mRNA_L-elsbetiae_contig1200.1705.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1200.1705.1
Unique NamemRNA_L-elsbetiae_contig1200.1705.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: D7G6J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.490e-46
Identity = 85/138 (61.59%), Postives = 103/138 (74.64%), Query Frame = 3
Query:  327 VCDFEGRAALDP-EQLAASPLAACFSSGSLDQHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEVRLQRQAIRYPGTEFKVTYRRPRLPDD 737
            VCDF GRA   P E +  S LAACF SGSL+QHLV+TGL  GAGPHL +L   V+FS+  G  + RAAGPM+VGED RVY AV+YP+M+ELWP++Y+  AV VV+VDVF+ VR   + IRYPGTE KVTYRR R+  D
Sbjct:    5 VCDFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLV-GAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRRTRMSPD 141          
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: A0A6H5L3B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 4.970e-31
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 3
Query:  327 VCDFEGRAALDP-EQLAASPLAACFSSGSLDQHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEV 659
            VCDF GRA   P E + +S LAACF SGSL+QHLV+TGL  GAGP L +L   V+FS+  G  + RAAGPM+VGED RVY AV++P+M+ELWP++Y+  AV VV+V +F  +
Sbjct:   14 VCDFHGRAVAHPQESVDSSALAACFMSGSLEQHLVFTGLV-GAGPDLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKFPTMNELWPEIYQNVAVEVVQVRLFPSI 124          
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: A0A6H5L4C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C2_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.240e-30
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 3
Query:  342 GRAALDP-EQLAASPLAACFSSGSLDQHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEV 659
            GRA   P E +  SPLA    SGS +QHLV+T L+ GAGPHLA L   VHFS+T GH +ERA GPM+V +DGRVY AV+ PS+SELWP++Y  +++RVV+VDV+V V
Sbjct:    6 GRAVAQPQESVDRSPLATFLLSGSREQHLVFTELD-GAGPHLAHLTPTVHFSITAGHSLERAGGPMQVRKDGRVYVAVKCPSISELWPEIYNNRSIRVVQVDVYVTV 111          
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: D8LCL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 7.850e-26
Identity = 71/146 (48.63%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  333 DFEGRAALDPEQLAASPLAACFSSGSLD--QHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEVRLQRQAIRYPGTEFKVTYRRPR--LPDDGFVPWRP 758
            DFEGR  ++P + + SP AA FS    D  QHLV+ GL     P L  LAA   FS   G + ER  GP++ G +GRVY AVQYPSM+ELWP+VY + A+RVV+VD+ VEVR +     Y  TE K  YRRP     + G + WRP
Sbjct:  210 DFEGRT-IEPNKPSDSPFAAAFSVPRSDDEQHLVFIGLGETGRP-LPTLAARAQFSANPGRKAERMVGPLQAGSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKVDMLVEVRSRYGDSLYLATELKAMYRRPPGGSRNQGAL-WRP 352          
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: A0A6H5JZ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.590e-23
Identity = 70/148 (47.30%), Postives = 88/148 (59.46%), Query Frame = 3
