mRNA_L-elsbetiae_contig12068.1737.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12068.1737.1
Unique NamemRNA_L-elsbetiae_contig12068.1737.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: D8LMW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 4.040e-98
Identity = 169/209 (80.86%), Postives = 181/209 (86.60%), Query Frame = 1
Query:    1 KREHFMAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGIFASDQPDPTADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNRASRAAPSLSDLKETLFGAI--EPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELCAVVGKGDGKSPALDKLKVVLENLC 621
            KREHFMAA DV TAAALQLMSMA+KGK+EGVLVATVTVPVNAT GE+ATEAFSVSNQTVQMFSEG+    QP+PTA RV TTA VKEG KET TPETLGLICNVAIVQH+G LQTRFPS+NR+  A  SLSDLKE LFG I  +   KN+KK KQPSFL RLSDFQLL+FLSRQMGFSRDFEELC+VV K DGKSPALDKLKVVLENLC
Sbjct:  270 KREHFMAAADVATAAALQLMSMADKGKEEGVLVATVTVPVNATTGEMATEAFSVSNQTVQMFSEGVLGHHQPEPTAGRVATTAAVKEGSKETTTPETLGLICNVAIVQHEGVLQTRFPSANRSKAA--SLSDLKECLFGKIGSKAAAKNQKKQKQPSFLKRLSDFQLLLFLSRQMGFSRDFEELCSVVQKRDGKSPALDKLKVVLENLC 476          
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: A0A6A5BNB2_NAEFO (MPN domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BNB2_NAEFO)

HSP 1 Score: 72.0 bits (175), Expect = 4.990e-10
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  130 DGEVATEAFSVSNQTVQMFSEGIFASDQPDPT-ADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNR-ASRAAPSLSDLKETLFGAIEPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELC-AVVGKGDGKSPALDKL 597
            +G++  EA+ VS Q V+++ +G+    +P PT  + + T   V+   K T   + L L+ NVAI  H+G     FP  NR  + A  S+ +LK+ L            + K+  F++R+SDF LL+FL+  +  + DF +LC A+  K + ++   + L
Sbjct:  281 EGKIVFEAYQVSKQCVELWEKGLL---EPHPTNPEFIITKKQVEVERKMTNEIDALLLVSNVAIASHQGNFLVGFPPRNRPGNEALQSMDELKQVLL-----------ERKKQKFVDRVSDFDLLLFLTDYLSLTSDFPDLCEAICSKNNARASGFEAL 425          
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: A0A6P5HLK7_ANACO (NPL4-like protein n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5HLK7_ANACO)

HSP 1 Score: 70.1 bits (170), Expect = 2.040e-9
Identity = 65/215 (30.23%), Postives = 102/215 (47.44%), Query Frame = 1
Query:    7 EHFMAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDGEVAT------EAFSVSNQTVQMFSEGIFASD---QPDPTADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNRASRAAPSLSDLKETLFGAIEPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELCAVVGKGDGKSPALDKLKVVLENLCA 624
            E+ ++  +V+ AA LQ    AE G  E V  A V + V A DG  A       EAF +S+  V++F +G+F ++     DP   R+T   VV  GGK+T+  +    +  V I  H+G L + FP  NR +                +   K +  + K   F+ R+SDF LL+ LSR +  + D   L   V K   + P  +  ++++E+L A
Sbjct:  231 EYTLSGREVLQAAELQ----AEGGIPEWV-TAVVKLEVVAEDGGAAASADVHFEAFQMSDNCVKLFKDGLFVTEFGEDDDPRLSRMTKDVVV--GGKDTREVDNDFFLVPVKIADHQGPLSSSFPIENRMTMVT-------------LRALKTHLDRTKHLPFVKRISDFHLLLLLSRFLDVNADVPALAECVQK---QGPVSEGYQLLIESLAA 422          
