mRNA_L-elsbetiae_contig12006.1708.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12006.1708.1
Unique NamemRNA_L-elsbetiae_contig12006.1708.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12006.1708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12006contigL-elsbetiae_contig12006:1808..2786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815402.6260772-CDS-L-elsbetiae_contig12006:1807..20581622815402.6260772-CDS-L-elsbetiae_contig12006:1807..2058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12006 1808..2058 -
1691682881.990359-CDS-L-elsbetiae_contig12006:1807..20581691682881.990359-CDS-L-elsbetiae_contig12006:1807..2058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12006 1808..2058 -
1622815402.6368334-CDS-L-elsbetiae_contig12006:2599..27861622815402.6368334-CDS-L-elsbetiae_contig12006:2599..2786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12006 2600..2786 -
1691682881.9999266-CDS-L-elsbetiae_contig12006:2599..27861691682881.9999266-CDS-L-elsbetiae_contig12006:2599..2786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12006 2600..2786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12006.1708.1prot_L-elsbetiae_contig12006.1708.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12006 1808..2786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12006.1708.1

>prot_L-elsbetiae_contig12006.1708.1 ID=prot_L-elsbetiae_contig12006.1708.1|Name=mRNA_L-elsbetiae_contig12006.1708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
VERGPTGASEAATATTRAARTAAAAAWRCRRGRIGDAPPLHRRAAAHGRR
AGSSVALKAQDRAGRPCAIAPRAAATAATLAVRAAAAPRCPVHPPLPQRH
ARGGAALPLPRREGAHLQHPLRSYRAAAKAAASAAAEAAGSSGRPP
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mRNA from alignment at L-elsbetiae_contig12006:1808..2786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12006.1708.1 ID=mRNA_L-elsbetiae_contig12006.1708.1|Name=mRNA_L-elsbetiae_contig12006.1708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=979bp|location=Sequence derived from alignment at L-elsbetiae_contig12006:1808..2786- (Laminarionema elsbetiae ELsaHSoW15)
GTTGAGCGCGGCCCAACGGGAGCATCTGAGGCAGCTACAGCAACAACGCG
AGCGGCACGCACAGCAGCAGCAGCAGCATGGAGGTGCAGGCGGGGGAGGA
TCGGTGATGCCCCACCACTGCATCGGCGTGCAGCAGCGCATGGCCGGCGA
GCTGGCTCTTCCGTCGCCCTCAAGGCACAGGATCGAGGTGCGTTGATCAC
CGTGACAAATGCGGCGGAACCTTCCGGCTGTTGCCCCGCAGCGTTTCTGA
CGTAGTATTTGTAAATCACGAACATACATGATTATTCCACGGCGGTCCGC
TCCCTCCCTCTTGCGTTCGACACCTGTCCTAGGTGGATGAGGTTTTGCTT
ATCATTAAGTAAAAGAAGACAGCATATTCATGGTGTACTTAATTCCTCAA
GAAGGACCGCTCTGCTCAGAAACCAGCACAACAAAGGCGGTGCACTCGTC
AGTGGTGTTGGTGCGTGTTCTGTATTCATCAACAGAGGCGATTCTGCTTC
CCTTTCGCTATTTGTGACGACGGGCGTTGTGTTGTTATGCCTTCTTTATC
GCTGCTTTGTAGGCGAGCTTTGCACGTTGTGTATTGTAGTACCGCACTGC
ACTGCAATACTGTTAAGTTTCGTTTTCAGCCGAGCTTGTTAGCCTCCAGT
CTCTATGCTTGTTCGCGCCTGACGCCTATGTTTTGTTTGTCCACTGCCGT
GTTTATATAATTTCCTGGCTCTTTTCAGCTGGCCGACCCTGCGCCATCGC
CCCGCGGGCCGCCGCGACAGCAGCGACACTGGCAGTCCGGGCAGCCGCAG
CACCCCGGTGCCCTGTCCATCCCCCGCTTCCCCAACGCCATGCCCGCGGG
GGCGCCGCACTGCCCCTCCCCCGTCGTGAAGGTGCCCATCTACAGCACCC
TCTCCGAAGCTATCGAGCAGCAGCAAAAGCAGCAGCATCAGCAGCAGCAG
AGGCAGCAGGTTCATCAGGCCGGCCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12006:1808..2786-

>mRNA_L-elsbetiae_contig12006.1708.1 ID=mRNA_L-elsbetiae_contig12006.1708.1|Name=mRNA_L-elsbetiae_contig12006.1708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig12006:1808..2786- (Laminarionema elsbetiae ELsaHSoW15)
GTTGAGCGCGGCCCAACGGGAGCATCTGAGGCAGCTACAGCAACAACGCG
AGCGGCACGCACAGCAGCAGCAGCAGCATGGAGGTGCAGGCGGGGGAGGA
TCGGTGATGCCCCACCACTGCATCGGCGTGCAGCAGCGCATGGCCGGCGA
GCTGGCTCTTCCGTCGCCCTCAAGGCACAGGATCGAGGTTGAGCGCGGCC
CAACGGGAGCATCTGAGGCAGCTACAGCAACAACGCGAGCGGCACGCACA
GCAGCAGCAGCAGCATGGAGGTGCAGGCGGGGGAGGATCGGTGATGCCCC
ACCACTGCATCGGCGTGCAGCAGCGCATGGCCGGCGAGCTGGCTCTTCCG
TCGCCCTCAAGGCACAGGATCGAGCTGGCCGACCCTGCGCCATCGCCCCG
CGGGCCGCCGCGACAGCAGCGACACTGGCAGTCCGGGCAGCCGCAGCACC
CCGGTGCCCTGTCCATCCCCCGCTTCCCCAACGCCATGCCCGCGGGGGCG
CCGCACTGCCCCTCCCCCGTCGTGAAGGTGCCCATCTACAGCACCCTCTC
CGAAGCTATCGAGCAGCAGCAAAAGCAGCAGCATCAGCAGCAGCAGAGGC
AGCAGGTTCATCAGGCCGGCCCCCCCTGGCCGACCCTGCGCCATCGCCCC
GCGGGCCGCCGCGACAGCAGCGACACTGGCAGTCCGGGCAGCCGCAGCAC
CCCGGTGCCCTGTCCATCCCCCGCTTCCCCAACGCCATGCCCGCGGGGGC
GCCGCACTGCCCCTCCCCCGTCGTGAAGGTGCCCATCTACAGCACCCTCT
CCGAAGCTATCGAGCAGCAGCAAAAGCAGCAGCATCAGCAGCAGCAGAGG
CAGCAGGTTCATCAGGCCGGCCCCCC
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