Query:  333 DFEGRAALDPEQLAASPLAACFSSGSLD--QHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEV--GEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEVRLQRQAIRYPGTEFKVTYRRPR--LPDDGFVPWRP 758
            DFEGR  ++P + + SP AA  S    D  Q+LV+ GL     P L  LAA   FS   G Q ER  GP++   G +GRVY AVQYPSM+ELWP+VY +KA+RVV+VD+ VEVR +     Y  TE    YRRP     + G + WRP
Sbjct:  292 DFEGRT-IEPNKPSGSPFAAALSVPRSDDEQYLVFIGLGETGRP-LPALAARAQFSANPGRQAERMVGPLQARAGSNGRVYGAVQYPSMAELWPEVYNSKAIRVVKVDMLVEVRSRSGDSLYLATELMAMYRRPSGGSRNQGAL-WRP 436          
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.600e-21
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  330 CDFEGRAALDPEQLAASPLAACFSSGSLDQHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEVRLQRQAIRYPGTEFKVTYRRPRLPDDG 740
            CDFEGR     +  +  P     SS     HLV+TGLNN  G  L  L    HF V   H+V +   P+++G +GR YA V YPSM E+WP++Y T  +RVVEVD+ VE+R      +Y G + KVTY R   P D 
Sbjct:  384 CDFEGRPTPPTDPKSGEPPIP--SSTDRQCHLVFTGLNN-TGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLRAAPPADA 517          
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: D8LCJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ7_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.050e-18
Identity = 57/134 (42.54%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  333 DFEGRAALDPEQLAASPLAACFSSGSLD--QHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEVRLQRQAIRYPGTEFKVTYRRPRL 728
            DF+GR+         SP A+ FS    D  Q+L +TGL +  G  L  L A V FSV      E   GP++ G +GRVY A++YPSMSELWP++  T AVRVV+VD  V++R ++    + G   KVTYR+ ++
Sbjct:  476 DFDGRSYQPDNPPKDSPFASVFSVPCSDEAQYLAFTGLGH-TGQPLRMLTARVQFSVNSERTAESVVGPLQAGGNGRVYGALRYPSMSELWPEICSTSAVRVVQVDTLVDIRSRQGDFLFLGNGPKVTYRQAQV 608          
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: D7G7N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.740e-15
Identity = 56/146 (38.36%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  330 CDFEGRAALDPEQLAASPLAACFSSGSLDQHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEVRLQRQA-IRYPGTEFKVTYRR--PRLPDDGFVPWRP 758
            CD EGR  +     + +P+ A  S    + H+ +TGL    G  L  L     F V   HQ+     P+EVG DGR Y+ V YP M E+WP++Y T  +R+VEVDV +E+        R+ G   KV YRR  P + D G V  RP
Sbjct:  116 CDLEGRP-ITRIGNSLTPITAS-SPDVRESHIEFTGLEK-TGHDLRGLRVTAIFGVDAVHQIACVTSPIEVGPDGRAYSRVFYPGMQEIWPELYNTSNIRLVEVDVAIEILSDTCGEFRFVGPHLKVAYRRAIPPVDDGGDVSPRP 258          
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: D7G7N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 5.980e-15
Identity = 53/127 (41.73%), Postives = 68/127 (53.54%), Query Frame = 3
Query:  330 CDFEGRAALDPEQLAASPLAACFSSGSLDQHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEVRLQR-QAIRYPGTEFKV 707
            CDFEGR    P   +    ++  SS   D H+V+TGLN+  G     L   V F V   HQ+     P++V  DGR Y+ V YPS+ E+WP++Y T  VR VEVDV VEV     +  RY G   KV