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: H3GFY1_PHYRM (Uridine kinase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFY1_PHYRM)

HSP 1 Score: 70.1 bits (170), Expect = 3.300e-9
Identity = 58/183 (31.69%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   10 HFMAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGIFASDQPDPTADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNRASRAAPSLSDLKETLFGAIEPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELCAVV 558
            HF +A +V+ AA LQ    A+ G  E + + T+ V ++  +G+ + EAF VS+Q V+MF+ G+ A ++ +P A  V  T  V    K  K  +    +C V ++ H+  L+  FP  NR            E  +      K   +K +   +  RLSDFQLLVFLS  +    D   +C  V
Sbjct:  243 HF-SAREVLLAAQLQ----ADAGGKESLFL-TLKVTLDK-EGQASFEAFQVSDQCVEMFAAGVLAENEQNPKACAVNDTFTVLVEAKPAKEVDNNFFLCVVPVLPHESTLRCEFPKLNR------------EGSYRNRAALKTQLQKYRNEPYAKRLSDFQLLVFLSDFLDVQTDIPVICQAV 406          
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: B5Y563_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y563_PHATC)

HSP 1 Score: 68.9 bits (167), Expect = 5.530e-9
Identity = 62/206 (30.10%), Postives = 95/206 (46.12%), Query Frame = 1
Query:    1 KREHFMAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGIFASDQPDPTADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNRASRAAPSLSDLKETLFGAIEPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELCAVVGKGDGKSPALDKLKVVLENL 618
            ++ + ++A + + AA  QL +    G  E     TVTV     DG+VA EAF VS Q + M +E     D  +P   +V  T    + GK + T ET   +  V IVQH    +T      RA+R     +  K+ L   +     N   L     ++RL+DF LL++L     F  DF ++CA +   D   P  D  K+++ +L
Sbjct:  274 RQGYVLSAAETILAAEFQLEAA---GGVEETPFCTVTVAPKL-DGQVAVEAFQVSQQCMAMVAEEALQVDPDNPQLCKVNETFTAIQEGKASPTVETAFFLTVVPIVQHTS--ETFVADFPRANRDLDDTAPNKDALTRQLRQAGSNGWTL-----VDRLADFNLLIYLKSSFDFQSDFPKICAAIANRD--IPLDDGYKLLIASL 466          
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: A0A5D6XRK4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRK4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.060e-8
Identity = 57/180 (31.67%), Postives = 89/180 (49.44%), Query Frame = 1
Query:   10 HFMAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGIFASDQPDPTADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNRASRAAPSLSDLKETLFGAIEPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELC 549
            HF +A +V+ AA LQ    A+ G  + + V T+ V ++  DG+ + EAF VS+Q V+MFS G     + DP +  +  T       K   T +    +C V +  H+  L++ FP  NR   +  S + LKE L           ++ +   F+ R+SDFQLLVFL+  +    D   +C
Sbjct:  243 HF-SAHEVLLAAQLQ----ADAGGSDSLFV-TLKVTLDK-DGQASFEAFQVSDQCVEMFSAGALVEHEEDPKSCGIAATFTALVEAKPAPTVDNNFFLCVVPVATHESGLKSDFPKLNRED-SVRSRAALKEQL-----------QRYRSEDFVQRISDFQLLVFLADFLDPHSDIPAIC 403          
