mRNA_L-elsbetiae_contig12.1699.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12.1699.1
Unique NamemRNA_L-elsbetiae_contig12.1699.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12.1699.1 vs. uniprot
Match: A0A6H5JBB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB5_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.820e-68
Identity = 131/206 (63.59%), Postives = 158/206 (76.70%), Query Frame = 1 
Query:   10 VTVAHNATDIEVADAISSFSTSGGNVSVSSEDIVEVDVGFQAESVITGKRWEVTFSALAAAGDVPDIEVDGSSGLLTGAGVGVSVNEVSKGVTADVQKITIDGYGGTFAFSFAD------DGSTSPPVPWDATSSDLAAALLEATGKRVYVERSPI-TPLANSNIGGYVWLVLFAEALDGAWDNVDLDATNLVPDDDLLAGSSRQA 606
            V+++HNA+D +VA AISSFS SGGNV+VSS++ ++ + G      +TGKRW VTFSALAAAGDVP I V+ SS  L GAGVGV VNE SKGVTADVQ +TIDGY GTFAF FAD        STS PV W+A+SSDLA ALLEATGKRVYVER+P+ +P +++  GG+ WLVLFAEAL    D + L+ TNLVPDD +LAG+SRQA
Sbjct: 10129 VSLSHNASDDDVAAAISSFSVSGGNVTVSSDNNIQGNSGIDGSVTVTGKRWIVTFSALAAAGDVPAIGVNWSSSSLAGAGVGVYVNETSKGVTADVQGVTIDGYSGTFAFVFADATNASSSNSTSSPVRWNASSSDLAEALLEATGKRVYVERTPVASPTSSATSGGFTWLVLFAEALSETRDKISLNTTNLVPDDAVLAGASRQA 10334
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BLAST of mRNA_L-elsbetiae_contig12.1699.1 vs. uniprot
Match: D7FLK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK0_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 4.850e-57
Identity = 110/169 (65.09%), Postives = 127/169 (75.15%), Query Frame = 1 
Query:  124 GFQAESVITGKRWEVTFSALAAAGDVPDIEVDGSSGLLTGAGVGVSVNEVSKGVTADVQKITIDGYGGTFAFSFAD-------DGSTSPPVPWDATSSDLAAALLEATGKRVYVERSPIT-PLANSNIGGYVWLVLFAEALDGAWDNVDLDATNLVPDDDLLAGSSRQA 606
            G     ++TGKRW VTFSALAAAGDVP I V+ SS  LTGAGVGV VNE SKGVTADVQ +TIDGY GTFAF FAD         STS PV W+A+SSDLA ALLEATGKRVYVER+ +T P +++  GG+ WLVLFAEAL   W  + L+ TNL+PDD +LAG+SRQA
Sbjct: 10490 GNDGSVIVTGKRWSVTFSALAAAGDVPAIGVNWSSSSLTGAGVGVYVNETSKGVTADVQGVTIDGYSGTFAFVFADATNNASTSNSTSSPVRWNASSSDLAEALLEATGKRVYVERTTVTSPTSSATSGGFTWLVLFAEALSETWHKISLNTTNLLPDDAVLAGASRQA 10658
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12.1699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBB5_9PHAE1.820e-6863.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLK0_ECTSI4.850e-5765.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12contigL-elsbetiae_contig12:52964..53569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue3.2e-51
Seed eggNOG ortholog2880.D7FLK0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.semaphorin-plexin signaling pathway
EggNOG OGsKOG3610@1,KOG3610@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size607
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815401.0956526-CDS-L-elsbetiae_contig12:52963..535691622815401.0956526-CDS-L-elsbetiae_contig12:52963..53569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12 52964..53569 +
1691682880.8470893-CDS-L-elsbetiae_contig12:52963..535691691682880.8470893-CDS-L-elsbetiae_contig12:52963..53569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12 52964..53569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12.1699.1prot_L-elsbetiae_contig12.1699.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12 52964..53569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12.1699.1

