mRNA_L-elsbetiae_contig12001.1706.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12001.1706.1
Unique NamemRNA_L-elsbetiae_contig12001.1706.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.190e-23
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVDGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSF 147
            VVTNDLYRDHVKG++GRKKADAARRWIK HSISYTFV DEFFPNPDFSF
Sbjct: 1539 VVTNDLYRDHVKGIEGRKKADAARRWIKAHSISYTFVGDEFFPNPDFSF 1587
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: A0A835YPQ7_9STRA (Zc3h12a-like ribonuclease NYN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.410e-16
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVDGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSF 147
            VVTND YRDH   + G KK +AARRW+K H+ISYTFV DEF PNPDF F
Sbjct: 1178 VVTNDQYRDHYAALQGAKKREAARRWVKGHTISYTFVGDEFMPNPDFQF 1226
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: A0A485LSN2_9STRA (Aste57867_25204 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSN2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.390e-14
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVDGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSFLPSQ 159
            +VTNDL+RDH++ + G K+  A R W+K H IS+T+V DEFFPNPDF F P Q
Sbjct:  910 LVTNDLFRDHLENIKGGKQKGAMREWLKNHRISFTWVGDEFFPNPDFRFPPKQ 962
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: A0A6G0XRT9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRT9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.890e-13
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVDGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSFLPSQ 159
            +VTND++RDHV+ +    + +A R W+K+H IS+T+V DEFFPNPDF F P +
Sbjct:  862 LVTNDMFRDHVENIKSNAQRNAMRDWLKSHRISFTWVGDEFFPNPDFRFPPKR 914
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: A0A1V9YL36_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YL36_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.500e-12
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVDGRKKADAA-RRWIKTHSISYTFVVDEFFPNPDFSF-LPSQDQ 165
            VVTNDL+RDHV G+ G     AA R+W+ +H IS+T+V DE+FPNPDF F  P++DQ
Sbjct:  843 VVTNDLFRDHVDGMTGTGAQKAAMRQWLNSHRISFTWVGDEYFPNPDFRFPKPAEDQ 899
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: A0A1V9YYR1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYR1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.510e-12
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVD--GRKKADAARRWIKTHSISYTFVVDEFFPNPDFSF 147
            VVTNDL+RDHV+G++  G+KKA A R+W+  H IS+T+V DEFFPNPDF F
Sbjct: 1140 VVTNDLFRDHVEGMNASGQKKA-AMRQWLAAHRISFTWVGDEFFPNPDFRF 1189
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: A0A7S2CKB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CKB1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.350e-12
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVDGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSF 147
            VVTND+YRDHV  +   ++     +W+++H ISYTFV DEF PNPDF F
Sbjct:  151 VVTNDMYRDHVGKITNHRERKECLQWMRSHLISYTFVGDEFLPNPDFKF 199
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: A0A3R6VGX7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VGX7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.810e-12
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVDGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSFL 150
            VVTNDL+RDH+  +   +K  A R W+K H IS+T+V DEF PNPDF ++
Sbjct: 1082 VVTNDLFRDHLDNIKPSQKRSAMREWLKAHRISFTWVGDEFLPNPDFRYM 1131
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: A0A7S2D3B2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3B2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.020e-11
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVDGRKKADAARRWIKTHSISYTFVVDEFFPNPD 138
            VVTND+YRDHVKG   R+  +  + W  TH +SYT+V DEF PNP+
Sbjct:   84 VVTNDMYRDHVKGQATREDREREKEWTNTHLVSYTWVQDEFLPNPE 129
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BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Match: T0QIU5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QIU5_SAPDV)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-11
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGVDGRKKADAA-RRWIKTHSISYTFVVDEFFPNPDFSF 147
            VVTNDL+RDHV G+ G  +  AA R+W+  H IS+T+V DEF PNPDF F
Sbjct:  849 VVTNDLFRDHVDGLQGNGQTKAAMRQWLSAHCISFTWVGDEFLPNPDFRF 898