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: A0A3F2RPU0_9STRA (Uridine kinase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RPU0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.240e-8
Identity = 58/183 (31.69%), Postives = 86/183 (46.99%), Query Frame = 1
Query:   10 HFMAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGIFASDQPDPTADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNRASRAAPSLSDLKETLFGAIEPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELCAVV 558
            HF +A +V+ AA LQ    A+ G  +G L  T+ V ++  +G+ + EAF VS+Q V+MF+ G    ++ +P A  V  T       K  K  +    +C V +V H+  L+  FP  NR            E  F      K   +K +   +  R+SDFQLLVFLS  +    D   +C  V
Sbjct:  243 HF-SAREVLLAAQLQ----ADAG-GKGSLFLTLKVTLDK-EGQASFEAFQVSDQCVEMFAAGALEENEENPKACGVPGTFTALVEAKPAKEVDNNFFLCVVPVVPHESALRCEFPKLNR------------EGSFRNRAALKAQLQKYRNEPYAKRISDFQLLVFLSEFLDVKTDIPVICQAV 406          
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: A0A1V9ZZB3_9STRA (NDK domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZB3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.480e-8
Identity = 61/204 (29.90%), Postives = 98/204 (48.04%), Query Frame = 1
Query:   10 HFMAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDGEVATEAFSVSNQTVQMFSEGIFASDQPDPTADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNRAS--RAAPSLSDLKETLFGAIEPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELCAVVGKGDGKSPALDKLKVVLEN 615
            HF ++ +V+ AA LQL    + G  +   V TV V ++  +G+ + EAF VS+Q + MFS G    ++ +PT+ +V  T       K TK  +    +C V +  H   L + FP  NR    R   +L +     FG+ +P            ++NRL DFQLLVFLS  +  + D   +C  +   D   P  D  ++++ +
Sbjct:  253 HF-SSREVMLAAQLQL----DAGGPKSPFV-TVKVTLDK-EGQASFEAFQVSDQCLDMFSAGALLENEENPTSCKVHETFTALVEMKPTKEVDNNFFLCVVPVSNHTSPLASEFPPLNREGSIRTRQTLKNYFRK-FGSNQP------------YVNRLKDFQLLVFLSDFLDINTDIPIICQRILSSD--EPLEDAYQILINS 434          
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: F6HQ30_VITVI (MPN domain-containing protein n=4 Tax=Vitis vinifera TaxID=29760 RepID=F6HQ30_VITVI)

HSP 1 Score: 65.1 bits (157), Expect = 8.180e-8
Identity = 62/212 (29.25%), Postives = 103/212 (48.58%), Query Frame = 1
Query:    1 KREHFMAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDG-EVATEAFSVSNQTVQMFSEGIFASD---QPDPTADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNRASRAAPSLSDLKETLFGAIEPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELCAVVGKGDGKSPALDKLKVVLENLCA 624
            K+++ M+ ++V+ AA L      E G  E V  A V + VN  DG +V  EAF +S+  V++F EG F +D   + DP   R+    VV  G K+T+  +    +  V I+ H+G L + FP  NR ++               +   K +  + K   F+ R+SDF LL+ LSR +  + D   L   V     +S   +  ++++E+L +