Sbjct:   56 CDFEGRPL--PGGGSGMTPSSTVSSNGRDTHVVFTGLND-TGHDPRGLRVTVIFGVDAVHQIACVTSPIQVAADGRAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGPHLKV 179          
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.070e-14
Identity = 61/158 (38.61%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  270 YGAGSPGRAGETRT---GAI*AV----CDFEGRAALDPEQLAASPLAACFSSGSLDQHLVYTGLNNGAGPHLAFLAAAVHFSVTIGHQVERAAGPMEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEVRLQR-QAIRYPGTEFKVTYRR 719
            +G G  G A E R    G + A+    CDFEGR    P   +    ++  SS   D H+V+TGL+N  G     L   V F V   HQ+     P++V  DGR Y+ V YPS+ ++WP++Y T  VR VEVDV VE+     +  RY G   KV Y R
Sbjct:  207 HGFGGAGMAEERRLPIEGVVVALARKECDFEGRPL--PGGGSGMTPSSTVSSNGRDTHVVFTGLHN-TGHDPRGLRVTVIFGVDAVHQIACVTSPVQVAADGRAYSRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGPHLKVGYTR 361          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1200.1705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G6J1_ECTSI1.490e-4661.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3B8_9PHAE4.970e-3157.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4C2_9PHAE3.240e-3058.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCL1_ECTSI7.850e-2648.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ42_9PHAE4.590e-2347.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ48_ECTSI4.600e-2143.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LCJ7_ECTSI2.050e-1842.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7N5_ECTSI4.740e-1538.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7N4_ECTSI5.980e-1541.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDQ6_9PHAE1.070e-1438.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1200contigL-elsbetiae_contig1200:13812..18491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1763
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1200.1705.1prot_L-elsbetiae_contig1200.1705.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1200 15508..17489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815402.3702748-UTR-L-elsbetiae_contig1200:13811..141371622815402.3702748-UTR-L-elsbetiae_contig1200:13811..14137Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1200 13812..14137 +
1691682881.8568263-UTR-L-elsbetiae_contig1200:13811..141371691682881.8568263-UTR-L-elsbetiae_contig1200:13811..14137Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1200 13812..14137 +
1622815402.3829982-UTR-L-elsbetiae_contig1200:15157..152661622815402.3829982-UTR-L-elsbetiae_contig1200:15157..15266Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1200 15158..15266 +
1691682881.8673863-UTR-L-elsbetiae_contig1200:15157..152661691682881.8673863-UTR-L-elsbetiae_contig1200:15157..15266Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1200 15158..15266 +