>prot_L-elsbetiae_contig12.1699.1 ID=prot_L-elsbetiae_contig12.1699.1|Name=mRNA_L-elsbetiae_contig12.1699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
EEGVTVAHNATDIEVADAISSFSTSGGNVSVSSEDIVEVDVGFQAESVIT
GKRWEVTFSALAAAGDVPDIEVDGSSGLLTGAGVGVSVNEVSKGVTADVQ
KITIDGYGGTFAFSFADDGSTSPPVPWDATSSDLAAALLEATGKRVYVER
SPITPLANSNIGGYVWLVLFAEALDGAWDNVDLDATNLVPDDDLLAGSSR
QA
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mRNA from alignment at L-elsbetiae_contig12:52964..53569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12.1699.1 ID=mRNA_L-elsbetiae_contig12.1699.1|Name=mRNA_L-elsbetiae_contig12.1699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig12:52964..53569+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGAGGGGGTGACCGTAGCTCACAACGCCACCGATATTGAGGTTGCCGA
CGCGATTTCATCGTTTTCAACCTCCGGCGGAAACGTGAGCGTCTCGTCTG
AGGATATCGTCGAGGTGGATGTAGGTTTCCAGGCCGAGAGTGTAATCACC
GGAAAGCGGTGGGAGGTGACGTTTTCGGCCTTGGCTGCCGCGGGAGACGT
TCCCGATATAGAAGTAGACGGGTCCTCGGGCTTGTTGACCGGTGCGGGAG
TGGGCGTTTCCGTCAACGAGGTGTCGAAGGGGGTAACCGCCGACGTCCAG
AAAATCACCATCGACGGCTACGGTGGAACGTTCGCCTTCTCCTTCGCGGA
TGATGGTTCTACATCTCCACCCGTGCCTTGGGACGCCACCTCGTCAGATC
TCGCGGCAGCTCTACTCGAAGCAACCGGAAAGCGCGTTTATGTGGAGCGC
TCACCCATCACACCTTTGGCGAATTCCAATATCGGGGGGTACGTCTGGCT
GGTACTCTTTGCTGAGGCACTCGACGGGGCCTGGGACAATGTCGACCTCG
ACGCAACGAACCTTGTGCCTGACGATGATCTCTTGGCTGGGTCCTCCCGG
CAGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12:52964..53569+

>mRNA_L-elsbetiae_contig12.1699.1 ID=mRNA_L-elsbetiae_contig12.1699.1|Name=mRNA_L-elsbetiae_contig12.1699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig12:52964..53569+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGAGGGGGTGACCGTAGCTCACAACGCCACCGATATTGAGGTTGCCGA
CGCGATTTCATCGTTTTCAACCTCCGGCGGAAACGTGAGCGTCTCGTCTG
AGGATATCGTCGAGGTGGATGTAGGTTTCCAGGCCGAGAGTGTAATCACC
GGAAAGCGGTGGGAGGTGACGTTTTCGGCCTTGGCTGCCGCGGGAGACGT
TCCCGATATAGAAGTAGACGGGTCCTCGGGCTTGTTGACCGGTGCGGGAG
TGGGCGTTTCCGTCAACGAGGTGTCGAAGGGGGTAACCGCCGACGTCCAG
AAAATCACCATCGACGGCTACGGTGGAACGTTCGCCTTCTCCTTCGCGGA
TGATGGTTCTACATCTCCACCCGTGCCTTGGGACGCCACCTCGTCAGATC
TCGCGGCAGCTCTACTCGAAGCAACCGGAAAGCGCGTTTATGTGGAGCGC
TCACCCATCACACCTTTGGCGAATTCCAATATCGGGGGGTACGTCTGGCT
GGTACTCTTTGCTGAGGCACTCGACGGGGCCTGGGACAATGTCGACCTCG
ACGCAACGAACCTTGTGCCTGACGATGATCTCTTGGCTGGGTCCTCCCGG
CAGGCCGAAGAGGGGGTGACCGTAGCTCACAACGCCACCGATATTGAGGT
TGCCGACGCGATTTCATCGTTTTCAACCTCCGGCGGAAACGTGAGCGTCT
CGTCTGAGGATATCGTCGAGGTGGATGTAGGTTTCCAGGCCGAGAGTGTA
ATCACCGGAAAGCGGTGGGAGGTGACGTTTTCGGCCTTGGCTGCCGCGGG
AGACGTTCCCGATATAGAAGTAGACGGGTCCTCGGGCTTGTTGACCGGTG
CGGGAGTGGGCGTTTCCGTCAACGAGGTGTCGAAGGGGGTAACCGCCGAC
GTCCAGAAAATCACCATCGACGGCTACGGTGGAACGTTCGCCTTCTCCTT
CGCGGATGATGGTTCTACATCTCCACCCGTGCCTTGGGACGCCACCTCGT
CAGATCTCGCGGCAGCTCTACTCGAAGCAACCGGAAAGCGCGTTTATGTG
GAGCGCTCACCCATCACACCTTTGGCGAATTCCAATATCGGGGGGTACGT
CTGGCTGGTACTCTTTGCTGAGGCACTCGACGGGGCCTGGGACAATGTCG
ACCTCGACGCAACGAACCTTGTGCCTGACGATGATCTCTTGGCTGGGTCC
TCCCGGCAGGCC
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