Sbjct:  221 KKDYTMSNSEVLQAAELH----GESGLKEWV-TAVVKLTVNEDDGADVHFEAFQMSDMCVRLFKEGWFETDIGEEVDPKLSRMKKDVVV--GVKDTREVDNDFFLVLVKILDHQGPLSSTFPIENRITQVT-------------MRALKNHLDRAKNLPFVKRISDFHLLLLLSRFLDINSDVPALAECV---QTQSAVPEGYQLLIESLAS 409          
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Match: UPI000E701E40 (NPL4-like protein 1 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E701E40)

HSP 1 Score: 62.8 bits (151), Expect = 1.530e-7
Identity = 61/190 (32.11%), Postives = 88/190 (46.32%), Query Frame = 1
Query:    1 KREHFMAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDG-EVATEAFSVSNQTVQMFSEGIFASD---QPDPTADRVTTTAVVKEGGKETKTPETLGLICNVAIVQHKGKLQTRFPSSNRASRAAPSLSDLKETLFGAIEPTKKNKKKLKQPSFLNRLSDFQLLVFLSRQMGFSRDFEELCAVV 558
            K+++ ++ ++V+ AA L      E G  E V  A V + VN   G +V  EAF +S+  V++F EG F +D     DP   R+    VV  G K+ K  +    +  V I+ H+G L T FP  NR +   P                K +  K K   F+ R+SDF LL+ LSR    + D   LC  V
Sbjct:   54 KKDYTLSNSEVLQAAELH----GESGLKEWV-TALVKLKVNEEGGADVHFEAFQMSDICVKLFKEGWFETDCGGDYDPKVSRMKKEVVV--GVKDVKEVDNDFFLVVVKILDHQGPLSTSFPVENRITSIPP-------------RALKTHLDKAKSLPFVRRISDFHLLLLLSRFFDVNSDVPALCQCV 223          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12068.1737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMW6_ECTSI4.040e-9880.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6A5BNB2_NAEFO4.990e-1030.82MPN domain-containing protein n=2 Tax=Naegleria Ta... [more]
A0A6P5HLK7_ANACO2.040e-930.23NPL4-like protein n=2 Tax=Ananas comosus TaxID=461... [more]
H3GFY1_PHYRM3.300e-931.69Uridine kinase n=1 Tax=Phytophthora ramorum TaxID=... [more]
B5Y563_PHATC5.530e-930.10Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A5D6XRK4_9STRA2.060e-831.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3F2RPU0_9STRA4.240e-831.69Uridine kinase n=1 Tax=Phytophthora kernoviae TaxI... [more]
A0A1V9ZZB3_9STRA6.480e-829.90NDK domain-containing protein n=1 Tax=Thraustothec... [more]
F6HQ30_VITVI8.180e-829.25MPN domain-containing protein n=4 Tax=Vitis vinife... [more]
UPI000E701E401.530e-732.11NPL4-like protein 1 n=1 Tax=Papaver somniferum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12068contigL-elsbetiae_contig12068:2765..5761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue3.6e-10
Seed eggNOG ortholog164328.Phyra74664
KEGG rclassRC00002,RC00017
KEGG koko:K00876,ko:K14015
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,ko04141,map00240,map00983,map01100,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031625,GO:0032182,GO:0033554,GO:0034976,GO:0036503,GO:0042175,GO:0042221,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.Nuclear pore localisation protein NPL4
EggNOG OGs3QAE2@4776,COG0572@1,COG5100@1,KOG2834@2759,KOG4203@2759
EC2.7.1.48
COG Functional cat.UY
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons5
Model size1243
Cds size612
