mRNA_L-elsbetiae_contig12063.1734.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12063.1734.1
Unique NamemRNA_L-elsbetiae_contig12063.1734.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12063.1734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12063contigL-elsbetiae_contig12063:124..1805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.8261898-CDS-L-elsbetiae_contig12063:125..2741622815404.8261898-CDS-L-elsbetiae_contig12063:125..274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12063 126..274 -
1691682883.4101253-CDS-L-elsbetiae_contig12063:125..2741691682883.4101253-CDS-L-elsbetiae_contig12063:125..274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12063 126..274 -
1622815404.8368611-CDS-L-elsbetiae_contig12063:1693..18051622815404.8368611-CDS-L-elsbetiae_contig12063:1693..1805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12063 1694..1805 -
1691682883.418887-CDS-L-elsbetiae_contig12063:1693..18051691682883.418887-CDS-L-elsbetiae_contig12063:1693..1805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12063 1694..1805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12063.1734.1prot_L-elsbetiae_contig12063.1734.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12063 126..1805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12063.1734.1

>prot_L-elsbetiae_contig12063.1734.1 ID=prot_L-elsbetiae_contig12063.1734.1|Name=mRNA_L-elsbetiae_contig12063.1734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
IILPGSDENRREGAVAVTYPLRRLQIDGRPPREVDRLACRAEQRRTGGGR
AESRRGPRTAIRSGATGAGTGRRGGRRRTCRGQPALK
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mRNA from alignment at L-elsbetiae_contig12063:124..1805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12063.1734.1 ID=mRNA_L-elsbetiae_contig12063.1734.1|Name=mRNA_L-elsbetiae_contig12063.1734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1682bp|location=Sequence derived from alignment at L-elsbetiae_contig12063:124..1805- (Laminarionema elsbetiae ELsaHSoW15)
ATTATTCTGCCGGGCAGCGACGAGAACCGAAGAGAAGGAGCAGTGGCGGT
AACTTACCCCCTTCGGCGACTGCAGATCGATGGGCGTCCTCCACGCGAAG
TCGATCGGTTAGGTGCGTGTTGGTGTGTGTGTGTGTGTGTGCCTAGGTGC
CCGGGGGGGGGTGGGAGAGCGACAGGGAGAGAGAAAGGGAGAGAGGGAAA
GAGATAGAGATAAGAGAGGGAGGGGGGGGCAGAAAGAGAGGTAGGGAGAG
AGAGAGCGAGAGAGAGAGATAACGTTGTTATTCGTCACTATTCGTCACGC
GATTGGCTTGCAGAGCATCGTCTGCGTACCCCCTGGGCTCCACACACACA
CCCGCACCCCAAAAGAAGAGGCAACCCTGTGTTTGTTTTCCTTTTTGGTG
CTCCTCGATTGAGTATTAACCCTGATCCGCCCCCACCGTACGCTTTGTTG
GGGGGATACGTTGCCCGGAGTCGCTTTGCGAAAGGGAGTTGGTTTGTTGT
TGGTTTGTTGTTGGTTTGTTGGTGGTGTGAAGCGCCGAAGAAGACATACG
TAGGTTAGCTTGTTTGTGTTTCCGTTCTGTGTCTCCTCAACACATGTACC
ACATCCATGCAACGTGAGTCGAGCCGGGCGCGCCCGCTTCTCCCTTTGAA
CCCCCCCCCCCCCCCCCCCCGCGGCCGCGGGGGCGGGCGGCTTTCCACCT
CTGAGCCGCGCCGCCCCCCACCGCGCCGGCCACTGCNNNNNNAACGCCCC
CCCCCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCCCCCAGGGGCCCCGGG
GCCTGCAATCCCCCCCCCTTCTGCCCCCCCCCCCCCCGGTCCCACGTTTT
TTTTGCCTTGTCCAGTTGGTATAACATATAGGAAATAGTATAGGGGGGAT
CCGATTGGGGGACTCACGCCCCCTTAAGAATCTAGGCTGCCGTCCCCCCC
CTAAGTATACCCCCCCCTCCGATTTCGGCTCAAGTCAGTTTGGTGGCATA
AGTGTGAGGTATTGCAGCCCGCATGCCCCCTTGCTCCCTCCTTTCCTCCG
TAGGCTGAAAATATCCACGGAGCCCCTCTTTCGCTCAGTTTCGGCGCTTG
CCCTCGTTTCAGTGTAAACTACATACCTTGTAGGAGTATATATTCAACTA
AGTGCTTGTTTGATGTGTGTTACGGGTACCGACTCATTTACCAATGCTCG
GACAACAAATTCAGGGACGGCGCACCGCCCGCAGTCGGTCGCCCGCGTAG
TAAACGCAAAGGGGTATATCATTTCGGTCTACCAGTGCTTTGTAGTATAA
AAACTGGCTGCGCTCCTCGGTCGTGTCCCTCGTGTTGTGCATACTGGTTA
GTCCCTTGTCCCTTTTTTTGTTGTTGCTGTGTCCCCCTCCGTGTCTCGGC
TGCCACCGTTTTTTTGTGTGTCCTCCCTCTCCCTCTCTGGCGACTGACCT
GTCTTTACGCTGCCGATGAACGGAACGCCGCCGATACTGTCCCAAACACC
CAACAACGACGACGGCGACGGCAACAAGCAGCGTGCCGCGCGGAACAGCG
GCGGACCGGGGGGGGGCGCGCGGAATCGAGGCGAGGTCCCCGGACGGCGA
TCCGTTCGGGAGCAACAGGGGCAGGCACGGGGCGCCGCGGCGGTCGTCGT
CGAACTTGTCGAGGCCAACCAGCTTTAAAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12063:124..1805-

>mRNA_L-elsbetiae_contig12063.1734.1 ID=mRNA_L-elsbetiae_contig12063.1734.1|Name=mRNA_L-elsbetiae_contig12063.1734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig12063:124..1805- (Laminarionema elsbetiae ELsaHSoW15)
ATTATTCTGCCGGGCAGCGACGAGAACCGAAGAGAAGGAGCAGTGGCGGT
AACTTACCCCCTTCGGCGACTGCAGATCGATGGGCGTCCTCCACGCGAAG
TCGATCGGTTAGATTATTCTGCCGGGCAGCGACGAGAACCGAAGAGAAGG
AGCAGTGGCGGTAACTTACCCCCTTCGGCGACTGCAGATCGATGGGCGTC
CTCCACGCGAAGTCGATCGGTTAGCGTGCCGCGCGGAACAGCGGCGGACC
GGGGGGGGGCGCGCGGAATCGAGGCGAGGTCCCCGGACGGCGATCCGTTC
GGGAGCAACAGGGGCAGGCACGGGGCGCCGCGGCGGTCGTCGTCGAACTT
GTCGAGGCCAACCAGCTTTAAAGCGTGCCGCGCGGAACAGCGGCGGACCG
GGGGGGGGCGCGCGGAATCGAGGCGAGGTCCCCGGACGGCGATCCGTTCG
GGAGCAACAGGGGCAGGCACGGGGCGCCGCGGCGGTCGTCGTCGAACTTG
TCGAGGCCAACCAGCTTTAAAG
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