contig12073:4871..51821691682883.9894981-CDS-L-elsbetiae_contig12073:4871..5182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12073 4872..5182 +
1622815407.1505687-CDS-L-elsbetiae_contig12073:5350..55761622815407.1505687-CDS-L-elsbetiae_contig12073:5350..5576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12073 5351..5576 +
1691682884.0003343-CDS-L-elsbetiae_contig12073:5350..55761691682884.0003343-CDS-L-elsbetiae_contig12073:5350..5576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12073 5351..5576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12073.1742.1

>prot_L-elsbetiae_contig12073.1742.1 ID=prot_L-elsbetiae_contig12073.1742.1|Name=mRNA_L-elsbetiae_contig12073.1742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MSLPATSGGSYKRPLEGASAGSPRSNFPRFEPPPPTTEAEVNSNGDRDPY
GEGSEIFDEAHLPNDTMATVLALQKEFYGDGKNSAPGGSRPSGERTGVVL
QQQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWALMSTEHYLRV
VSPRSRCSRVQTAKGQCDQHDGDQHGVV*
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mRNA from alignment at L-elsbetiae_contig12073:4744..5739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12073.1742.1 ID=mRNA_L-elsbetiae_contig12073.1742.1|Name=mRNA_L-elsbetiae_contig12073.1742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig12073:4744..5739+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGTTCGGCCGGGGCAAGTGGACAGGTTTGCTAGCAACAGAGTCCAGCC ACGGCCCACATCAGGTTACCCAGCTGCCACGCGGAAGCACAGTCAGTAGT CCTGCGCAGCAGTGTGCTCGATAATTTCATGAGTTTGCCTGCAACAAGCG GCGGTAGCTACAAACGACCGCTTGAGGGAGCCTCGGCCGGATCTCCACGT TCAAACTTCCCTCGATTTGAACCACCGCCGCCCACCACCGAGGCAGAAGT TAATAGCAATGGCGATCGCGATCCGTACGGAGAGGGCTCCGAAATCTTCG ATGAGGCCCACCTGCCAAACGACACTATGGCAACAGTGTTAGCCCTGCAA AAAGAGTTCTATGGCGATGGGAAAAACTCCGCTCCTGGTGGATCAAGACC GAGCGGGGAACGCACGGGCGTAGTCCTGCAGCAGCAGATGTAAGCACCAC CACTGCCGATTGAGAGGATTGCTTGCCACCTTGCCAGACCCATACACACA GCAGTACCAACGTACCACCATACATAGTCTATGTACGGAGGTCCAGCTTC TGCCATATGGCACACCGGCCATCTCTTTCTGCCTTTCATCCCAAACTTTT TCTACAGCTACACCGTGCTCGAGAACAGGACGGCGGTCGATCTTGAGCTT ACGGCTATGCGCAAAGACAACGTCCTCAGAACTTTCCGGCTTGGGACTGG TCGTGAAGACTGGGCGCTCATGAGCACGGAGCACTACCTCCGAGTGGTGA GCCCCCGGTCGCGTTGTTCGCGTGTTCAAACAGCAAAAGGGCAGTGCGAT CAACATGATGGCGATCAACACGGCGTCGTCTAGATAGTCTTAGATACAAG GGCTTTGGACGCGGGGGCCTACCGCCCCCCCCGTCCTCCGGTTTCATGGC CTACCGGCCCCACCGTCCTCCGGTTTCATGGAGCCTGGCATATTGCGATG GGTGGTTACATTGGTTACCAAGGGTAACACATTTGAGACGGGAAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12073:4744..5739+

>mRNA_L-elsbetiae_contig12073.1742.1 ID=mRNA_L-elsbetiae_contig12073.1742.1|Name=mRNA_L-elsbetiae_contig12073.1742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig12073:4744..5739+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTTTGCCTGCAACAAGCGGCGGTAGCTACAAACGACCGCTTGAGGG
AGCCTCGGCCGGATCTCCACGTTCAAACTTCCCTCGATTTGAACCACCGC
CGCCCACCACCGAGGCAGAAGTTAATAGCAATGGCGATCGCGATCCGTAC
GGAGAGGGCTCCGAAATCTTCGATGAGGCCCACCTGCCAAACGACACTAT
GGCAACAGTGTTAGCCCTGCAAAAAGAGTTCTATGGCGATGGGAAAAACT
CCGCTCCTGGTGGATCAAGACCGAGCGGGGAACGCACGGGCGTAGTCCTG
CAGCAGCAGATATGAGTTTGCCTGCAACAAGCGGCGGTAGCTACAAACGA
CCGCTTGAGGGAGCCTCGGCCGGATCTCCACGTTCAAACTTCCCTCGATT
TGAACCACCGCCGCCCACCACCGAGGCAGAAGTTAATAGCAATGGCGATC
GCGATCCGTACGGAGAGGGCTCCGAAATCTTCGATGAGGCCCACCTGCCA
AACGACACTATGGCAACAGTGTTAGCCCTGCAAAAAGAGTTCTATGGCGA
TGGGAAAAACTCCGCTCCTGGTGGATCAAGACCGAGCGGGGAACGCACGG
GCGTAGTCCTGCAGCAGCAGATCTACACCGTGCTCGAGAACAGGACGGCG
GTCGATCTTGAGCTTACGGCTATGCGCAAAGACAACGTCCTCAGAACTTT
CCGGCTTGGGACTGGTCGTGAAGACTGGGCGCTCATGAGCACGGAGCACT
ACCTCCGAGTGGTGAGCCCCCGGTCGCGTTGTTCGCGTGTTCAAACAGCA
AAAGGGCAGTGCGATCAACATGATGGCGATCAACACGGCGTCGTCTAGCT
ACACCGTGCTCGAGAACAGGACGGCGGTCGATCTTGAGCTTACGGCTATG
CGCAAAGACAACGTCCTCAGAACTTTCCGGCTTGGGACTGGTCGTGAAGA
CTGGGCGCTCATGAGCACGGAGCACTACCTCCGAGTGGTGAGCCCCCGGT
CGCGTTGTTCGCGTGTTCAAACAGCAAAAGGGCAGTGCGATCAACATGAT
GGCGATCAACACGGCGTCGTCTAG
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