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.9633934-UTR-L-elsbetiae_contig12068:2764..33801622815404.9633934-UTR-L-elsbetiae_contig12068:2764..3380Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12068 2765..3380 -
1691682883.470347-UTR-L-elsbetiae_contig12068:2764..33801691682883.470347-UTR-L-elsbetiae_contig12068:2764..3380Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12068 2765..3380 -
1622815406.4371674-UTR-L-elsbetiae_contig12068:5746..57611622815406.4371674-UTR-L-elsbetiae_contig12068:5746..5761Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12068 5747..5761 -
1691682883.5310647-UTR-L-elsbetiae_contig12068:5746..57611691682883.5310647-UTR-L-elsbetiae_contig12068:5746..5761Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12068 5747..5761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.9742901-CDS-L-elsbetiae_contig12068:3380..34911622815404.9742901-CDS-L-elsbetiae_contig12068:3380..3491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 3381..3491 -
1691682883.4872513-CDS-L-elsbetiae_contig12068:3380..34911691682883.4872513-CDS-L-elsbetiae_contig12068:3380..3491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 3381..3491 -
1622815406.2639852-CDS-L-elsbetiae_contig12068:3750..39191622815406.2639852-CDS-L-elsbetiae_contig12068:3750..3919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 3751..3919 -
1691682883.4959962-CDS-L-elsbetiae_contig12068:3750..39191691682883.4959962-CDS-L-elsbetiae_contig12068:3750..3919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 3751..3919 -
1622815406.3646057-CDS-L-elsbetiae_contig12068:4249..43631622815406.3646057-CDS-L-elsbetiae_contig12068:4249..4363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 4250..4363 -
1691682883.5051003-CDS-L-elsbetiae_contig12068:4249..43631691682883.5051003-CDS-L-elsbetiae_contig12068:4249..4363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 4250..4363 -
1622815406.3770826-CDS-L-elsbetiae_contig12068:4870..49651622815406.3770826-CDS-L-elsbetiae_contig12068:4870..4965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 4871..4965 -
1691682883.5133402-CDS-L-elsbetiae_contig12068:4870..49651691682883.5133402-CDS-L-elsbetiae_contig12068:4870..4965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 4871..4965 -
1622815406.424438-CDS-L-elsbetiae_contig12068:5623..57461622815406.424438-CDS-L-elsbetiae_contig12068:5623..5746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 5624..5746 -
1691682883.5219731-CDS-L-elsbetiae_contig12068:5623..57461691682883.5219731-CDS-L-elsbetiae_contig12068:5623..5746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12068 5624..5746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12068.1737.1prot_L-elsbetiae_contig12068.1737.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12068 3381..5746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12068.1737.1

