mRNA_L-elsbetiae_contig12059.1732.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12059.1732.1
Unique NamemRNA_L-elsbetiae_contig12059.1732.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: D7FME5_ECTSI (5'-3' exoribonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME5_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.840e-28
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1
Query:   34 AQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210
            AQLSERDIILGIFHYIDRIVTHIVRPR+VLYMAIDGVAPRAKMNQQRSRRFRARKDMQE
Sbjct:   54 AQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 112          
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.550e-24
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKD 201
            C  P    S   QLSERD+ LG+FHYIDRIVTHIVRPR+VLYMAIDGVAPRAKMNQQRSRRFR+ KD
Sbjct:   44 CTHPND-DSLSKQLSERDVFLGVFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSAKD 109          
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S2UCD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.770e-20
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210
            C  P      D  LSERD++LGI HY+DRIVT IV+P+  +YMAIDGVAPRAK+NQQRSRRFR+ KD+ E
Sbjct:   44 CTHPNHLDVSDV-LSERDMMLGIMHYLDRIVTQIVKPQVSVYMAIDGVAPRAKLNQQRSRRFRSAKDLAE 112          
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S4DF97_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF97_HETAK)

HSP 1 Score: 85.9 bits (211), Expect = 4.340e-20
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1
Query:   34 AQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210
            + LS+RDI+L IF YIDRIVT IVRP+K+L++A+DG APRAK+NQQRSRRFR+ KD +E
Sbjct:   52 SHLSDRDIMLSIFSYIDRIVTQIVRPKKILFLAVDGCAPRAKLNQQRSRRFRSAKDARE 110          
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A448ZS96_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS96_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.560e-19
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210
            C  P      D  +SERD++LGI HY+DRI+T IV+PR  +YMAIDGVAPRAK+NQQRSRRFR+ KDM E
Sbjct:   44 CTHPSHMDISDV-ISERDMMLGIMHYLDRIITQIVKPRVSVYMAIDGVAPRAKLNQQRSRRFRSAKDMAE 112          
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S4EG33_9STRA (5'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG33_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.560e-19
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210
            C  P      D  +SERD++LGI HY+DRI+T IV+PR  +YMAIDGVAPRAK+NQQRSRRFR+ KDM E
Sbjct:   44 CTHPSHMDISDV-ISERDMMLGIMHYLDRIITQIVKPRVSVYMAIDGVAPRAKLNQQRSRRFRSAKDMAE 112          
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A0D2JDS0_9CHLO (5'-3' exoribonuclease 2 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JDS0_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-18
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210
            C  PE RP   A  +ER++ L IF YIDR+   +VRPRKVLYMAIDGVAPRAKMNQQRSRRFRA ++M+E
Sbjct:   62 CFHPEDRP---APTTEREVFLNIFDYIDRLFA-MVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAQEMEE 127          
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A2V0PGL9_9CHLO (Exoribonuclease n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PGL9_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 1.700e-18
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210
            C  PE RP   A  +ER++ L IF YIDR+  ++VRPRKVLYMAIDGVAPRAKMNQQRSRRFRA ++M+E
Sbjct:   62 CFHPEDRP---APTTEREVFLNIFDYIDRLF-NMVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAQEMEE 127          
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S2STQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.130e-18
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1
Query:   34 AQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210
            A LSERD++L +F YIDRIV+ IV+P+K LY+A+DGVAPRAK+NQQRSRRF + KD QE
Sbjct:   39 AALSERDVMLSMFTYIDRIVSQIVKPKKFLYIAVDGVAPRAKLNQQRSRRFASAKDAQE 97          
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.140e-18
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210
            C  P      D  LSERD++LGI HY+DRI+T IV+P+  ++MAIDGVAPRAK+NQQRSRRFR+ KD+ E
Sbjct:   44 CTHPNHLDVSDV-LSERDMVLGIMHYLDRIITQIVKPKVSVFMAIDGVAPRAKLNQQRSRRFRSAKDLAE 112          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME5_ECTSI3.840e-2898.315'-3' exoribonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4G8_9STRA6.550e-2477.61XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S2UCD1_9STRA1.770e-2064.29Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4DF97_HETAK4.340e-2069.49Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A448ZS96_9STRA3.560e-1964.295'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EG33_9STRA3.560e-1964.295'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia a... [more]
A0A0D2JDS0_9CHLO1.240e-1867.145'-3' exoribonuclease 2 n=1 Tax=Monoraphidium negl... [more]
A0A2V0PGL9_9CHLO1.700e-1867.14Exoribonuclease n=1 Tax=Raphidocelis subcapitata T... [more]
A0A7S2STQ8_9STRA2.130e-1869.49Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2PSP2_9STRA3.140e-1861.43Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12059contigL-elsbetiae_contig12059:4456..4665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D7FME5
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.648275-CDS-L-elsbetiae_contig12059:4455..46651622815404.648275-CDS-L-elsbetiae_contig12059:4455..4665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12059 4456..4665 -
1691682883.2807708-CDS-L-elsbetiae_contig12059:4455..46651691682883.2807708-CDS-L-elsbetiae_contig12059:4455..4665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12059 4456..4665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12059.1732.1prot_L-elsbetiae_contig12059.1732.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12059 4456..4665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12059.1732.1

>prot_L-elsbetiae_contig12059.1732.1 ID=prot_L-elsbetiae_contig12059.1732.1|Name=mRNA_L-elsbetiae_contig12059.1732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAP
RAKMNQQRSRRFRARKDMQE
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mRNA from alignment at L-elsbetiae_contig12059:4456..4665-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12059.1732.1 ID=mRNA_L-elsbetiae_contig12059.1732.1|Name=mRNA_L-elsbetiae_contig12059.1732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig12059:4456..4665- (Laminarionema elsbetiae ELsaHSoW15)
TGCGTCACCCCCGAACAACGACCCTCTCGCGACGCGCAGCTGAGCGAGCG CGACATCATCCTGGGCATCTTCCACTACATCGACCGCATCGTGACGCACA TCGTGCGCCCACGAAAGGTGCTGTACATGGCCATCGACGGCGTTGCCCCC CGGGCAAAGATGAACCAGCAGCGGTCCCGCCGCTTCCGCGCCCGCAAGGA CATGCAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12059:4456..4665-

>mRNA_L-elsbetiae_contig12059.1732.1 ID=mRNA_L-elsbetiae_contig12059.1732.1|Name=mRNA_L-elsbetiae_contig12059.1732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig12059:4456..4665- (Laminarionema elsbetiae ELsaHSoW15)
TGCGTCACCCCCGAACAACGACCCTCTCGCGACGCGCAGCTGAGCGAGCG
CGACATCATCCTGGGCATCTTCCACTACATCGACCGCATCGTGACGCACA
TCGTGCGCCCACGAAAGGTGCTGTACATGGCCATCGACGGCGTTGCCCCC
CGGGCAAAGATGAACCAGCAGCGGTCCCGCCGCTTCCGCGCCCGCAAGGA
CATGCAGGAGTGCGTCACCCCCGAACAACGACCCTCTCGCGACGCGCAGC
TGAGCGAGCGCGACATCATCCTGGGCATCTTCCACTACATCGACCGCATC
GTGACGCACATCGTGCGCCCACGAAAGGTGCTGTACATGGCCATCGACGG
CGTTGCCCCCCGGGCAAAGATGAACCAGCAGCGGTCCCGCCGCTTCCGCG
CCCGCAAGGACATGCAGGAG
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