mRNA_L-elsbetiae_contig12059.1732.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: D7FME5_ECTSI (5'-3' exoribonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME5_ECTSI) HSP 1 Score: 114 bits (284), Expect = 3.840e-28 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 Query: 34 AQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210 AQLSERDIILGIFHYIDRIVTHIVRPR+VLYMAIDGVAPRAKMNQQRSRRFRARKDMQE Sbjct: 54 AQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 112
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA) HSP 1 Score: 102 bits (255), Expect = 6.550e-24 Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 1 Query: 1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKD 201 C P S QLSERD+ LG+FHYIDRIVTHIVRPR+VLYMAIDGVAPRAKMNQQRSRRFR+ KD Sbjct: 44 CTHPND-DSLSKQLSERDVFLGVFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSAKD 109
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S2UCD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD1_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.770e-20 Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1 Query: 1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210 C P D LSERD++LGI HY+DRIVT IV+P+ +YMAIDGVAPRAK+NQQRSRRFR+ KD+ E Sbjct: 44 CTHPNHLDVSDV-LSERDMMLGIMHYLDRIVTQIVKPQVSVYMAIDGVAPRAKLNQQRSRRFRSAKDLAE 112
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S4DF97_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF97_HETAK) HSP 1 Score: 85.9 bits (211), Expect = 4.340e-20 Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1 Query: 34 AQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210 + LS+RDI+L IF YIDRIVT IVRP+K+L++A+DG APRAK+NQQRSRRFR+ KD +E Sbjct: 52 SHLSDRDIMLSIFSYIDRIVTQIVRPKKILFLAVDGCAPRAKLNQQRSRRFRSAKDARE 110
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A448ZS96_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS96_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.560e-19 Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1 Query: 1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210 C P D +SERD++LGI HY+DRI+T IV+PR +YMAIDGVAPRAK+NQQRSRRFR+ KDM E Sbjct: 44 CTHPSHMDISDV-ISERDMMLGIMHYLDRIITQIVKPRVSVYMAIDGVAPRAKLNQQRSRRFRSAKDMAE 112
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S4EG33_9STRA (5'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG33_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.560e-19 Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1 Query: 1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210 C P D +SERD++LGI HY+DRI+T IV+PR +YMAIDGVAPRAK+NQQRSRRFR+ KDM E Sbjct: 44 CTHPSHMDISDV-ISERDMMLGIMHYLDRIITQIVKPRVSVYMAIDGVAPRAKLNQQRSRRFRSAKDMAE 112
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A0D2JDS0_9CHLO (5'-3' exoribonuclease 2 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JDS0_9CHLO) HSP 1 Score: 87.0 bits (214), Expect = 1.240e-18 Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1 Query: 1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210 C PE RP A +ER++ L IF YIDR+ +VRPRKVLYMAIDGVAPRAKMNQQRSRRFRA ++M+E Sbjct: 62 CFHPEDRP---APTTEREVFLNIFDYIDRLFA-MVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAQEMEE 127
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A2V0PGL9_9CHLO (Exoribonuclease n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PGL9_9CHLO) HSP 1 Score: 87.4 bits (215), Expect = 1.700e-18 Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 1 Query: 1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210 C PE RP A +ER++ L IF YIDR+ ++VRPRKVLYMAIDGVAPRAKMNQQRSRRFRA ++M+E Sbjct: 62 CFHPEDRP---APTTEREVFLNIFDYIDRLF-NMVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAQEMEE 127
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S2STQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ8_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 2.130e-18 Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 Query: 34 AQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210 A LSERD++L +F YIDRIV+ IV+P+K LY+A+DGVAPRAK+NQQRSRRF + KD QE Sbjct: 39 AALSERDVMLSMFTYIDRIVSQIVKPKKFLYIAVDGVAPRAKLNQQRSRRFASAKDAQE 97
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.140e-18 Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1 Query: 1 CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRARKDMQE 210 C P D LSERD++LGI HY+DRI+T IV+P+ ++MAIDGVAPRAK+NQQRSRRFR+ KD+ E Sbjct: 44 CTHPNHLDVSDV-LSERDMVLGIMHYLDRIITQIVKPKVSVFMAIDGVAPRAKLNQQRSRRFRSAKDLAE 112 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12059.1732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12059.1732.1 >prot_L-elsbetiae_contig12059.1732.1 ID=prot_L-elsbetiae_contig12059.1732.1|Name=mRNA_L-elsbetiae_contig12059.1732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp CVTPEQRPSRDAQLSERDIILGIFHYIDRIVTHIVRPRKVLYMAIDGVAPback to top mRNA from alignment at L-elsbetiae_contig12059:4456..4665- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12059.1732.1 ID=mRNA_L-elsbetiae_contig12059.1732.1|Name=mRNA_L-elsbetiae_contig12059.1732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig12059:4456..4665- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12059:4456..4665- >mRNA_L-elsbetiae_contig12059.1732.1 ID=mRNA_L-elsbetiae_contig12059.1732.1|Name=mRNA_L-elsbetiae_contig12059.1732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig12059:4456..4665- (Laminarionema elsbetiae ELsaHSoW15)back to top |