>prot_L-elsbetiae_contig12068.1737.1 ID=prot_L-elsbetiae_contig12068.1737.1|Name=mRNA_L-elsbetiae_contig12068.1737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
MAATDVVTAAALQLMSMAEKGKDEGVLVATVTVPVNATDGEVATEAFSVS
NQTVQMFSEGIFASDQPDPTADRVTTTAVVKEGGKETKTPETLGLICNVA
IVQHKGKLQTRFPSSNRASRAAPSLSDLKETLFGAIEPTKKNKKKLKQPS
FLNRLSDFQLLVFLSRQMGFSRDFEELCAVVGKGDGKSPALDKLKVVLEN
LCA*
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mRNA from alignment at L-elsbetiae_contig12068:2765..5761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12068.1737.1 ID=mRNA_L-elsbetiae_contig12068.1737.1|Name=mRNA_L-elsbetiae_contig12068.1737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2997bp|location=Sequence derived from alignment at L-elsbetiae_contig12068:2765..5761- (Laminarionema elsbetiae ELsaHSoW15)
AAGAGAGAGCACTTCATGGCGGCCACGGACGTGGTGACGGCAGCCGCTCT GCAGCTCATGTCGATGGCGGAGAAGGGCAAGGACGAAGGTGTGCTCGTGG CGACGGTGACGGTGCCGGTCAACGCCACGGACGGAGAGGTGAGGAGAGAC GACGAAGACAAAAGATGTGGGGGGAGGTTCTTTCTTCAATTTCCTGGTTT TTCTTTTTAAAAAGGATTTTTTTTTGCGGATTTTGTGGAGGAGTACATCT TGGACCGGAAAAGGGGGGGTCAGTAAATATGCCTACAACAGTCCCTCTGG AGCGAGCGACTTTTTCACAGACTGGACGTATGTAGACCGCTGATATTTGT ATCCATTAATTTAAAAGAGAGAGAGCTTGGTGTTGCAACATGCAAATGTA TTTGCAAAAGAAACGGGGCCGCTCGCGGGGTGGGGCATCGGAACAAGAAA AAAACGACGATCGCCCGCCCGCGCGGTGGAAAGACTAAACGGTTGATGCT GGATCTTCTACTATGGTCCGGGGGGCAGATAGTAACACTTTTGTTGGGGC GGTCATCGCCTTTTTCGAACGCATGGAAAGAAAGGCCGACAGGAGCGGTA GGGGCAGCCTCTCTCTTTGCCGTTTTGGGCGAGGTACACCCAATGACAGC CGCAGTTTATAGCGGCGACGGGTGGGAAAAGTGCAAATGTTTAGCTGCTG GTTTGCGTCTGTACTTTTTTTTTCTTTTTTTCGCAAACCCGGCACTGCAG TGCCCTCTCTCCACTTACACTAAAGCGTTCAAAATGAAAATCATAGGTGG CGACCGAGGCGTTCAGCGTCAGCAATCAGACGGTCCAGATGTTCAGCGAG GGGATATTCGCCAGCGACCAGCCAGACCCAACGGCGGACAGGTGAAATGG AACAGAAGCACGAAACGAAAAGAAGACACGTTCCTTAAGGAAGACATTGA ACAATGTCGTACAGACGCGACGTACCGCCGTCGTCTCTGTGTGTGTCAGC GTTGGGCATGTTGGCGTCACTGACTTACTTCGCAGAAAGGTTGATATTCA GCTTGATGTGTCGAGTCCTCTCGCCGCCAAGCTTGCGGGGGGCGACGTGT GGGTGTATGTGGTCTTAGCATATGTATGCGCATAACCGACTGACCAATAA AAAGTGTGTTTGTGTGTGTGTGTTTGCCTTGGTTTTTAGCCTCGATGTGC GAACCACCAGGTGGCGGCGGCGGTGGTCTATTGGCTGGCGGATGTGCGAA CAACTAAATCGAATCGTGACAAAGCAGCGAGAGTGACATCGTGTCTACTG ACGATTATGGCGACCCTCCCCCTACCTCCCCCCCCCTGAGCGTTCCGCCT GTATGTGAATCTGCTGTGCTCCCCCCCCCCCCCCTGGCTTGGTGTAAGGG TGACAACTACGGCGGTGGTCAAGGAAGGCGGCAAGGAGACAAAAACGCCG GAAACGCTGGGGCTGATTTGTAACGTGGCCATAGTCCAGCACAAGGGGAA GCTGCAGACGAGGTGGGGGTTGGTATTTCTCGACCTGTCGGTATGTATGT AGCACCCTGCGTTTTTTTGTTGTTTTTTGCTCCGTTGTTGTTTTGCGTGT GAGTGATACCACTGCTGTCATTGTTTGGGGGCGTGAAACATCCTTTACCT ACTCGTCGCTCCAAGCACCACATTCCTGACGTTGCAACTCGAGTGTATTT CTCTGCATATGTTTGGTTGATCTCATCTCCTTCTCTCTTCCTCTTTTTGT GCTGTGTACCTCCGCTTTTCACGAGGTATGAATGCAAGTAACCCTTCCCC GCCCTGCCCCTTTCATCCTCGCCGCCGCCGCCAAACACGCAGGTTTCCGT