1622815402.3932052-UTR-L-elsbetiae_contig1200:15409..155071622815402.3932052-UTR-L-elsbetiae_contig1200:15409..15507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1200 15410..15507 +
1691682881.8780415-UTR-L-elsbetiae_contig1200:15409..155071691682881.8780415-UTR-L-elsbetiae_contig1200:15409..15507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1200 15410..15507 +
1622815402.4549916-UTR-L-elsbetiae_contig1200:17489..184911622815402.4549916-UTR-L-elsbetiae_contig1200:17489..18491Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1200 17490..18491 +
1691682881.9207363-UTR-L-elsbetiae_contig1200:17489..184911691682881.9207363-UTR-L-elsbetiae_contig1200:17489..18491Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1200 17490..18491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815402.4064338-CDS-L-elsbetiae_contig1200:15507..155131622815402.4064338-CDS-L-elsbetiae_contig1200:15507..15513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1200 15508..15513 +
1691682881.8861089-CDS-L-elsbetiae_contig1200:15507..155131691682881.8861089-CDS-L-elsbetiae_contig1200:15507..15513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1200 15508..15513 +
1622815402.4215522-CDS-L-elsbetiae_contig1200:16299..163981622815402.4215522-CDS-L-elsbetiae_contig1200:16299..16398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1200 16300..16398 +
1691682881.8941312-CDS-L-elsbetiae_contig1200:16299..163981691682881.8941312-CDS-L-elsbetiae_contig1200:16299..16398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1200 16300..16398 +
1622815402.433382-CDS-L-elsbetiae_contig1200:16859..169251622815402.433382-CDS-L-elsbetiae_contig1200:16859..16925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1200 16860..16925 +
1691682881.9022741-CDS-L-elsbetiae_contig1200:16859..169251691682881.9022741-CDS-L-elsbetiae_contig1200:16859..16925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1200 16860..16925 +
1622815402.4442844-CDS-L-elsbetiae_contig1200:17432..174891622815402.4442844-CDS-L-elsbetiae_contig1200:17432..17489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1200 17433..17489 +
1691682881.9102762-CDS-L-elsbetiae_contig1200:17432..174891691682881.9102762-CDS-L-elsbetiae_contig1200:17432..17489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1200 17433..17489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1200.1705.1

>prot_L-elsbetiae_contig1200.1705.1 ID=prot_L-elsbetiae_contig1200.1705.1|Name=mRNA_L-elsbetiae_contig1200.1705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
MEVGEDGRVYAAVQYPSMSELWPDVYRTKAVRVVEVDVFVEVRLQRQAIR
YPGTEFKVTYRRPRLPDDGFVPWRP*
back to top