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12001.1706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G542_ECTSI1.190e-2391.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPQ7_9STRA8.410e-1669.39Zc3h12a-like ribonuclease NYN domain-containing pr... [more]
A0A485LSN2_9STRA1.390e-1458.49Aste57867_25204 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XRT9_9STRA5.890e-1352.83Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YL36_9STRA1.500e-1257.89Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9YYR1_9STRA1.510e-1264.71N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S2CKB1_9STRA6.350e-1255.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3R6VGX7_9STRA9.810e-1254.00Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S2D3B2_9STRA1.020e-1156.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
T0QIU5_SAPDV1.340e-1160.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12001contigL-elsbetiae_contig12001:131..295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue5.7e-19
Seed eggNOG ortholog2880.D7G542
Preferred nameEBS1
KEGG koko:K11124,ko:K11132,ko:K18668
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000018,GO:0000019,GO:0000184,GO:0000228,GO:0000723,GO:0000781,GO:0000784,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005697,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010638,GO:0010639,GO:0010833,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032207,GO:0032208,GO:0032210,GO:0032212,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034399,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0042162,GO:0042592,GO:0042886,GO:0043021,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045184,GO:0045910,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046907,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051276,GO:0051641,GO:0051649,GO:0060249,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071919,GO:0072695,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098687,GO:0098847,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1904356,GO:1904358,GO:1905324,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.zinc finger CCCH-type containing
EggNOG OGsKOG2162@1,KOG2162@2759,KOG3777@1,KOG3777@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03032
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815402.502028-CDS-L-elsbetiae_contig12001:130..2951622815402.502028-CDS-L-elsbetiae_contig12001:130..295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12001 131..295 +
1691682881.9350991-CDS-L-elsbetiae_contig12001:130..2951691682881.9350991-CDS-L-elsbetiae_contig12001:130..295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12001 131..295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12001.1706.1prot_L-elsbetiae_contig12001.1706.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12001 131..295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12001.1706.1

>prot_L-elsbetiae_contig12001.1706.1 ID=prot_L-elsbetiae_contig12001.1706.1|Name=mRNA_L-elsbetiae_contig12001.1706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
VVTNDLYRDHVKGVDGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSFL
PSQDQ
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mRNA from alignment at L-elsbetiae_contig12001:131..295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12001.1706.1 ID=mRNA_L-elsbetiae_contig12001.1706.1|Name=mRNA_L-elsbetiae_contig12001.1706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig12001:131..295+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGTGACGAACGACCTCTACCGCGACCACGTCAAGGGCGTCGACGGCCG
CAAGAAGGCGGACGCCGCCCGCCGCTGGATCAAGACCCACTCCATATCCT
ACACCTTTGTGGTGGACGAGTTTTTCCCCAACCCGGACTTCTCCTTCCTC
CCTTCTCAGGACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12001:131..295+

>mRNA_L-elsbetiae_contig12001.1706.1 ID=mRNA_L-elsbetiae_contig12001.1706.1|Name=mRNA_L-elsbetiae_contig12001.1706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig12001:131..295+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGTGACGAACGACCTCTACCGCGACCACGTCAAGGGCGTCGACGGCCG
CAAGAAGGCGGACGCCGCCCGCCGCTGGATCAAGACCCACTCCATATCCT
ACACCTTTGTGGTGGACGAGTTTTTCCCCAACCCGGACTTCTCCTTCCTC
CCTTCTCAGGACCAGGTCGTGACGAACGACCTCTACCGCGACCACGTCAA
GGGCGTCGACGGCCGCAAGAAGGCGGACGCCGCCCGCCGCTGGATCAAGA
CCCACTCCATATCCTACACCTTTGTGGTGGACGAGTTTTTCCCCAACCCG
GACTTCTCCTTCCTCCCTTCTCAGGACCAG
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