CCTCGAACCGAGCATCGAGAGCGGCACCATCCTTGTCGGACTTGAAGGAA ACCCTCTTCGGCGCGATCGAGCCCACCAAGAAGAACAAGAAGAAGCTAAA GCAGCCCTCGTTCTTAAACCGCCTGTCGGATTTCCAGCTCCTGGTATTCT TGTCTCGCCAGGTGAGCAACGGAAGAGCACCGTAAATGCGTAAATACCCC CCCCGATAATGCGAGCTACGATGTGCTCGATTGTGCCCCCCCCCTGCACC CGATTGAGGGGCACATTAGGGGAGGGAGCGGATGGATGCTCTCGAAGGTG GTGTTGGGCAGGCGTTGCACCCCGGCCTCTCGACTGTTTCATGCTGCTGA TATGTCTATTTATATATGTATGTACGTTCGTGCCATTTACCCTCCGCACG CGCAACGCTACTACATACAGATGGGGTTCTCGAGAGATTTCGAAGAGCTG TGCGCCGTGGTGGGGAAGGGCGACGGCAAGAGCCCCGCCCTCGACAAGCT GAAGGTCGTCTTGGAAAACCTTTGCGCTTGACTTCTAGCTGGAGAGCCCC GTTCTGTATAGAAGATTCCCACACTGCTGGCGTATGCTTTTCACGCATCG AGCCCTCCTGCGCTCTTTCGTAGGTGACCATTTCGATGCATCGTCCGCGC TGATTTTTCGATACGATTTCGGCCGCGGGTCTACTTCCAAACTCTAGGTT TTCCGGTTTTCCCTCGCAGAGACGGTTTTTGCTGCGTGTCTCCCTCCACT CAAACCGGGGCGTTGCTATGGTAAGACATGAAGAGTTGCGAGAGGAAGAA GAGGACGAAAGAGGCCTCTTTTGGTACGCTATTTGTTCGTGTTTGGCTTG GTGCTACATAGTATCTTCTGTGCGGAGACCGTGTTCAGGAATGCTCTATG CTGTCTATAATTGCCTGATGTTTATTACGAGCCAGTGACAACGAGCGAGG TAGGTAGAGAGCACGACGGAGAGATTCAGTGCACTGCGGATGTGGTTTTG TGTACTCGCCGTGTTTTTCGGGCAGCTCAGGTGTTGTATGTAGGAGCATT GTGCCATGTTTTCAGTTCTTGTAGGCTATGTAGCTGCTCTGTCGTTAAAA ACCAGAAAGGCGCCAGCTATTCCGAGAAATTAGTCCGAACAACTTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12068:2765..5761-

>mRNA_L-elsbetiae_contig12068.1737.1 ID=mRNA_L-elsbetiae_contig12068.1737.1|Name=mRNA_L-elsbetiae_contig12068.1737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig12068:2765..5761- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCCACGGACGTGGTGACGGCAGCCGCTCTGCAGCTCATGTCGAT
GGCGGAGAAGGGCAAGGACGAAGGTGTGCTCGTGGCGACGGTGACGGTGC
CGGTCAACGCCACGGACGGAGAGATGGCGGCCACGGACGTGGTGACGGCA
GCCGCTCTGCAGCTCATGTCGATGGCGGAGAAGGGCAAGGACGAAGGTGT
GCTCGTGGCGACGGTGACGGTGCCGGTCAACGCCACGGACGGAGAGGTGG
CGACCGAGGCGTTCAGCGTCAGCAATCAGACGGTCCAGATGTTCAGCGAG
GGGATATTCGCCAGCGACCAGCCAGACCCAACGGCGGACAGGTGGCGACC
GAGGCGTTCAGCGTCAGCAATCAGACGGTCCAGATGTTCAGCGAGGGGAT
ATTCGCCAGCGACCAGCCAGACCCAACGGCGGACAGGGTGACAACTACGG
CGGTGGTCAAGGAAGGCGGCAAGGAGACAAAAACGCCGGAAACGCTGGGG
CTGATTTGTAACGTGGCCATAGTCCAGCACAAGGGGAAGCTGCAGACGAG
GGTGACAACTACGGCGGTGGTCAAGGAAGGCGGCAAGGAGACAAAAACGC
CGGAAACGCTGGGGCTGATTTGTAACGTGGCCATAGTCCAGCACAAGGGG
AAGCTGCAGACGAGGTTTCCGTCCTCGAACCGAGCATCGAGAGCGGCACC
ATCCTTGTCGGACTTGAAGGAAACCCTCTTCGGCGCGATCGAGCCCACCA
AGAAGAACAAGAAGAAGCTAAAGCAGCCCTCGTTCTTAAACCGCCTGTCG
GATTTCCAGCTCCTGGTATTCTTGTCTCGCCAGGTTTCCGTCCTCGAACC
GAGCATCGAGAGCGGCACCATCCTTGTCGGACTTGAAGGAAACCCTCTTC
GGCGCGATCGAGCCCACCAAGAAGAACAAGAAGAAGCTAAAGCAGCCCTC
GTTCTTAAACCGCCTGTCGGATTTCCAGCTCCTGGTATTCTTGTCTCGCC
AGATGGGGTTCTCGAGAGATTTCGAAGAGCTGTGCGCCGTGGTGGGGAAG
GGCGACGGCAAGAGCCCCGCCCTCGACAAGCTGAAGGTCGTCTTGGAAAA
CCTTTGCGCTTGAATGGGGTTCTCGAGAGATTTCGAAGAGCTGTGCGCCG
TGGTGGGGAAGGGCGACGGCAAGAGCCCCGCCCTCGACAAGCTGAAGGTC
GTCTTGGAAAACCTTTGCGCTTGA
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