mRNA from alignment at L-elsbetiae_contig1200:13812..18491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1200.1705.1 ID=mRNA_L-elsbetiae_contig1200.1705.1|Name=mRNA_L-elsbetiae_contig1200.1705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4680bp|location=Sequence derived from alignment at L-elsbetiae_contig1200:13812..18491+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGGACGATACTTAGCCGTCGGTAGATAGGCACACCGGCTCTTCTTGCG GTTCTGTTCCGAATGTTCATGTCACGGTTGACTGAGCACCACGACCCGGG TCAACCGGGGTGCTATGCTCACCTCTCCCTGCCATATTGCAAAGCGACAC AACAAAACACCCCAGACTTCCAGCAGAGCAGAGCGCAAGGCCTGCAAGCA TTCCAGCTACGGGACACACAACACACGCTGTCGCCATAGATAGACATACG CTCAGCTCGCAGGAAACCATATGGAGCTGGGAGTCCGGGAAGAGCAGGTG AGACGCGTACAGGAGCTATCTAGGCTGCGTGATTATATCCATGTTTTCTC GGTGCTTGTTGCGTGATGGTGAGGCGACCCTATTCATCTGTCTTCACACA AACACAGCGAAGAATTTGTACATACATGGCAGTTACAACTCTCCCGCATC TCCGCATTGTAACAGATAAATGGCGATCGAGGTGTAGTGAGCGAGCGCTC GCTGGCTAGACCTGTCTCGTGTATCGAACATTATACTATTTTCATTTTGC TCGGCGAGGAACGTCCAGTAGAAACACAAACGGGAGTATTTATATCGGGT CCTAAACCTAGCATATAAAGATCCGGGGATCAACAGATCTCCATGCCTAC TGCATAGACTACACTATCACCTCTCCGTTCCTCTAACCCCAAGGTCCGAT TGACGGCCAAAATTGGTTAATTACAGACTTTTTGTTGTCTACAACTCAGC AACTATCTATACGGCATACGCTGATGCAACCAGTATGAATGGTATGTGCT TGCGAGACTCTTGACGTGGCAGGAATTACATCAGTAGGATATTTAGACTA AAGCTATCCCCCAAGTTAACACGCTGACTCTGCTTTATGCGTAGGAGAAG AGCGTGAAAAAAGCGTGCGCGAGACCCGAGCCATTTATCTAGCGCAACTT GTCTCAACAAAGCTAAATTTCAGCTGGTAACGACCCGCTCTTGGTACCTT TTTCGCCTCTGAAAAGAAAACCGATGAAATCTAGATACTCCGAGCAGTCA CTTGTATCTAGAGTTTTAAAACGCACCCCCAGAGAAAGCCTGAAACACAA AGATATACGAGTGATACGAAGCCCAACGTGTTACGACAAGCAAGGAAAAC TGTAAGCTGCGGTCCCAATACGATCGGAGAGCGTGAGCGTTATTCGATGA GCCAGTGCCAGCACACGAAGGGCTCCACAAATGAGACTTTTCCACCTCCA AATGCGGCTATCGTGCTCTACCTACTGTTCTTTGTCGCTTGGAAACCAAC CGGCCAAATCTCACGCACCACATAACAATACGCACGTAATGCTCAGGTGT GCGACTTTGAGGGCCGAGCTGCACTGGACCCGGAACAGCTGGCTGCCTCG CCTCTGGCGGCTTGTTTCAGCTCCGGTAGCCTCGATCAGCATCTCGTGTA CACAGGTAAGGGAAGCGACAGGTTTGCTAGCAATCGGCGGTTTATGGAGC CCTTTCAAGCTCGGTACAAGACGAACTACATATTCGCCAGATCATGTTGG TCATAACTATTGGGGCTAAATCTCTCGTTTTTCTTTTTTTTTTGCCAGGC CTTAACAACGGAGCGGGTCCGCACTTAGCTTTTCTAGCCGCCGCGGTGCA CTTCTCCGTTACAATCGGGCACCAAGTGGAGAGAGCGGCGGGTCCCATGG AGGTGCGGCGCGATTTCGCATGCACAAGACTCGTATATTTTTGCTTTTTA AAAGAGAGTCTGAGGTAAACGTGAAGTTGGGCTGTGTATCTATCTAGATA TCGTAGTCGGTCTATGTACATAGTTTTGTACTGTGTACATAATCCTCGTA AACCTTGTAGCCCCAAAATCGCAAGTTTGCAACTTATCGTGAGAGGGAAA AAAACACGGTTTGGCACTGGGAAACGATAGTCTCGATATCGTGCGTCCAG CATTGTAGAGCCGAGGGAAATGCTAAACCGTTGCCGCTTTCAAAAGTGAG GGCAAACACCCGGGAAGGTGGGCAACACAAAACAAGCCTGATACTTCCCC TCTTTTTTTTATGATCCCGTTGGATTCGCCGAACACCTCAGATAGGTCTA GATAGACTGGCGCCAGAGTTGACGTGGAGCAAGTACATCACACGACCGTA GCCGTTAGCGCAAGTATGAAATTGCGAATACATTTGATGCTTGTTGGAGT GAAAAGGGAGCAAAGCAGATGTATGTGTCAAGCGTCGGCCACGCTGACCT CAGAGACCAAATGCTGTGCATAAAAATGAGCCAAATATTACCGATCGTCG CCAGGCTTTCGTGATAAAAAAAAGCAACGAACCCTCCTCCTCCGAGAGAA CAAGCACGCATGCGCCCCATGAAGCGAGCGTTTGCGTATGATCAAACCTT CTGGCTCAACGAAATGAAATACATCTGCAGCCCGTTGTTAAGGTGTTCTT GGGCGGTATCCGATGTTTTATGTACCGTTCTTGTTCAGGTGGGAGAAGAC GGACGCGTGTACGCCGCAGTGCAATATCCAAGTATGAGCGAGCTCTGGCC AGACGTATACCGCACCAAAGCAGTTCGGGTCGTTGAGGTGAGCTCAACAA GTTGTGCGTGCCACCGATTTCGAAGACTTTCGTGCGTGAGTGCGGAAGAT ACACAGGTAGAATGAGTATATAGCTCAGAGGGTTTTCGGTCAGGTTTCAT CGCGAGTTCTGCGGCTGAGTTTCATCGCGAGTTCTGCGGCTAATGTTTGC GTGTGAATCTATGTATGTACTCCGAGTATGTATCTGCAATTGCTGGATGG CAAGTGCAATTATCATACATAATGGTCAGTCTCTATGCATCGCAGTTCAC CGTTTGCCTTCACGAGGGAGTCACCTTACTCGAGCCGTCATGCCAAAAAT ACAACGACCCGCCATTTGCATGTGTGTGTCGCAGAAACGGCTGAGAGATG TTGTACGCCCTCCTCCTCTGCTCACCTGTTACTACTGCTTGTACGTCTAC ATACTCCGCTTCTCGCGCCCTCCGATTGCACCTGGCCACGCTGCGAAGGT GGATGTTTTTGTTGAGGTTCGATTACAGCGTCAGGCGATTCGGTACCCGG GCACCGAGTTCAAGGTGGGTGCTGCATCGTGTTAACATGGATCCGCAGAT CCACGTAATAAGCCACTGGCGCGGGTACATACATACGTGGTGCACTAGAT GTGTATAGCAGTGCCCGAGAATACCGTGCACTAGCTTTGATTGAAAAGCA CGATGACCATAGACTACCAGTCAGATACTATGTAGTCTTGTCTACATAGG ATGTACCCCCCAACCCACCCCCCCAAAAGTCAACTTCCTTGTGTGATCGT GACAAATCAGTGTACCGGAAAGTCATCCAACAAATCCAAGTCAATAAGCA TTTCCCCGAGTTTTAGGCGACGATATGCCACCCTTTGCGAGAACACCCGT CACTCTTGTCCTCCAATGTACGAAATATCCCTAGATAGACTAGACTACAT AGACACGCAATCTAGTCCATACATGTGTACGTCAGAGAAGGCGTTTTTTT TCCATGGCAAGCAAGCACCCAACTTTGTGACGGCTGTGCCTGAGACCAGT TTGTTTGTTGCTCCCGACCAGGTGACGTATCGACGACCACGGCTCCCGGA CGATGGCTTTGTGCCATGGAGACCATGAAACGTCCTGGAGAAAATTCGAC CCGGTGTGTGCGTGTGAAGATGTCTTCATTCAGCAAATGTTTAGCGGTCA TGCCTCGCTGCACGGTTGATTCGGCTCCGTCCCAGACGGCACACTACTGT GATACATATTTCTACAGTAGTATCTAGTACTTACGCAAACATTTTTACAG TAGTCAGTACGCGTTTTTACGTCGGCCTGTTTCGAGCGGCGGGCTGTTTC GCGGATGTGGGGGTTTCACTGCAGCTGTGTTTGAGTTCGGATCAACGGCG GCATGTGACATTTTGTTGTTTATGTTGTTGTTGTTGTTCCCTTGTTGTTG TTGTTGTTGTCGTCGTCGTATCATCGTGTGGTGAGTAGGTGTGTGTGTCT CAGTATCGGGCGGCAGAGACTGGTGGTTATCTACATACATACATACCTAG ATATACCCGCGCGAATGTCGATGACAGAAGATACCACACCCCGTGGTGTG ATGTACGTAGTGTGTGGTAACACTAACACTTGTAGTCACACTGTGATACA ATATTCTGGTAGATAGAGTATCTAGTCTATGCAGTTTTTTTTTACTTGAT AAATTGTGGCGTACTTGTCGCGGTCACGTGTACGTAGTATCTAGATACAT ATATATGTAGTTCGAGCCTCACAGCACGGACGGTGCGCTATTTTGGAGAA TTTGTTTCGGGTGTGGTATCTCCTGTCGACCTCGCGTCATCGGCCTACTT ATTATGCAGGTACGGCAACAAAACGTTTTTGGCGTCTATCTGGCTTTAAA AAACAAAAAGTCGCTGCGTCGCGTGTGTGTCGAAATTTTGGCGAGTGTTT TGTCTGGAGCAGTGGGAAGCGCAACAACCAATTAGTTTGTTTTTACTCAG CAGGCGTCGTCCTCGCCGGGAGTTTCATCGAACCGCCAACCAATTGACAC GTTTGACGCAATAAATATGTAAAAGAGTATGATGCTTGTGTTGTGCGCGA ATGGTGAACGTGCGACGCGCTGCATGTCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1200:13812..18491+

>mRNA_L-elsbetiae_contig1200.1705.1 ID=mRNA_L-elsbetiae_contig1200.1705.1|Name=mRNA_L-elsbetiae_contig1200.1705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig1200:13812..18491+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATGGAGGTGGGAGAAGACGGACGCGTGTACGCCGCAGTGCAATA
TCCAAGTATGAGCGAGCTCTGGCCAGACGTATACCGCACCAAAGCAGTTC
GGGTCGTTGAGGTGGGAGAAGACGGACGCGTGTACGCCGCAGTGCAATAT
CCAAGTATGAGCGAGCTCTGGCCAGACGTATACCGCACCAAAGCAGTTCG
GGTCGTTGAGGTGGATGTTTTTGTTGAGGTTCGATTACAGCGTCAGGCGA
TTCGGTACCCGGGCACCGAGTTCAAGGTGGATGTTTTTGTTGAGGTTCGA
TTACAGCGTCAGGCGATTCGGTACCCGGGCACCGAGTTCAAGGTGACGTA
TCGACGACCACGGCTCCCGGACGATGGCTTTGTGCCATGGAGACCATGAG
TGACGTATCGACGACCACGGCTCCCGGACGATGGCTTTGTGCCATGGAGA
CCATGA
back to top